Effective results for Segniliparus rotundus DSM 44985 (eggnog40)

Summary

Number of putative secreted proteins: 37
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 37 proteins (7 high, 30 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
640132.Srot_1138(PF12899)mitochondrial
640132.Srot_2619(PF00648)ER
640132.Srot_2845(PF14021)
640132.Srot_2540(PF08354)
640132.Srot_2948(PF06013)
640132.Srot_2949(PF06013)
640132.Srot_2953(PF02575)
640132.Srot_1893(PF13810)
640132.Srot_0784(PF14021)
640132.Srot_0785(PF06013)
640132.Srot_0786(PF06013)
640132.Srot_1099(PF06013)
640132.Srot_0308(PF06013)
640132.Srot_0309(PF06013)
640132.Srot_2494(PF06013)
640132.Srot_2495(PF06013)
640132.Srot_2491PF04505
640132.Srot_2805(PF06013)
640132.Srot_2806(PF06013)
640132.Srot_2801(PF02575)
640132.Srot_0622(PF02575)
640132.Srot_2616PF04505
640132.Srot_1853PF04505
640132.Srot_1854PF04505
640132.Srot_0277PF04505
640132.Srot_1701(PF13810)
640132.Srot_1640PF08213not used
640132.Srot_1813(PF02575)
640132.Srot_0257(PF02575)
640132.Srot_2394(PF02575)
640132.Srot_0806PF02257
640132.Srot_0782(PF02575)
640132.Srot_2503(PF02575)
640132.Srot_0650(PF02575)
640132.Srot_2186(PF13810)
640132.Srot_1195(PF02575)
640132.Srot_0746(PF06013)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================