Effective results for Dysgonomonas gadei ATCC BAA-286 (eggnog40)
Summary
Number of putative secreted proteins: 335
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 62 eukaryotic-like domains, contained in 335 proteins (34 high, 301 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 742766.HMPREF9455_01474 | (PF00703) (PF16353) (PF02836) (PF02837) (PF02929) | ER | |||
| 742766.HMPREF9455_01674 | (PF16353) (PF00703) (PF02929) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_04144 | (PF00703) (PF02929) (PF16353) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_03367 | (PF00703) (PF16353) (PF02836) (PF02837) (PF02929) | ER | |||
| 742766.HMPREF9455_01579 | (PF00703) (PF02929) (PF16353) (PF02837) (PF02836) | ER | |||
| 742766.HMPREF9455_02489 | (PF16353) (PF02929) (PF00703) (PF02837) (PF02836) | ER | |||
| 742766.HMPREF9455_00294 | (PF00703) (PF16355) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_03279 | PF16334 PF08760 PF16335 PF17168 | ER | |||
| 742766.HMPREF9455_03470 | (PF00703) (PF16355) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_00088 | (PF00703) (PF16355) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_01578 | (PF00703) (PF16355) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_03858 | PF16334 PF08760 PF16335 PF17168 | ER | |||
| 742766.HMPREF9455_01552 | (PF00703) (PF16355) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_00299 | (PF16338) (PF07691) (PF17137) | ER | |||
| 742766.HMPREF9455_00400 | (PF00703) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_03857 | (PF00703) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_03453 | (PF00703) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_02491 | (PF00703) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_02354 | (PF00703) (PF02836) (PF02837) | ER | |||
| 742766.HMPREF9455_01620 | (PF04616) (PF02156) | ER | |||
| 742766.HMPREF9455_00737 | (PF00703) (PF02836) | ER | |||
| 742766.HMPREF9455_01569 | (PF16338) (PF17137) | ER | |||
| 742766.HMPREF9455_00418 | (PF16990) (PF02156) | ER | |||
| 742766.HMPREF9455_01685 | (PF16338) (PF17137) | ER | |||
| 742766.HMPREF9455_01783 | PF03727 PF00349 | (mitochondrial) | |||
| 742766.HMPREF9455_00331 | PF07971 (PF14683) | ER | |||
| 742766.HMPREF9455_00323 | (PF16338) (PF17137) | ER | |||
| 742766.HMPREF9455_00268 | PF07971 (PF07691) | ER | |||
| 742766.HMPREF9455_01615 | (PF16990) (PF02156) | ER | |||
| 742766.HMPREF9455_01614 | (PF16990) (PF02156) | ER | |||
| 742766.HMPREF9455_03903 | (PF07470) | ER | |||
| 742766.HMPREF9455_01452 | (PF03629) | ER | |||
| 742766.HMPREF9455_04006 | (PF07715) | ER | |||
| 742766.HMPREF9455_03290 | (PF07715) | (ER) | |||
| 742766.HMPREF9455_01673 | (PF04616) | ER | |||
| 742766.HMPREF9455_01672 | (PF04616) | ER | |||
| 742766.HMPREF9455_01671 | (PF04616) | ER | |||
| 742766.HMPREF9455_02348 | (PF07715) | ER | |||
| 742766.HMPREF9455_02340 | (PF00295) | ER | |||
