Metamenu

Effective results for Bacteroides plebeius DSM 17135 (eggnog40)

Summary

Number of putative secreted proteins: 218
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 63 eukaryotic-like domains, contained in 218 proteins (50 high, 168 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
484018.BACPLE_02224(PF02929) (PF02837) (PF02836) (PF00703) (PF16353)ER
484018.BACPLE_03710(PF02929) (PF02837) (PF02836) (PF16353) (PF00703)ER
484018.BACPLE_00160(PF02929) (PF02837) (PF02836) (PF16353) (PF00703)ER; plastid
484018.BACPLE_00177(PF02837) (PF02836) (PF16355) (PF00703)ER
484018.BACPLE_01672(PF02837) (PF02836) (PF16355) (PF00703)(ER)
484018.BACPLE_01673(PF02837) (PF02836) (PF16355) (PF00703)ER
484018.BACPLE_03593(PF02929) (PF02837) (PF02836) (PF00703)(mitochondrial)
484018.BACPLE_00247(PF02837) (PF02836) (PF16355) (PF00703)ER
484018.BACPLE_00248(PF02837) (PF02836) (PF16355) (PF00703)ER
484018.BACPLE_03674(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_00997(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_00503(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_01015(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_01358(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_03696(PF02837) (PF02836) (PF00703)(ER); ER
484018.BACPLE_00640(PF02929) (PF02837) (PF02836) (PF00703) (PF16353)
484018.BACPLE_02292(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_02381(PF02838) (PF00728) (PF13287)ER
484018.BACPLE_01374(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_03159(PF02837) (PF02836) (PF00703)ER
484018.BACPLE_01706(PF02929) (PF02837) (PF02836) (PF00703) (PF16353)
484018.BACPLE_00162(PF02838) (PF00728) (PF13287)(ER); ER
484018.BACPLE_01119(PF02278) (PF08124)ER
484018.BACPLE_03672(PF02837) (PF17132)ER
484018.BACPLE_01865(PF09112) (PF09113)ER
484018.BACPLE_00337(PF07470) PF10022ER
484018.BACPLE_01684(PF07470) PF10022(ER); ER
484018.BACPLE_02759(PF02838) (PF00728)ER
484018.BACPLE_02962(PF02838) (PF00728)ER
484018.BACPLE_00243(PF02838) (PF00728)ER
484018.BACPLE_00588(PF02838) (PF00728)ER
484018.BACPLE_01979(PF02837) (PF03629)ER
484018.BACPLE_01369(PF02837) (PF02836)ER
484018.BACPLE_01702(PF16757) (PF01120)ER
484018.BACPLE_00178(PF14587)ER
484018.BACPLE_01336(PF01823)ER
484018.BACPLE_03669(PF17132)ER
484018.BACPLE_02449PF09471ER
484018.BACPLE_00416PF13905ER
484018.BACPLE_00987(PF16499)ER
484018.BACPLE_00985(PF02837) (PF02836) (PF00703)
484018.BACPLE_00989(PF04616)ER
484018.BACPLE_01036(PF03571)(ER)
484018.BACPLE_02459(PF01120)ER
484018.BACPLE_03670PF10022ER
484018.BACPLE_03673(PF17132)ER
484018.BACPLE_03678(PF02837) (PF02836) (PF00703)
484018.BACPLE_00408(PF07632)ER
484018.BACPLE_00400(PF04616)ER
484018.BACPLE_00991PF05691ER
484018.BACPLE_00992PF03718ER
484018.BACPLE_00993(PF04616)ER; (ER)
484018.BACPLE_00752PF13905ER
484018.BACPLE_01008PF03718ER
484018.BACPLE_01002(PF04616)ER
484018.BACPLE_02442PF09471ER
484018.BACPLE_02474(PF16499)ER
484018.BACPLE_02275(PF07470)ER
484018.BACPLE_02274PF10022ER
484018.BACPLE_02893(PF05140)ER
484018.BACPLE_00202PF09471ER
484018.BACPLE_00336(PF04616)ER
484018.BACPLE_03689PF10022ER
484018.BACPLE_03350(PF03051)ER
484018.BACPLE_01671(PF04616)ER
484018.BACPLE_03695(PF07470)ER
484018.BACPLE_00530(PF16499)ER
484018.BACPLE_00646(PF04616)ER
484018.BACPLE_00647(PF04616)ER
484018.BACPLE_00796(PF13431)ER
484018.BACPLE_01442(PF05140)(ER)
484018.BACPLE_01539(PF00930)ER
484018.BACPLE_03112(PF00930)ER
484018.BACPLE_03759(PF00295)ER
484018.BACPLE_03598(PF13431)ER
484018.BACPLE_03597PF13905ER
484018.BACPLE_00814PF13905ER
484018.BACPLE_00256(PF07470)ER
484018.BACPLE_03801(PF02278)ER
484018.BACPLE_01450(PF00295)ER
484018.BACPLE_03586(PF07470)ER
484018.BACPLE_00486(PF07971)ER
484018.BACPLE_00244(PF00703)ER
484018.BACPLE_01088(PF01120)ER
484018.BACPLE_02280(PF01120)ER
484018.BACPLE_02998PF09471ER
484018.BACPLE_03172(PF14684)ER
484018.BACPLE_00585(PF03629)ER
484018.BACPLE_00276(PF14684)ER
484018.BACPLE_00726(PF03051)ER
484018.BACPLE_03825(PF00930)ER
