Metamenu

Effective results for Thalassobium sp. R2A62 (eggnog40)

Summary

Number of putative secreted proteins: 116
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 116 proteins (3 high, 113 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
633131.TR2A62_0636(PF08669) (PF16350) (PF01571)ER
633131.TR2A62_0637(PF08669) (PF16350) (PF01571)ER
633131.TR2A62_3256(PF08669) (PF16350) (PF01571)(ER)
633131.TR2A62_0122(PF08669) (PF16350) (PF01571)
633131.TR2A62_2511(PF14248)ER
633131.TR2A62_0220(PF05704)ER
633131.TR2A62_2329(PF08669) (PF16350) (PF01571)
633131.TR2A62_2446PF04750ER
633131.TR2A62_3008(PF08669) (PF16350) (PF01571)
633131.TR2A62_2999(PF02690)ER
633131.TR2A62_2332(PF08669) (PF16350) (PF01571)
633131.TR2A62_0206(PF13683)mitochondrial
633131.TR2A62_3544(PF03567)mitochondrial
633131.TR2A62_3379(PF13276) (PF00665)(mitochondrial)
633131.TR2A62_3202(PF02690)ER
633131.TR2A62_1546(PF14248)ER
633131.TR2A62_2750(PF03209)ER
633131.TR2A62_0845(PF14248)ER
633131.TR2A62_1481(PF08669) (PF16350) (PF01571)
633131.TR2A62_2924(PF09585)(mitochondrial)
633131.TR2A62_0878(PF00665)(ER)
633131.TR2A62_2632(PF08570)ER
633131.TR2A62_1536(PF00665)(mitochondrial)
633131.TR2A62_0839(PF08669) (PF01571)(mitochondrial)
633131.TR2A62_0344(PF08669) (PF01571)
633131.TR2A62_3599(PF13276) (PF00665)
633131.TR2A62_2527(PF02485)(plastid)
633131.TR2A62_1775(PF02690)(ER)
633131.TR2A62_3484(PF08669) (PF01571)
633131.TR2A62_2239(PF13276) (PF00665)
633131.TR2A62_1519(PF08669) (PF01571)
633131.TR2A62_0892(PF13276) (PF00665)
633131.TR2A62_1543(PF13276) (PF00665)
633131.TR2A62_2487(PF08669) (PF01571)
633131.TR2A62_3516(PF08669) (PF01571)
633131.TR2A62_0422(PF13276) (PF00665)
633131.TR2A62_3509(PF08669) (PF01571)
633131.TR2A62_0531(PF03567)plastid
633131.TR2A62_0272(PF08669) (PF01571)
633131.TR2A62_2631(PF08570)(mitochondrial); not used
633131.TR2A62_0260(PF13276) (PF00665)
633131.TR2A62_3477(PF08669) (PF01571)
633131.TR2A62_3664(PF08669) (PF01571)
633131.TR2A62_1823(PF13276) (PF00665)
633131.TR2A62_1759(PF08669) (PF01571)
633131.TR2A62_3600(PF01527)
633131.TR2A62_3601(PF00665)
633131.TR2A62_3609(PF14330)
633131.TR2A62_1551(PF02796)
633131.TR2A62_1556(PF13683)
633131.TR2A62_0236(PF13683)not used
633131.TR2A62_0234(PF01527)
633131.TR2A62_0235(PF13276)
633131.TR2A62_1748(PF09994)
633131.TR2A62_2525(PF03567)
633131.TR2A62_0229(PF02796)
633131.TR2A62_0107(PF00665)
633131.TR2A62_0103(PF00665)
633131.TR2A62_0216(PF00665)
633131.TR2A62_0217(PF01527)
633131.TR2A62_3312(PF09458)
633131.TR2A62_0366(PF09994)
633131.TR2A62_0367(PF09994)
633131.TR2A62_1578(PF02796)not used
633131.TR2A62_2230(PF01527)
633131.TR2A62_2232(PF01527)
633131.TR2A62_2235(PF00665)
633131.TR2A62_2238(PF01527)
633131.TR2A62_1568(PF02796)
633131.TR2A62_3546(PF03567)
633131.TR2A62_3378(PF01527)
633131.TR2A62_3203(PF02690)
633131.TR2A62_1558(PF01527)
633131.TR2A62_2228(PF00665)
633131.TR2A62_2763(PF03209)
633131.TR2A62_0541(PF01527)
633131.TR2A62_0542(PF00665)
633131.TR2A62_0891(PF01527)
633131.TR2A62_1544(PF01527)
633131.TR2A62_1058(PF00665)
633131.TR2A62_3512(PF11927)
633131.TR2A62_3695PF13812
633131.TR2A62_0420(PF01527)
633131.TR2A62_1069PF07460
633131.TR2A62_3435(PF03567)
633131.TR2A62_1565(PF02796)
633131.TR2A62_1217(PF10013)not used
633131.TR2A62_3538(PF00665)
633131.TR2A62_2923(PF09585)
633131.TR2A62_3645(PF07700)
633131.TR2A62_1809(PF01527)
633131.TR2A62_0263(PF01527)
633131.TR2A62_0265(PF13683)not used
633131.TR2A62_0264(PF13276)
633131.TR2A62_1735(PF01527)
633131.TR2A62_1736(PF00665)
633131.TR2A62_1733(PF07700)
633131.TR2A62_2253(PF13683)
633131.TR2A62_1818(PF13683)
633131.TR2A62_2406(PF01527)
633131.TR2A62_0259(PF01527)
633131.TR2A62_3284(PF00665)
633131.TR2A62_2245(PF13683)not used
633131.TR2A62_2246(PF01527)
633131.TR2A62_2248(PF00665)
633131.TR2A62_1822(PF01527)
633131.TR2A62_1537(PF02796)
633131.TR2A62_0931(PF10462)
633131.TR2A62_2096(PF02485)
633131.TR2A62_2097(PF03567)
633131.TR2A62_0067(PF13276)
633131.TR2A62_0066(PF01527)
633131.TR2A62_0068(PF13683)not used
633131.TR2A62_0394(PF11927)
633131.TR2A62_2507(PF00665)
633131.TR2A62_2505(PF01527)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================