Effective results for Desulfovibrio sp. FW1012B (eggnog40)
Summary
Number of putative secreted proteins: 183
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 183 proteins (4 high, 179 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 644968.DFW101_2498 | (PF01627) (PF13188) | ER; (ER) | |||
| 644968.DFW101_0512 | (PF00037) (PF13187) | (mitochondrial) | |||
| 644968.DFW101_0696 | (PF13188) (PF08448) | ER | |||
| 644968.DFW101_2271 | (PF01627) (PF08448) | mitochondrial | |||
| 644968.DFW101_1462 | (PF13188) (PF08448) | (ER) | |||
| 644968.DFW101_2761 | (PF01326) | (mitochondrial) | |||
| 644968.DFW101_3362 | (PF00037) | ER | |||
| 644968.DFW101_3149 | (PF08448) | ER; (ER) | |||
| 644968.DFW101_2775 | (PF08448) | ER | |||
| 644968.DFW101_0603 | (PF02754) | ER | |||
| 644968.DFW101_2391 | (PF07885) | ER | |||
| 644968.DFW101_2234 | (PF00037) | mitochondrial | |||
| 644968.DFW101_1376 | (PF16561) | (mitochondrial) | |||
| 644968.DFW101_1599 | (PF08448) | (ER); ER | |||
| 644968.DFW101_2005 | (PF13187) | ER | |||
| 644968.DFW101_1976 | (PF13237) | mitochondrial; (mitochondrial) | |||
| 644968.DFW101_0052 | (PF07885) | ER | |||
| 644968.DFW101_0364 | (PF08448) | ER | |||
| 644968.DFW101_2213 | (PF08448) | ER | |||
| 644968.DFW101_3070 | (PF08448) | ER | |||
| 644968.DFW101_1104 | (PF08448) | ER | |||
| 644968.DFW101_2453 | (PF08448) | (ER) | |||
| 644968.DFW101_3468 | (PF13524) | ER | |||
| 644968.DFW101_3088 | (PF08448) | mitochondrial | |||
| 644968.DFW101_1005 | (PF08448) | (ER) | |||
| 644968.DFW101_1831 | (PF08448) | (ER); ER | |||
| 644968.DFW101_2903 | (PF13534) | (mitochondrial) | |||
| 644968.DFW101_3400 | (PF04187) | mitochondrial | |||
| 644968.DFW101_0536 | (PF13188) | ER | |||
| 644968.DFW101_1253 | (PF07885) | ER | |||
| 644968.DFW101_2255 | (PF08448) | ER | |||
| 644968.DFW101_1923 | (PF05014) | (ER) | |||
| 644968.DFW101_1867 | (PF00037) | ER | |||
| 644968.DFW101_3321 | (PF01627) (PF13188) (PF08448) | ||||
| 644968.DFW101_0131 | (PF07885) | mitochondrial; plastid | |||
| 644968.DFW101_3107 | (PF01627) | ER | |||
| 644968.DFW101_2509 | (PF07885) | (mitochondrial) | |||
| 644968.DFW101_0486 | (PF08448) | ER | |||
| 644968.DFW101_3341 | PF01591 | ER | |||
| 644968.DFW101_2758 | (PF01326) | mitochondrial | |||
| 644968.DFW101_0669 | (PF07885) | mitochondrial | |||
| 644968.DFW101_3152 | (PF13188) | ER | |||
| 644968.DFW101_1524 | (PF02873) | (plastid) | |||
| 644968.DFW101_1704 | PF13513 | (mitochondrial) | |||
| 644968.DFW101_3388 | (PF13565) (PF13683) | ||||
| 644968.DFW101_2540 | (PF13524) | (ER) | |||
| 644968.DFW101_0047 | (PF13565) (PF13683) | ||||
| 644968.DFW101_2557 | (PF13524) | (mitochondrial) | |||
| 644968.DFW101_1764 | (PF13565) (PF13683) | ||||
| 644968.DFW101_1625 | (PF00037) | (mitochondrial) | |||