| 742766.HMPREF9455_02341 | (PF07470) | ER | |||
| 742766.HMPREF9455_02344 | (PF07470) | ER | |||
| 742766.HMPREF9455_02506 | (PF00703) (PF02836) (PF02837) | ||||
| 742766.HMPREF9455_02508 | (PF07715) | ER | |||
| 742766.HMPREF9455_02509 | (PF05592) | ER | |||
| 742766.HMPREF9455_00653 | (PF07715) | (mitochondrial) | |||
| 742766.HMPREF9455_00496 | (PF07715) | ER | |||
| 742766.HMPREF9455_02479 | (PF11175) | ER | |||
| 742766.HMPREF9455_01388 | (PF04616) | ER | |||
| 742766.HMPREF9455_01386 | (PF07715) | (ER); ER | |||
| 742766.HMPREF9455_03280 | PF07971 | ER | |||
| 742766.HMPREF9455_03358 | PF06824 | ER | |||
| 742766.HMPREF9455_03359 | PF07971 | ER | |||
| 742766.HMPREF9455_03357 | PF03663 | ER | |||
| 742766.HMPREF9455_02534 | (PF07715) | ER | |||
| 742766.HMPREF9455_02531 | (PF07715) | (ER); (mitochondrial) | |||
| 742766.HMPREF9455_02669 | (PF07715) | ER | |||
| 742766.HMPREF9455_02393 | (PF04616) | ER | |||
| 742766.HMPREF9455_02392 | (PF07470) | ER | |||
| 742766.HMPREF9455_02397 | (PF07944) | ER | |||
| 742766.HMPREF9455_02396 | (PF00295) | ER | |||
| 742766.HMPREF9455_00392 | (PF06439) | ER | |||
| 742766.HMPREF9455_00394 | (PF06439) | ER | |||
| 742766.HMPREF9455_01065 | (PF07715) | (mitochondrial) | |||
| 742766.HMPREF9455_01479 | (PF07944) | ER | |||
| 742766.HMPREF9455_01477 | (PF04616) | ER | |||
| 742766.HMPREF9455_01476 | (PF07944) | ER | |||
| 742766.HMPREF9455_03438 | PF07971 | ER | |||
| 742766.HMPREF9455_01382 | (PF04616) | ER | |||
| 742766.HMPREF9455_01384 | (PF07715) | (mitochondrial); (ER) | |||
| 742766.HMPREF9455_01490 | (PF07715) | ER | |||
| 742766.HMPREF9455_02521 | (PF07715) | ER | |||
| 742766.HMPREF9455_02526 | (PF06439) | ER | |||
| 742766.HMPREF9455_02523 | (PF07470) | ER | |||
| 742766.HMPREF9455_02417 | (PF06439) | ER | |||
| 742766.HMPREF9455_02410 | (PF07715) | ER | |||
| 742766.HMPREF9455_00383 | (PF07715) | ER | |||
| 742766.HMPREF9455_00389 | (PF07715) | ER | |||
| 742766.HMPREF9455_01121 | PF04733 | ER | |||
| 742766.HMPREF9455_04145 | (PF07470) | ER | |||
| 742766.HMPREF9455_04039 | (PF07715) | ER | |||
| 742766.HMPREF9455_01390 | (PF04616) | ER | |||
| 742766.HMPREF9455_03735 | (PF04616) | ER | |||
| 742766.HMPREF9455_00739 | (PF07715) | ER | |||
| 742766.HMPREF9455_01648 | (PF07715) | ER | |||
| 742766.HMPREF9455_00735 | (PF07470) | ER | |||
| 742766.HMPREF9455_03423 | (PF07715) | (mitochondrial) | |||
| 742766.HMPREF9455_02064 | (PF07715) | ER | |||
| 742766.HMPREF9455_02266 | (PF07715) | ER | |||
| 742766.HMPREF9455_02460 | PF07971 | (ER) | |||
| 742766.HMPREF9455_02467 | (PF11175) | ER | |||
| 742766.HMPREF9455_01867 | (PF04616) | ER | |||
| 742766.HMPREF9455_02287 | (PF00328) | ER | |||
| 742766.HMPREF9455_02285 | (PF07715) | ER | |||
| 742766.HMPREF9455_00282 | (PF07715) | (ER) | |||
| 742766.HMPREF9455_01254 | (PF07715) | ER | |||
| 742766.HMPREF9455_04043 | (PF07715) | ER | |||
| 742766.HMPREF9455_03413 | (PF07715) | ER | |||
