Metamenu

Effective results for Halanaerobium hydrogeniformans (eggnog40)

Summary

Number of putative secreted proteins: 77
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 77 proteins (1 high, 76 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
656519.Halsa_1243(PF00665) (PF13276)(mitochondrial); mitochondrial
656519.Halsa_0606(PF00665) (PF13276)mitochondrial
656519.Halsa_1041(PF00665) (PF13276)mitochondrial
656519.Halsa_0573(PF00665) (PF13276)mitochondrial
656519.Halsa_1486(PF00665) (PF13276)mitochondrial
656519.Halsa_0235(PF00665) (PF13276)mitochondrial
656519.Halsa_2324(PF00665) (PF13276)mitochondrial
656519.Halsa_1073(PF00665) (PF13276)(mitochondrial)
656519.Halsa_0619(PF00665) (PF13276)(mitochondrial)
656519.Halsa_2346(PF02844) (PF02843)(mitochondrial)
656519.Halsa_0050(PF00665) (PF13276)(mitochondrial)
656519.Halsa_0552(PF00665) (PF13276)(mitochondrial)
656519.Halsa_1946(PF13638)ER
656519.Halsa_0542(PF00665) (PF13276)(mitochondrial)
656519.Halsa_0579(PF00665) (PF13276)(mitochondrial)
656519.Halsa_1026(PF01527) (PF00665) (PF13276)
656519.Halsa_1791(PF00665) (PF13276)(mitochondrial)
656519.Halsa_0222(PF01527) (PF00665) (PF13276)
656519.Halsa_2327(PF00665) (PF13276)(mitochondrial)
656519.Halsa_1108PF01745(mitochondrial)
656519.Halsa_0042(PF01527) (PF00665) (PF13276)
656519.Halsa_0054(PF00665) (PF13276)
656519.Halsa_1261(PF13936) (PF00665)
656519.Halsa_0581(PF13936) (PF00665)
656519.Halsa_2181(PF13936) (PF00665)
656519.Halsa_0051(PF13936) (PF00665)
656519.Halsa_2044(PF03059)(mitochondrial)
656519.Halsa_1796(PF13936) (PF00665)
656519.Halsa_1793(PF13936) (PF00665)
656519.Halsa_1484(PF13936) (PF00665)
656519.Halsa_1972(PF13936) (PF00665)
656519.Halsa_1166(PF13936) (PF00665)
656519.Halsa_2320(PF13936) (PF00665)
656519.Halsa_0253(PF13936) (PF00665)
656519.Halsa_2254(PF02844) (PF02843)
656519.Halsa_1242(PF01527)
656519.Halsa_0703(PF16983)
656519.Halsa_0053(PF01527)
656519.Halsa_1459(PF03652)
656519.Halsa_1085(PF00882)
656519.Halsa_0605(PF01527)
656519.Halsa_1465(PF14792)
656519.Halsa_0591(PF01527)
656519.Halsa_1072(PF01527)
656519.Halsa_0614(PF01527)
656519.Halsa_0611(PF00665)
656519.Halsa_1524(PF13638)
656519.Halsa_0623(PF09370)
656519.Halsa_0620(PF01527)
656519.Halsa_0627(PF09370)
656519.Halsa_0625(PF09370)
656519.Halsa_1680(PF11969)
656519.Halsa_0551(PF01527)
656519.Halsa_0012(PF07892)
656519.Halsa_1040(PF01527)
656519.Halsa_0543(PF01527)
656519.Halsa_0204(PF16952)
656519.Halsa_0972(PF14512)
656519.Halsa_1031(PF00665)
656519.Halsa_0572(PF01527)
656519.Halsa_0578(PF01527)
656519.Halsa_2316(PF00665)
656519.Halsa_1790(PF01527)
656519.Halsa_1485(PF01527)
656519.Halsa_0772(PF00862)
656519.Halsa_0220(PF01527)
656519.Halsa_2058(PF00882)
656519.Halsa_0231(PF13638)
656519.Halsa_0234(PF01527)
656519.Halsa_0433(PF00665)
656519.Halsa_0430(PF03652)
656519.Halsa_2326(PF01527)
656519.Halsa_2323(PF01527)
656519.Halsa_2100(PF03266)
656519.Halsa_1623(PF07892)
656519.Halsa_0665(PF14512)
656519.Halsa_0049(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================