| 644968.DFW101_3293 | (PF13565) (PF13683) | ||||
| 644968.DFW101_0371 | (PF02754) (PF13534) | ||||
| 644968.DFW101_2206 | (PF13188) (PF00037) | ||||
| 644968.DFW101_3647 | (PF13565) (PF13683) | ||||
| 644968.DFW101_0836 | (PF10609) | (mitochondrial) | |||
| 644968.DFW101_3096 | (PF00037) | (ER) | |||
| 644968.DFW101_2044 | (PF02754) (PF13534) | ||||
| 644968.DFW101_2264 | (PF13188) (PF08448) | ||||
| 644968.DFW101_2078 | (PF13524) | plastid | |||
| 644968.DFW101_2061 | (PF13565) (PF13683) | ||||
| 644968.DFW101_1458 | (PF08448) | (ER) | |||
| 644968.DFW101_2163 | (PF13565) (PF13683) | ||||
| 644968.DFW101_1982 | (PF13188) (PF08448) | ||||
| 644968.DFW101_0583 | (PF01627) (PF08448) | ||||
| 644968.DFW101_2624 | (PF02754) (PF13534) | ||||
| 644968.DFW101_2371 | (PF13188) (PF08448) | ||||
| 644968.DFW101_1152 | (PF00037) | ||||
| 644968.DFW101_2613 | (PF01627) | ||||
| 644968.DFW101_1708 | (PF13237) | ||||
| 644968.DFW101_2389 | (PF13188) | ||||
| 644968.DFW101_0431 | (PF08448) | ||||
| 644968.DFW101_3381 | (PF01895) | ||||
| 644968.DFW101_3038 | PF14853 | ||||
| 644968.DFW101_0468 | (PF08448) | ||||
| 644968.DFW101_1142 | (PF02754) | ||||
| 644968.DFW101_2601 | (PF13237) | ||||
| 644968.DFW101_2600 | (PF00037) | ||||
| 644968.DFW101_1394 | (PF01610) | ||||
| 644968.DFW101_1397 | (PF01610) | ||||
| 644968.DFW101_2773 | (PF01627) | ||||
| 644968.DFW101_1779 | (PF13237) | ||||
| 644968.DFW101_3556 | (PF05014) | ||||
| 644968.DFW101_0421 | (PF13237) | ||||
| 644968.DFW101_3040 | (PF08448) | ||||
| 644968.DFW101_0635 | (PF16983) | ||||
| 644968.DFW101_0704 | (PF13534) | ||||
| 644968.DFW101_0388 | (PF01610) | ||||
| 644968.DFW101_1945 | (PF01610) | ||||
| 644968.DFW101_3055 | (PF01627) | ||||
| 644968.DFW101_1160 | (PF00037) | ||||
| 644968.DFW101_1377 | (PF13524) | ||||
| 644968.DFW101_0157 | (PF08448) | ||||
| 644968.DFW101_0409 | (PF01627) | ||||
| 644968.DFW101_0715 | (PF13187) | ||||
| 644968.DFW101_3267 | (PF08448) | ||||
| 644968.DFW101_3268 | (PF01627) | ||||
| 644968.DFW101_3067 | (PF01895) | ||||
| 644968.DFW101_2954 | (PF01610) | ||||
| 644968.DFW101_1564 | (PF08448) | ||||
| 644968.DFW101_2141 | (PF08448) | ||||
| 644968.DFW101_1292 | (PF01627) | ||||
| 644968.DFW101_3529 | (PF02732) | ||||
| 644968.DFW101_1588 | (PF08448) | ||||
| 644968.DFW101_1741 | (PF02754) | ||||
| 644968.DFW101_1637 | (PF13188) | ||||
| 644968.DFW101_3451 | (PF00037) | ||||
| 644968.DFW101_3183 | (PF01627) | ||||
| 644968.DFW101_0162 | (PF01875) | ||||
| 644968.DFW101_2215 | (PF00731) | ||||
| 644968.DFW101_3078 | (PF08448) | ||||
| 644968.DFW101_0217 | (PF13524) | ||||
| 644968.DFW101_1106 | (PF01895) | ||||
| 644968.DFW101_2858 | (PF01610) | ||||
| 644968.DFW101_1034 | (PF01610) | ||||
| 644968.DFW101_1038 | (PF16561) | ||||