| 742766.HMPREF9455_02913 | (PF04616) | ER | |||
| 742766.HMPREF9455_02471 | (PF11175) | ER | |||
| 742766.HMPREF9455_02473 | (PF07715) | ER | |||
| 742766.HMPREF9455_02476 | (PF07715) | ER | |||
| 742766.HMPREF9455_01810 | (PF07715) | ER | |||
| 742766.HMPREF9455_01104 | (PF13905) | ER | |||
| 742766.HMPREF9455_00348 | (PF03415) | ER | |||
| 742766.HMPREF9455_00349 | (PF13905) | ER | |||
| 742766.HMPREF9455_03240 | PF07971 | ER | |||
| 742766.HMPREF9455_02449 | (PF00703) | ER | |||
| 742766.HMPREF9455_02448 | (PF05592) | ER | |||
| 742766.HMPREF9455_02447 | (PF05592) | ER | |||
| 742766.HMPREF9455_01800 | (PF07075) | ER | |||
| 742766.HMPREF9455_00403 | (PF07715) | ER | |||
| 742766.HMPREF9455_00408 | (PF07691) | ER | |||
| 742766.HMPREF9455_02131 | (PF13905) | ER | |||
| 742766.HMPREF9455_03989 | PF07971 | ER | |||
| 742766.HMPREF9455_03986 | (PF07715) | ER | |||
| 742766.HMPREF9455_00378 | (PF07715) | mitochondrial | |||
| 742766.HMPREF9455_01585 | (PF07715) | (ER); (mitochondrial) | |||
| 742766.HMPREF9455_01587 | (PF07715) | ER | |||
| 742766.HMPREF9455_01581 | (PF07944) | ER | |||
| 742766.HMPREF9455_04060 | (PF07715) | ER | |||
| 742766.HMPREF9455_01464 | (PF07715) | ER | |||
| 742766.HMPREF9455_03366 | PF03663 | ER | |||
| 742766.HMPREF9455_02830 | (PF07715) | ER | |||
| 742766.HMPREF9455_02834 | (PF07715) | (mitochondrial) | |||
| 742766.HMPREF9455_02836 | (PF07715) | ER | |||
| 742766.HMPREF9455_01691 | (PF14498) | ER | |||
| 742766.HMPREF9455_01690 | (PF03629) | ER | |||
| 742766.HMPREF9455_01693 | (PF07715) | ER | |||
| 742766.HMPREF9455_01695 | (PF07715) | ER | |||
| 742766.HMPREF9455_02580 | (PF07715) | ER | |||
| 742766.HMPREF9455_02057 | (PF13905) | ER | |||
| 742766.HMPREF9455_02450 | PF07971 | ER | |||
| 742766.HMPREF9455_01900 | (PF07715) | ER | |||
| 742766.HMPREF9455_01905 | (PF07691) | ER | |||
| 742766.HMPREF9455_00417 | (PF06439) | ER | |||
| 742766.HMPREF9455_00412 | (PF02156) | ER | |||
| 742766.HMPREF9455_02125 | (PF07715) | mitochondrial | |||
| 742766.HMPREF9455_00961 | (PF07715) | ER | |||
| 742766.HMPREF9455_03999 | (PF07715) | ER | |||
| 742766.HMPREF9455_01164 | (PF05592) | ER | |||
| 742766.HMPREF9455_00367 | (PF07715) | ER | |||
| 742766.HMPREF9455_01356 | (PF14498) | ER | |||
| 742766.HMPREF9455_01686 | (PF04616) | ER | |||
| 742766.HMPREF9455_01687 | (PF07691) | ER | |||
| 742766.HMPREF9455_01680 | (PF04616) | (mitochondrial) | |||
| 742766.HMPREF9455_01689 | (PF04616) | ER | |||
| 742766.HMPREF9455_03467 | (PF07715) | ER | |||
| 742766.HMPREF9455_01573 | (PF07715) | ER | |||
| 742766.HMPREF9455_00083 | (PF07715) | ER | |||
| 742766.HMPREF9455_02485 | (PF07715) | ER | |||
| 742766.HMPREF9455_02336 | (PF04616) | ER | |||
| 742766.HMPREF9455_02332 | (PF07470) | ER | |||
| 742766.HMPREF9455_02331 | (PF00295) | ER | |||
| 742766.HMPREF9455_00421 | (PF07715) | ER | |||
| 742766.HMPREF9455_00423 | (PF00295) | ER | |||
| 742766.HMPREF9455_00424 | (PF00295) | ER | |||
