Metamenu

Effective results for Lactobacillus oris F0423 (eggnog40)

Summary

Number of putative secreted proteins: 109
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 109 proteins (23 high, 86 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
944562.HMPREF9102_1465(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_0705(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_2104(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_1446(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_2165(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_0219(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_2147(PF13276) (PF00665) PF13518(mitochondrial)
944562.HMPREF9102_1775(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_1179(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_1547(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_1764(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_0481(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_2089(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_0914(PF13276) (PF00665)(mitochondrial)
944562.HMPREF9102_1266(PF00344)mitochondrial
944562.HMPREF9102_0883(PF00665)(mitochondrial)
944562.HMPREF9102_1917(PF02371)ER
944562.HMPREF9102_2115(PF03083)ER
944562.HMPREF9102_1033(PF00413)ER
944562.HMPREF9102_2140(PF00665)(mitochondrial)
944562.HMPREF9102_0789(PF00344)mitochondrial
944562.HMPREF9102_1302(PF00413)ER
944562.HMPREF9102_1361(PF02866) (PF00056)(mitochondrial)
944562.HMPREF9102_1860(PF00413)ER
944562.HMPREF9102_1288(PF13936) (PF00665)
944562.HMPREF9102_1851(PF02866) (PF00056)
944562.HMPREF9102_1100(PF00121)(mitochondrial)
944562.HMPREF9102_2100(PF00665)(mitochondrial)
944562.HMPREF9102_2111(PF13936) (PF00665)
944562.HMPREF9102_1908(PF13936) (PF00665)
944562.HMPREF9102_1026(PF13936) (PF00665)
944562.HMPREF9102_0159(PF06414)(plastid)
944562.HMPREF9102_0946(PF16193) (PF12002)
944562.HMPREF9102_1548PF13518(mitochondrial)
944562.HMPREF9102_1013(PF13936) (PF00665)
944562.HMPREF9102_0169(PF02866) (PF00056)
944562.HMPREF9102_0491(PF02866) (PF00056)
944562.HMPREF9102_0485PF03577(plastid)
944562.HMPREF9102_2088(PF13276) (PF00665)not used
944562.HMPREF9102_1969(PF02866) (PF00056)
944562.HMPREF9102_0581(PF00121)(mitochondrial)
944562.HMPREF9102_1513(PF16193) (PF12002)
944562.HMPREF9102_2045(PF02866) (PF00056)
944562.HMPREF9102_0689(PF13936) (PF00665)
944562.HMPREF9102_0123(PF00665)(plastid)
944562.HMPREF9102_1343(PF16193) (PF12002)
944562.HMPREF9102_1432(PF02866) (PF00056)
944562.HMPREF9102_1657(PF01610)(mitochondrial)
944562.HMPREF9102_1466PF13518
944562.HMPREF9102_0704PF13518
944562.HMPREF9102_1618(PF02371)
944562.HMPREF9102_2103PF13518
944562.HMPREF9102_1827(PF02371)
944562.HMPREF9102_0713(PF00665)
944562.HMPREF9102_1591(PF02275)
944562.HMPREF9102_1445PF13518
944562.HMPREF9102_0699(PF02371)
944562.HMPREF9102_1325(PF01610)not used
944562.HMPREF9102_1326(PF01610)
944562.HMPREF9102_2166PF13518
944562.HMPREF9102_2164(PF00665)
944562.HMPREF9102_1937(PF01610)
944562.HMPREF9102_0463(PF01610)
944562.HMPREF9102_0511(PF02275)
944562.HMPREF9102_1817(PF03083)
944562.HMPREF9102_0217(PF01610)
944562.HMPREF9102_0036(PF02371)
944562.HMPREF9102_1323PF03577
944562.HMPREF9102_1774PF13518
944562.HMPREF9102_2157(PF06414)
944562.HMPREF9102_0780(PF01610)
944562.HMPREF9102_1017(PF06026)
944562.HMPREF9102_1016(PF06026)
944562.HMPREF9102_1786(PF01610)
944562.HMPREF9102_0499(PF02371)
944562.HMPREF9102_1763PF13518
944562.HMPREF9102_1762PF03577
944562.HMPREF9102_2090PF13518
944562.HMPREF9102_2099PF13518
944562.HMPREF9102_0222(PF00665)
944562.HMPREF9102_0220PF13518
944562.HMPREF9102_0793(PF01501)
944562.HMPREF9102_0798(PF01501)
944562.HMPREF9102_1574(PF01610)
944562.HMPREF9102_0175(PF02371)
944562.HMPREF9102_1370(PF02371)
944562.HMPREF9102_1376(PF02371)
944562.HMPREF9102_0489PF03577
944562.HMPREF9102_0482PF13518
944562.HMPREF9102_1193(PF06026)
944562.HMPREF9102_1188(PF01610)
944562.HMPREF9102_1180PF13518
944562.HMPREF9102_2054(PF01610)
944562.HMPREF9102_0293PF03577
944562.HMPREF9102_0744(PF01610)
944562.HMPREF9102_0512(PF02371)
944562.HMPREF9102_0344(PF02371)
944562.HMPREF9102_0125PF13518
944562.HMPREF9102_1340(PF02275)
944562.HMPREF9102_1727PF03577
944562.HMPREF9102_1726PF03577
944562.HMPREF9102_1659(PF00121)
944562.HMPREF9102_0913PF13518
944562.HMPREF9102_1883(PF02371)
944562.HMPREF9102_0245(PF02275)
944562.HMPREF9102_1245(PF02371)
944562.HMPREF9102_1890(PF01610)
944562.HMPREF9102_0724(PF01501)
944562.HMPREF9102_2019(PF01610)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================