| 644968.DFW101_1358 | (PF13188) | ||||
| 644968.DFW101_2118 | (PF01627) | ||||
| 644968.DFW101_0374 | (PF08448) | ||||
| 644968.DFW101_0775 | (PF10609) | ||||
| 644968.DFW101_3086 | (PF01326) | ||||
| 644968.DFW101_1130 | (PF04187) | ||||
| 644968.DFW101_1135 | (PF13187) | ||||
| 644968.DFW101_3649 | (PF13524) | ||||
| 644968.DFW101_2055 | (PF01875) | ||||
| 644968.DFW101_3470 | (PF00731) | ||||
| 644968.DFW101_1659 | (PF01627) | ||||
| 644968.DFW101_1658 | (PF01326) | ||||
| 644968.DFW101_0692 | (PF02754) | ||||
| 644968.DFW101_1830 | (PF02943) | ||||
| 644968.DFW101_2907 | (PF00731) | ||||
| 644968.DFW101_2471 | (PF08448) | ||||
| 644968.DFW101_2049 | (PF01326) | ||||
| 644968.DFW101_0825 | (PF01627) | ||||
| 644968.DFW101_0687 | (PF02754) | ||||
| 644968.DFW101_2313 | (PF01627) | ||||
| 644968.DFW101_2317 | (PF05014) | ||||
| 644968.DFW101_2914 | (PF01610) | ||||
| 644968.DFW101_1064 | (PF02732) | ||||
| 644968.DFW101_1256 | (PF01326) | ||||
| 644968.DFW101_0819 | (PF01627) | ||||
| 644968.DFW101_2783 | (PF08448) | ||||
| 644968.DFW101_3309 | (PF08448) | ||||
| 644968.DFW101_0030 | (PF13187) | ||||
| 644968.DFW101_0036 | (PF08448) | ||||
| 644968.DFW101_3127 | (PF01610) | ||||
| 644968.DFW101_2893 | (PF10609) | ||||
| 644968.DFW101_2891 | (PF08448) | ||||
| 644968.DFW101_2896 | (PF13187) | ||||
| 644968.DFW101_2897 | (PF00037) | ||||
| 644968.DFW101_0028 | (PF01610) | ||||
| 644968.DFW101_2333 | (PF08448) | ||||
| 644968.DFW101_0241 | (PF08448) | ||||
| 644968.DFW101_0242 | (PF08448) | ||||
| 644968.DFW101_1869 | (PF13187) | ||||
| 644968.DFW101_1041 | (PF08448) | ||||
| 644968.DFW101_2407 | (PF00037) | ||||
| 644968.DFW101_1455 | (PF08448) | ||||
| 644968.DFW101_0016 | (PF08448) | ||||
| 644968.DFW101_1873 | (PF13187) | ||||
| 644968.DFW101_1872 | (PF13187) | ||||
| 644968.DFW101_1204 | (PF08448) | ||||
| 644968.DFW101_1202 | (PF13237) | ||||
| 644968.DFW101_1200 | (PF01627) | ||||
| 644968.DFW101_2506 | (PF01627) | ||||
| 644968.DFW101_2507 | (PF01627) | ||||
| 644968.DFW101_1514 | (PF02754) | ||||
| 644968.DFW101_0649 | (PF01895) | ||||
| 644968.DFW101_0641 | (PF08448) | ||||
| 644968.DFW101_0488 | (PF13524) | ||||
| 644968.DFW101_2636 | (PF02754) | ||||
| 644968.DFW101_2637 | (PF13187) | ||||
| 644968.DFW101_2633 | (PF13534) | ||||
| 644968.DFW101_2185 | (PF02754) | ||||
| 644968.DFW101_0670 | PF11913 | ||||
| 644968.DFW101_2293 | (PF01895) | ||||
| 644968.DFW101_2164 | (PF02873) | ||||
| 644968.DFW101_1989 | (PF13188) | ||||
| 644968.DFW101_0459 | (PF02754) | ||||
| 644968.DFW101_3161 | (PF08448) | ||||
| 644968.DFW101_2199 | (PF00037) | ||||
| 644968.DFW101_1404 | (PF01610) | ||||
| 644968.DFW101_2176 | (PF08448) | ||||
| 644968.DFW101_3397 | (PF01627) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