| 742766.HMPREF9455_03859 | (PF07944) | ER | |||
| 742766.HMPREF9455_00319 | (PF07944) | ER | |||
| 742766.HMPREF9455_01368 | (PF16338) | ER | |||
| 742766.HMPREF9455_01360 | (PF07715) | (ER) | |||
| 742766.HMPREF9455_01365 | PF07971 | ER | |||
| 742766.HMPREF9455_01364 | (PF04616) | ER | |||
| 742766.HMPREF9455_01366 | (PF04616) | ER | |||
| 742766.HMPREF9455_00169 | (PF06439) | ER | |||
| 742766.HMPREF9455_03455 | (PF07715) | ER | |||
| 742766.HMPREF9455_03325 | (PF06439) | ER | |||
| 742766.HMPREF9455_03452 | (PF07715) | ER | |||
| 742766.HMPREF9455_01549 | (PF03629) | ER | |||
| 742766.HMPREF9455_03522 | (PF07715) | ER | |||
| 742766.HMPREF9455_00548 | (PF07715) | ER | |||
| 742766.HMPREF9455_02328 | (PF07715) | ER | |||
| 742766.HMPREF9455_02322 | (PF07715) | ER | |||
| 742766.HMPREF9455_00437 | (PF14498) | ER | |||
| 742766.HMPREF9455_03840 | (PF04616) | ER | |||
| 742766.HMPREF9455_00301 | (PF14498) | ER | |||
| 742766.HMPREF9455_00304 | (PF04616) | ER | |||
| 742766.HMPREF9455_01374 | (PF04616) | ER | |||
| 742766.HMPREF9455_01373 | (PF04616) | ER | |||
| 742766.HMPREF9455_01370 | (PF07691) | ER | |||
| 742766.HMPREF9455_01555 | (PF07715) | ER | |||
| 742766.HMPREF9455_01553 | (PF04616) | ER | |||
| 742766.HMPREF9455_01550 | (PF04616) | ER | |||
| 742766.HMPREF9455_01799 | (PF03092) | ER; (ER) | |||
| 742766.HMPREF9455_03534 | (PF07715) | ER | |||
| 742766.HMPREF9455_03532 | PF03663 | ER | |||
| 742766.HMPREF9455_02798 | (PF07075) | ER | |||
| 742766.HMPREF9455_02175 | PF07971 | ER | |||
| 742766.HMPREF9455_02174 | PF07971 | ER | |||
| 742766.HMPREF9455_02178 | (PF07715) | (ER); (mitochondrial) | |||
| 742766.HMPREF9455_01150 | (PF13905) | ER | |||
| 742766.HMPREF9455_00334 | (PF07715) | ER | |||
| 742766.HMPREF9455_00333 | PF07971 | ER | |||
| 742766.HMPREF9455_02947 | (PF07715) | ER | |||
| 742766.HMPREF9455_01419 | (PF07715) | ER | |||
| 742766.HMPREF9455_03238 | PF07971 | ER | |||
| 742766.HMPREF9455_03235 | (PF07715) | mitochondrial | |||
| 742766.HMPREF9455_03237 | (PF04450) | ER | |||
| 742766.HMPREF9455_03788 | (PF13905) | ER | |||
| 742766.HMPREF9455_02545 | (PF00328) | ER | |||
| 742766.HMPREF9455_02546 | (PF00295) | ER | |||
| 742766.HMPREF9455_01580 | (PF04616) | ER | |||
| 742766.HMPREF9455_02307 | (PF07715) | (ER) | |||
| 742766.HMPREF9455_02305 | (PF07715) | (ER) | |||
| 742766.HMPREF9455_01582 | (PF02836) | ER | |||
| 742766.HMPREF9455_02309 | (PF07075) | ER | |||
| 742766.HMPREF9455_01948 | (PF07715) | ER | |||
| 742766.HMPREF9455_01944 | (PF00703) | ER | |||
| 742766.HMPREF9455_01090 | (PF06439) | ER | |||
| 742766.HMPREF9455_00322 | (PF04616) | ER | |||
| 742766.HMPREF9455_00327 | (PF07715) | ER | |||
| 742766.HMPREF9455_01405 | (PF07715) | ER | |||
| 742766.HMPREF9455_01538 | (PF05592) | ER | |||
| 742766.HMPREF9455_00594 | (PF07715) | ER | |||
| 742766.HMPREF9455_02197 | (PF13905) | ER | |||
