Metamenu

Effective results for Bacteroides coprophilus DSM 18228 = JCM 13818 (eggnog40)

Summary

Number of putative secreted proteins: 154
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 48 eukaryotic-like domains, contained in 154 proteins (57 high, 97 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
547042.BACCOPRO_03309(PF02929) (PF00703) (PF02836) (PF02837) (PF16353)ER
547042.BACCOPRO_00241(PF02929) (PF00703) (PF02836) (PF02837) (PF16353)ER; (ER)
547042.BACCOPRO_03686(PF02929) (PF00703) (PF02837) (PF02836) (PF16353)ER
547042.BACCOPRO_01296(PF02929) (PF00703) (PF02836) (PF02837) (PF16353)ER; (ER)
547042.BACCOPRO_03190(PF02929) (PF00703) (PF02837) (PF02836)ER
547042.BACCOPRO_01219(PF16353) (PF00703) (PF02837) (PF02836) (PF02929)
547042.BACCOPRO_03841(PF00703) (PF02837) (PF02836)ER
547042.BACCOPRO_01531(PF13290) (PF02838) (PF00728)ER
547042.BACCOPRO_03789PF05089 PF12972 PF12971ER
547042.BACCOPRO_03791(PF00703) (PF02837) (PF02836)(mitochondrial)
547042.BACCOPRO_01871PF05089 PF12972 PF12971ER
547042.BACCOPRO_00203(PF00703) (PF02837) (PF02836)mitochondrial
547042.BACCOPRO_03350PF05089 PF12972 PF12971ER
547042.BACCOPRO_03196(PF00703) (PF02837) (PF02836)ER
547042.BACCOPRO_00088(PF00703) (PF02837) (PF02836)ER
547042.BACCOPRO_00891(PF13290) (PF02838) (PF00728)ER
547042.BACCOPRO_01951(PF13287) (PF02838) (PF00728)ER
547042.BACCOPRO_03550(PF13290) (PF02838) (PF00728)ER
547042.BACCOPRO_03139(PF00703) (PF02837)ER
547042.BACCOPRO_03692(PF01120) (PF13287)ER
547042.BACCOPRO_00800(PF02838) (PF00728)ER
547042.BACCOPRO_02223(PF01120) (PF13287)ER
547042.BACCOPRO_03678(PF00703) (PF02837)ER
547042.BACCOPRO_01256(PF09113) PF09112ER
547042.BACCOPRO_01156(PF02838) (PF00728)ER
547042.BACCOPRO_01102(PF09113) PF09112(ER)
547042.BACCOPRO_02015(PF02838) (PF00728)ER
547042.BACCOPRO_02570(PF07971) (PF14683)ER; (ER)
547042.BACCOPRO_03818(PF02838) (PF00728)ER
547042.BACCOPRO_01048(PF13290) (PF02838) (PF00728)(ER)
547042.BACCOPRO_03551(PF02838) (PF00728)ER
547042.BACCOPRO_03232(PF14684)ER
547042.BACCOPRO_02282PF13905ER
547042.BACCOPRO_02281PF17170(mitochondrial)
547042.BACCOPRO_00624(PF03571)(ER)
547042.BACCOPRO_02443PF17170ER
547042.BACCOPRO_02261(PF07971)ER
547042.BACCOPRO_02523PF13905ER
547042.BACCOPRO_01161(PF01120)(mitochondrial)
547042.BACCOPRO_01218PF17170ER
547042.BACCOPRO_00355PF13905ER
547042.BACCOPRO_03734PF03118ER
547042.BACCOPRO_02675PF13905ER
547042.BACCOPRO_02514(PF01120)ER
547042.BACCOPRO_01772PF03118ER
547042.BACCOPRO_00346(PF00344)ER
547042.BACCOPRO_02888(PF12437)mitochondrial; (mitochondrial)
547042.BACCOPRO_03696(PF09471)ER
547042.BACCOPRO_01692PF13905ER
547042.BACCOPRO_02654(PF07971)ER
547042.BACCOPRO_00793PF17170ER
547042.BACCOPRO_00791PF17170ER
547042.BACCOPRO_00794(PF14684)ER
547042.BACCOPRO_01352(PF03432)(mitochondrial)
547042.BACCOPRO_00802PF17170ER
547042.BACCOPRO_01224PF17170ER
547042.BACCOPRO_01220PF17170ER
547042.BACCOPRO_01221PF17170ER
547042.BACCOPRO_00789PF17170ER
547042.BACCOPRO_00912(PF13320)ER
547042.BACCOPRO_03254(PF00703) (PF02837) (PF02836)
547042.BACCOPRO_03251(PF11028)ER
547042.BACCOPRO_02428(PF09471)ER; (ER)
