Effective results for Prevotella sp. oral taxon 472 str. F0295 (eggnog40)

Summary

Number of putative secreted proteins: 63
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 63 proteins (4 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
619693.HMPREF6745_1902				(PF16334) (PF16335) (PF17168) (PF08760)	ER
619693.HMPREF6745_0935				(PF07971)	ER
619693.HMPREF6745_0443				(PF09471)	ER
619693.HMPREF6745_1098				(PF07971)	ER
619693.HMPREF6745_0608				(PF07971)	ER
619693.HMPREF6745_0893				(PF13905)	ER
619693.HMPREF6745_0081				(PF13905)	ER
619693.HMPREF6745_0880				(PF13306)	ER
619693.HMPREF6745_1576				(PF13905)	ER
619693.HMPREF6745_1577				(PF13905)	mitochondrial; (mitochondrial)
619693.HMPREF6745_1629				(PF09295)	ER; (ER)
619693.HMPREF6745_2228				(PF09471)	ER
619693.HMPREF6745_0185				(PF13306)	ER
619693.HMPREF6745_0778				(PF13306)	mitochondrial; ER
619693.HMPREF6745_0513				(PF13306)	ER
619693.HMPREF6745_1007				PF13859	ER
619693.HMPREF6745_0343				(PF13306)	ER
619693.HMPREF6745_2874				(PF16387)	ER
619693.HMPREF6745_2875				(PF16387)	ER
619693.HMPREF6745_2275				(PF01531)	(mitochondrial)
619693.HMPREF6745_2680				(PF16332)	ER
619693.HMPREF6745_1791				(PF03051)	(mitochondrial)
619693.HMPREF6745_1665				(PF13306)	ER
619693.HMPREF6745_1668				(PF13306)	ER
619693.HMPREF6745_0327				(PF07971)	(mitochondrial)
619693.HMPREF6745_0325				(PF07971)	ER
619693.HMPREF6745_1671				(PF13306)	ER
619693.HMPREF6745_2411				PF12812	ER
619693.HMPREF6745_2326				(PF03051)	ER
619693.HMPREF6745_1196				(PF03644)	(ER)
619693.HMPREF6745_0674				(PF16313)	mitochondrial; (mitochondrial)
619693.HMPREF6745_0107				(PF13905)	ER
619693.HMPREF6745_0856				(PF00025)	ER
619693.HMPREF6745_0923				(PF07075)	ER
619693.HMPREF6745_0929				(PF07075)	ER
619693.HMPREF6745_1228				(PF03644)	plastid
619693.HMPREF6745_0602				(PF07971)	(mitochondrial)
619693.HMPREF6745_1287				(PF03051)	(mitochondrial)
619693.HMPREF6745_2445				(PF05970) (PF02689)
619693.HMPREF6745_2443				(PF01715)	(mitochondrial)
619693.HMPREF6745_2096				(PF02971) (PF07837)
619693.HMPREF6745_1054				(PF01531)	(mitochondrial)
619693.HMPREF6745_0675				(PF16313)	(ER)
619693.HMPREF6745_2182				(PF01715)	(mitochondrial)
619693.HMPREF6745_1885				PF16269
619693.HMPREF6745_1886				PF16269
619693.HMPREF6745_2994				(PF08713)
619693.HMPREF6745_0930				(PF16401)
619693.HMPREF6745_3027				(PF13151)
619693.HMPREF6745_2149				(PF08713)
619693.HMPREF6745_1389				(PF16313)
619693.HMPREF6745_2014				(PF03630)
619693.HMPREF6745_0881				(PF13306)
619693.HMPREF6745_0163				(PF16011)
619693.HMPREF6745_1361				(PF13905)	not used
619693.HMPREF6745_1649				(PF16401)
619693.HMPREF6745_0742				(PF16314)
619693.HMPREF6745_1662				(PF13306)
619693.HMPREF6745_2322				(PF05693)
619693.HMPREF6745_1316				(PF08713)
619693.HMPREF6745_1260				(PF08713)
619693.HMPREF6745_0924				(PF07075)	not used
619693.HMPREF6745_2162				(PF05970)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================