| 742766.HMPREF9455_02689 | (PF07715) | ER | |||
| 742766.HMPREF9455_00866 | (PF04616) | ER | |||
| 742766.HMPREF9455_01329 | (PF06439) | ER | |||
| 742766.HMPREF9455_00265 | (PF07691) | ER | |||
| 742766.HMPREF9455_00120 | PF03663 | ER | |||
| 742766.HMPREF9455_00121 | (PF07715) | ER | |||
| 742766.HMPREF9455_00127 | (PF07715) | mitochondrial | |||
| 742766.HMPREF9455_01431 | (PF04616) | ER | |||
| 742766.HMPREF9455_00690 | (PF07715) | ER | |||
| 742766.HMPREF9455_01505 | (PF06439) | ER | |||
| 742766.HMPREF9455_03363 | (PF07715) | ER | |||
| 742766.HMPREF9455_01610 | (PF00703) | ER | |||
| 742766.HMPREF9455_01613 | (PF04616) | ER | |||
| 742766.HMPREF9455_01612 | (PF02156) | ER | |||
| 742766.HMPREF9455_02180 | (PF04041) | ER | |||
| 742766.HMPREF9455_02456 | (PF07715) | ER | |||
| 742766.HMPREF9455_02454 | (PF07715) | ER | |||
| 742766.HMPREF9455_01426 | PF07971 | ER | |||
| 742766.HMPREF9455_01424 | PF06824 | ER | |||
| 742766.HMPREF9455_01425 | (PF05592) | ER | |||
| 742766.HMPREF9455_01422 | PF03663 | ER | |||
| 742766.HMPREF9455_01423 | PF03663 | ER | |||
| 742766.HMPREF9455_00115 | PF07971 | ER | |||
| 742766.HMPREF9455_00117 | PF06824 | ER | |||
| 742766.HMPREF9455_00116 | PF07971 | ER | |||
| 742766.HMPREF9455_01428 | (PF07715) | ER | |||
| 742766.HMPREF9455_01510 | (PF07715) | ER | |||
| 742766.HMPREF9455_00065 | PF12812 | ER | |||
| 742766.HMPREF9455_01607 | (PF07715) | ER | |||
| 742766.HMPREF9455_02359 | (PF04616) | ER | |||
| 742766.HMPREF9455_02350 | (PF04616) | ER | |||
| 742766.HMPREF9455_02519 | (PF04616) | ER | |||
| 742766.HMPREF9455_03591 | (PF03432) | mitochondrial | |||
| 742766.HMPREF9455_03416 | (PF03415) | (mitochondrial) | |||
| 742766.HMPREF9455_00298 | (PF07715) | (mitochondrial) | |||
| 742766.HMPREF9455_01801 | (PF06439) | (ER) | |||
| 742766.HMPREF9455_01469 | (PF07837) (PF02971) | ||||
| 742766.HMPREF9455_02494 | (PF07715) | (mitochondrial) | |||
| 742766.HMPREF9455_01404 | (PF05970) (PF02689) | ||||
| 742766.HMPREF9455_03615 | (PF02485) | (mitochondrial) | |||
| 742766.HMPREF9455_01183 | (PF04616) | (plastid) | |||
| 742766.HMPREF9455_00270 | (PF07715) | (plastid) | |||
| 742766.HMPREF9455_02357 | (PF07715) | (mitochondrial) | |||
| 742766.HMPREF9455_00107 | (PF07715) | ||||
| 742766.HMPREF9455_04152 | (PF13551) | ||||
| 742766.HMPREF9455_01622 | (PF03432) | ||||
| 742766.HMPREF9455_03340 | (PF13384) | ||||
| 742766.HMPREF9455_01707 | (PF01695) | not used | |||
| 742766.HMPREF9455_01708 | (PF13384) | ||||
| 742766.HMPREF9455_00814 | (PF03432) | ||||
| 742766.HMPREF9455_04012 | (PF07715) | ||||
| 742766.HMPREF9455_03281 | PF06824 | ||||
| 742766.HMPREF9455_01668 | (PF03432) | ||||
| 742766.HMPREF9455_02085 | (PF05192) | ||||
| 742766.HMPREF9455_02082 | (PF04505) | ||||
| 742766.HMPREF9455_02713 | (PF00327) | not used | |||
| 742766.HMPREF9455_04029 | (PF01695) | not used | |||
| 742766.HMPREF9455_03727 | (PF01695) | ||||
| 742766.HMPREF9455_03728 | (PF13384) | ||||