484018.BACPLE_01094PF13905ER
484018.BACPLE_03760(PF07971)ER; (ER)
484018.BACPLE_03768(PF03629)ER
484018.BACPLE_02380(PF07971)ER
484018.BACPLE_02011(PF12437)(mitochondrial)
484018.BACPLE_03388PF13905ER
484018.BACPLE_01375(PF03629)ER
484018.BACPLE_01975(PF04616)mitochondrial
484018.BACPLE_01974(PF04616)ER; (ER)
484018.BACPLE_01977(PF03629)ER
484018.BACPLE_01971(PF04616)ER
484018.BACPLE_02378(PF07971)ER
484018.BACPLE_02379(PF04450)ER
484018.BACPLE_02374(PF04450)ER
484018.BACPLE_00637(PF07971)ER
484018.BACPLE_00636(PF07971)ER
484018.BACPLE_00638(PF07971)ER
484018.BACPLE_01410PF13905ER
484018.BACPLE_01360(PF14587)ER
484018.BACPLE_01366(PF14587)(ER)
484018.BACPLE_02143(PF03092)(mitochondrial)
484018.BACPLE_01968(PF04616)ER
484018.BACPLE_01966(PF15979)ER
484018.BACPLE_01967(PF07632)ER
484018.BACPLE_03451(PF07470)ER
484018.BACPLE_00712(PF07470)ER
484018.BACPLE_01915(PF04488)(mitochondrial)
484018.BACPLE_03732(PF04616)ER
484018.BACPLE_02809(PF04616)ER
484018.BACPLE_02804(PF14684)ER
484018.BACPLE_02805(PF07470)ER
484018.BACPLE_02937(PF12437)mitochondrial; (mitochondrial)
484018.BACPLE_00542(PF00930)ER
484018.BACPLE_00540(PF04616)(ER)
484018.BACPLE_01588(PF01120)ER; (ER)
484018.BACPLE_01583(PF13402)ER
484018.BACPLE_02055(PF07971)ER
484018.BACPLE_03053(PF05140)ER
484018.BACPLE_03983PF13155(ER)
484018.BACPLE_00398(PF02057)ER
484018.BACPLE_00399(PF15979)ER
484018.BACPLE_02278(PF13402)(ER)
484018.BACPLE_00335(PF04616)(ER)
484018.BACPLE_02470(PF02278) (PF08124)
484018.BACPLE_03966(PF13151)(mitochondrial)
484018.BACPLE_00056(PF04488)(mitochondrial)
484018.BACPLE_01546(PF16757) (PF01120)
484018.BACPLE_03146(PF01715)(ER)
484018.BACPLE_03860(PF02544)(ER)
484018.BACPLE_00161(PF02838) (PF00728)
484018.BACPLE_01020(PF16499)
484018.BACPLE_01800(PF13683)
484018.BACPLE_02827(PF03051)
484018.BACPLE_01643PF13155
484018.BACPLE_01318(PF13151)
484018.BACPLE_03882PF13155
484018.BACPLE_00984PF03718
484018.BACPLE_01324PF13155
484018.BACPLE_03677(PF17132)
484018.BACPLE_03671(PF07470)
484018.BACPLE_01487PF03432
484018.BACPLE_01266PF01348
484018.BACPLE_01863(PF01120)
484018.BACPLE_01982(PF04616)
484018.BACPLE_01490PF13155
484018.BACPLE_01010(PF04616)
484018.BACPLE_01014(PF04616)
484018.BACPLE_01783(PF03054)
484018.BACPLE_01278PF03432
484018.BACPLE_03430(PF13683)
484018.BACPLE_03927PF03432
484018.BACPLE_01662PF03432
484018.BACPLE_01680(PF05336)
484018.BACPLE_01514PF03432
484018.BACPLE_02797(PF01715)
484018.BACPLE_03131(PF05336)
484018.BACPLE_03134(PF00295)
484018.BACPLE_02886(PF13683)
484018.BACPLE_02328(PF16314)
484018.BACPLE_01505(PF04488)
484018.BACPLE_02327PF13905
484018.BACPLE_02523PF13155
484018.BACPLE_03694(PF01120)
484018.BACPLE_03345(PF16011)
484018.BACPLE_02047PF01348
484018.BACPLE_01228PF01348
484018.BACPLE_02757(PF02838)
484018.BACPLE_03595(PF17132)
484018.BACPLE_03571PF13155
484018.BACPLE_02479(PF02689)
484018.BACPLE_01189(PF05336)
484018.BACPLE_01187PF07959
484018.BACPLE_01182(PF12222)
484018.BACPLE_04008PF03432
484018.BACPLE_01529(PF01120)
484018.BACPLE_01230PF03432
484018.BACPLE_02764PF01348
484018.BACPLE_03588(PF00295)
484018.BACPLE_02440(PF03571)
484018.BACPLE_03810(PF10435)
484018.BACPLE_01885(PF03630)
484018.BACPLE_01958(PF13683)
484018.BACPLE_02776PF03432
484018.BACPLE_03552PF03432
484018.BACPLE_00876PF03432
484018.BACPLE_00583(PF00930)
484018.BACPLE_01544(PF05336)
484018.BACPLE_02569PF13155
484018.BACPLE_03384PF13905
484018.BACPLE_01370(PF04616)
484018.BACPLE_02570PF13155
484018.BACPLE_03531PF01348
484018.BACPLE_03445(PF00295)
484018.BACPLE_02145PF16269
484018.BACPLE_01566(PF05704)
484018.BACPLE_01563(PF05686)
484018.BACPLE_03751(PF13683)
484018.BACPLE_00719(PF13683)
484018.BACPLE_00627(PF03054)
484018.BACPLE_00629(PF15979)
484018.BACPLE_00158(PF03054)
484018.BACPLE_00151(PF13683)
484018.BACPLE_01353(PF05693)
484018.BACPLE_02806(PF04616)
484018.BACPLE_00369(PF13683)
484018.BACPLE_03292PF03432
484018.BACPLE_00551PF03432

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================