Effective results for Ruminococcus bromii L2-63 (eggnog40)

Summary

Number of putative secreted proteins: 32
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 12 eukaryotic-like domains, contained in 32 proteins (1 high, 31 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
657321.RBR_07410				(PF04432)	(mitochondrial); mitochondrial
657321.RBR_18860				(PF13306)	ER
657321.RBR_03890				(PF13306)	ER
657321.RBR_19520				(PF05257)	ER
657321.RBR_02970				(PF13306)	ER
657321.RBR_17820				(PF01992)	(mitochondrial); mitochondrial
657321.RBR_09520				(PF13306)	ER
657321.RBR_09140				(PF13306)	ER
657321.RBR_02990				(PF13306)	ER
657321.RBR_12220				(PF01813)	(mitochondrial)
657321.RBR_17890				(PF01813)	(mitochondrial)
657321.RBR_03480				(PF13306)	ER
657321.RBR_08840				(PF13306)	ER
657321.RBR_17960				(PF13306)	ER
657321.RBR_21130				(PF05257)
657321.RBR_04270				(PF02943)
657321.RBR_12260				(PF01992)
657321.RBR_01940				(PF02938)
657321.RBR_09030				PF02407
657321.RBR_17850				(PF01990)
657321.RBR_20580				(PF04991)
657321.RBR_00450				(PF05257)
657321.RBR_17860				(PF01991)
657321.RBR_03460				(PF13507)
657321.RBR_06220				(PF02938)
657321.RBR_11100				(PF04991)
657321.RBR_14980				(PF04991)
657321.RBR_07420				(PF04432)
657321.RBR_17420				(PF05257)
657321.RBR_07340				(PF04432)
657321.RBR_12250				(PF01990)
657321.RBR_03500				(PF13507)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================