547042.BACCOPRO_02335(PF11028)ER
547042.BACCOPRO_03332(PF01120)ER
547042.BACCOPRO_02203PF13905ER
547042.BACCOPRO_00458(PF14684)ER
547042.BACCOPRO_02320(PF01120)ER
547042.BACCOPRO_02597(PF01120)ER; (ER)
547042.BACCOPRO_00995PF17170ER
547042.BACCOPRO_02172PF13905ER
547042.BACCOPRO_01851(PF02544)ER
547042.BACCOPRO_00434(PF03092)(ER)
547042.BACCOPRO_02344PF17170ER
547042.BACCOPRO_02582PF17170ER
547042.BACCOPRO_01105PF17170ER
547042.BACCOPRO_01106PF17170ER
547042.BACCOPRO_02013PF17170ER
547042.BACCOPRO_02763PF17170ER
547042.BACCOPRO_00407PF17170ER
547042.BACCOPRO_00400(PF01120)ER
547042.BACCOPRO_03377(PF02838)ER
547042.BACCOPRO_02395PF17170ER
547042.BACCOPRO_02392(PF01120)ER
547042.BACCOPRO_03769(PF03432)(mitochondrial); mitochondrial
547042.BACCOPRO_02569(PF07971)ER; (ER)
547042.BACCOPRO_02565(PF07971)ER
547042.BACCOPRO_00890(PF00703)ER
547042.BACCOPRO_00893(PF07971)ER
547042.BACCOPRO_02031(PF01030)ER
547042.BACCOPRO_03810PF13905ER
547042.BACCOPRO_02816(PF01120)ER
547042.BACCOPRO_00170(PF14684)ER
547042.BACCOPRO_02532(PF01807) PF13155
547042.BACCOPRO_03138(PF00703) (PF02837)
547042.BACCOPRO_02998(PF01807) PF13155
547042.BACCOPRO_02672(PF02838) (PF00728)not used
547042.BACCOPRO_01748(PF01807) PF13155
547042.BACCOPRO_00815(PF03432)(plastid)
547042.BACCOPRO_01063(PF01807) PF13155
547042.BACCOPRO_03370(PF01120)(mitochondrial)
547042.BACCOPRO_02979(PF01120) (PF13287)
547042.BACCOPRO_00892(PF02838) (PF00728)not used
547042.BACCOPRO_01389(PF07971)
547042.BACCOPRO_01098(PF01715)
547042.BACCOPRO_02286(PF03054)
547042.BACCOPRO_02262(PF07971)
547042.BACCOPRO_01083(PF03432)
547042.BACCOPRO_00032(PF01807)
547042.BACCOPRO_00352PF03118
547042.BACCOPRO_01775(PF03432)
547042.BACCOPRO_02242(PF01120)
547042.BACCOPRO_00132PF01624
547042.BACCOPRO_00009(PF07693)not used
547042.BACCOPRO_00345(PF00344)
547042.BACCOPRO_03050PF13155
547042.BACCOPRO_03059PF01624
547042.BACCOPRO_03693(PF03054)
547042.BACCOPRO_01850(PF00889)not used
547042.BACCOPRO_01458PF01624
547042.BACCOPRO_00010(PF07693)
547042.BACCOPRO_00011(PF16565)
547042.BACCOPRO_01755PF03118
547042.BACCOPRO_00062(PF16011)
547042.BACCOPRO_03461(PF07693)
547042.BACCOPRO_03328(PF02689)
547042.BACCOPRO_02234(PF05686)
547042.BACCOPRO_00267(PF03054)
547042.BACCOPRO_00693PF07959
547042.BACCOPRO_02323(PF01120)
547042.BACCOPRO_01478PF13155
547042.BACCOPRO_03430PF01624
547042.BACCOPRO_03438PF13155
547042.BACCOPRO_03506(PF03571)not used
547042.BACCOPRO_01860(PF00889)
547042.BACCOPRO_00992(PF13320)
547042.BACCOPRO_01468PF13155
547042.BACCOPRO_03631(PF03432)
547042.BACCOPRO_00436PF16269
547042.BACCOPRO_01291(PF12437)
547042.BACCOPRO_02165PF01624
547042.BACCOPRO_03628PF13155
547042.BACCOPRO_00403(PF09295)
547042.BACCOPRO_03756PF13155
547042.BACCOPRO_00713(PF08357)
547042.BACCOPRO_01112(PF05693)
547042.BACCOPRO_02157PF01624
547042.BACCOPRO_02566(PF07971)not used
547042.BACCOPRO_01058(PF12437)not used
547042.BACCOPRO_03147(PF01715)
547042.BACCOPRO_01120(PF01991)
547042.BACCOPRO_03811PF13905
547042.BACCOPRO_03808PF17170not used
547042.BACCOPRO_03809PF17170not used

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================