| 742766.HMPREF9455_03385 | (PF13906) | ||||
| 742766.HMPREF9455_03430 | (PF00165) | ||||
| 742766.HMPREF9455_02252 | (PF16401) | ||||
| 742766.HMPREF9455_04148 | (PF13384) | ||||
| 742766.HMPREF9455_04149 | (PF01695) | ||||
| 742766.HMPREF9455_01487 | (PF04041) | ||||
| 742766.HMPREF9455_01483 | (PF07715) | ||||
| 742766.HMPREF9455_01738 | (PF07715) | ||||
| 742766.HMPREF9455_00619 | (PF13551) | ||||
| 742766.HMPREF9455_03674 | (PF02796) | ||||
| 742766.HMPREF9455_00501 | (PF07715) | ||||
| 742766.HMPREF9455_00293 | (PF16401) | ||||
| 742766.HMPREF9455_00343 | (PF07715) | ||||
| 742766.HMPREF9455_04050 | (PF00327) | ||||
| 742766.HMPREF9455_00195 | (PF13551) | ||||
| 742766.HMPREF9455_03084 | (PF13384) | ||||
| 742766.HMPREF9455_02623 | (PF16011) | ||||
| 742766.HMPREF9455_01584 | (PF03629) | ||||
| 742766.HMPREF9455_03278 | (PF01715) | ||||
| 742766.HMPREF9455_03476 | (PF13384) | ||||
| 742766.HMPREF9455_03051 | (PF03432) | ||||
| 742766.HMPREF9455_02054 | (PF02796) | ||||
| 742766.HMPREF9455_03698 | (PF03432) | ||||
| 742766.HMPREF9455_01909 | (PF16314) | ||||
| 742766.HMPREF9455_01902 | (PF07715) | ||||
| 742766.HMPREF9455_00416 | (PF04041) | ||||
| 742766.HMPREF9455_03993 | (PF07715) | ||||
| 742766.HMPREF9455_01222 | (PF02485) | ||||
| 742766.HMPREF9455_01599 | (PF01695) | ||||
| 742766.HMPREF9455_01681 | (PF04616) | ||||
| 742766.HMPREF9455_00777 | (PF01695) | ||||
| 742766.HMPREF9455_01369 | (PF17137) | ||||
| 742766.HMPREF9455_03213 | (PF05192) | ||||
| 742766.HMPREF9455_01546 | (PF04616) | ||||
| 742766.HMPREF9455_00894 | (PF02796) | ||||
| 742766.HMPREF9455_01797 | PF16269 | ||||
| 742766.HMPREF9455_03022 | (PF02796) | ||||
| 742766.HMPREF9455_03830 | (PF13384) | ||||
| 742766.HMPREF9455_00933 | (PF01715) | ||||
| 742766.HMPREF9455_01309 | (PF04505) | ||||
| 742766.HMPREF9455_02548 | (PF01695) | not used | |||
| 742766.HMPREF9455_02540 | (PF07715) | ||||
| 742766.HMPREF9455_02403 | (PF07715) | ||||
| 742766.HMPREF9455_03160 | (PF01531) | ||||
| 742766.HMPREF9455_00623 | (PF13551) | ||||
| 742766.HMPREF9455_01941 | (PF02796) | ||||
| 742766.HMPREF9455_01943 | (PF14498) | ||||
| 742766.HMPREF9455_01093 | (PF05192) | ||||
| 742766.HMPREF9455_02972 | (PF05693) | ||||
| 742766.HMPREF9455_04129 | (PF01695) | not used | |||
| 742766.HMPREF9455_03814 | (PF07715) | ||||
| 742766.HMPREF9455_03816 | PF07971 | ||||
| 742766.HMPREF9455_00586 | (PF01531) | ||||
| 742766.HMPREF9455_00580 | (PF01531) | ||||
| 742766.HMPREF9455_01616 | (PF04041) | ||||
| 742766.HMPREF9455_03368 | (PF03432) | ||||
| 742766.HMPREF9455_02365 | (PF02796) | ||||
| 742766.HMPREF9455_02693 | (PF02796) | ||||
| 742766.HMPREF9455_00114 | (PF04041) | ||||
| 742766.HMPREF9455_03579 | (PF05970) | ||||
| 742766.HMPREF9455_02356 | (PF13384) | ||||
| 742766.HMPREF9455_03608 | (PF01695) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
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