Metamenu

Effective results for Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1 (eggnog40)

Summary

Number of putative secreted proteins: 85
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 85 proteins (30 high, 55 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
754252.PFREUD_24250(PF13683) (PF13276)mitochondrial
754252.PFREUD_25040(PF13683) (PF13276)mitochondrial
754252.PFREUD_25100(PF13683) (PF13276)mitochondrial
754252.PFREUD_24520(PF13683) (PF13276)mitochondrial
754252.PFREUD_24610(PF13683) (PF13276)mitochondrial
754252.PFREUD_25160(PF13683) (PF13276)mitochondrial
754252.PFREUD_24740(PF13683) (PF13276)mitochondrial
754252.PFREUD_24630(PF13683) (PF13276)mitochondrial
754252.PFREUD_24670(PF00665)(mitochondrial)
754252.PFREUD_25020(PF00665)(mitochondrial)
754252.PFREUD_24500PF01610(mitochondrial)
754252.PFREUD_23620(PF04188)ER
754252.PFREUD_24560PF01610(mitochondrial)
754252.PFREUD_24790PF01610(mitochondrial)
754252.PFREUD_24460(PF00665)(ER); (plastid)
754252.PFREUD_24320(PF13276) (PF00665)
754252.PFREUD_24680(PF00665)plastid
754252.PFREUD_24440(PF00665)(mitochondrial)
754252.PFREUD_24990(PF13276) (PF00665)
754252.PFREUD_24770(PF13276) (PF00665)
754252.PFREUD_24980(PF00665)(mitochondrial)
754252.PFREUD_24430(PF13276) (PF00665)
754252.PFREUD_24530PF01610(ER)
754252.PFREUD_24710(PF13276) (PF00665)
754252.PFREUD_24290(PF13276) (PF00665)
754252.PFREUD_24410(PF13276) (PF00665)
754252.PFREUD_25170PF05225 (PF00665)
754252.PFREUD_24640PF05225 (PF00665)
754252.PFREUD_24900(PF13276) (PF00665)
754252.PFREUD_24340(PF13276) (PF00665)
754252.PFREUD_24650(PF13276) (PF00665)
754252.PFREUD_24930(PF13276) (PF00665)
754252.PFREUD_22560(PF00665)
754252.PFREUD_25030PF01610
754252.PFREUD_24920PF01610
754252.PFREUD_24490PF01610
754252.PFREUD_24780(PF01527)
754252.PFREUD_24860PF01610
754252.PFREUD_24260PF01610
754252.PFREUD_24870PF01610
754252.PFREUD_24270PF01610
754252.PFREUD_24450PF01610
754252.PFREUD_25000(PF01527)
754252.PFREUD_24840(PF00665)
754252.PFREUD_24510(PF01527)
754252.PFREUD_24420(PF01527)
754252.PFREUD_24730PF01610
754252.PFREUD_25070(PF00665)
754252.PFREUD_24850(PF01527)
754252.PFREUD_24720(PF01527)
754252.PFREUD_24400(PF01527)
754252.PFREUD_25110(PF01527)
754252.PFREUD_25060PF01610
754252.PFREUD_24880PF01610
754252.PFREUD_25120PF01610
754252.PFREUD_25050(PF01527)
754252.PFREUD_24890(PF01527)
754252.PFREUD_24230PF01610
754252.PFREUD_25130PF01610
754252.PFREUD_24950PF01610
754252.PFREUD_24600(PF01527)
754252.PFREUD_25090PF01610
754252.PFREUD_25140PF01610
754252.PFREUD_24940(PF01527)
754252.PFREUD_20080PF08213not used
754252.PFREUD_24760PF01610
754252.PFREUD_25150(PF01527)
754252.PFREUD_24970(PF00665)
754252.PFREUD_24280(PF01527)
754252.PFREUD_24750(PF01527)
754252.PFREUD_24590PF01610
754252.PFREUD_24620(PF01527)
754252.PFREUD_24960(PF00665)
754252.PFREUD_24360PF01610
754252.PFREUD_24580PF01610
754252.PFREUD_22350(PF05495)
754252.PFREUD_24910PF01610
754252.PFREUD_24350(PF01527)
754252.PFREUD_24820(PF13683)
754252.PFREUD_23680(PF13910)
754252.PFREUD_24330(PF01527)
754252.PFREUD_24240(PF01527)
754252.PFREUD_24480PF01610
754252.PFREUD_19500(PF04188)
754252.PFREUD_24660(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================