Metamenu

Effective results for Parabacteroides merdae ATCC 43184 (eggnog40)

Summary

Number of putative secreted proteins: 205
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 64 eukaryotic-like domains, contained in 205 proteins (34 high, 171 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
411477.PARMER_00928(PF00703) (PF02836) (PF02929) (PF16353) (PF02837) (PF00754)ER
411477.PARMER_03535(PF00703) (PF16353) (PF02836) (PF02929) (PF02837)ER
411477.PARMER_04058(PF00703) (PF02929) (PF02836) (PF16353) (PF02837)(mitochondrial); (ER)
411477.PARMER_01487(PF00703) (PF16355) (PF02836) (PF02837)ER
411477.PARMER_02560PF16334 PF08760 PF16335 PF17168ER
411477.PARMER_00231(PF00703) (PF16355) (PF02836) (PF02837)ER
411477.PARMER_03243(PF00728) (PF02838) PF13287 (PF00754)(ER)
411477.PARMER_04124PF16334 PF17168 PF16335 PF08760ER
411477.PARMER_00904(PF00703) (PF16355) (PF02836) (PF02837)ER
411477.PARMER_02407(PF00703) (PF16355) (PF02836) (PF02837)ER
411477.PARMER_01823(PF00728) (PF13290) (PF02838)(ER)
411477.PARMER_00282(PF00703) (PF02836) (PF02837)ER
411477.PARMER_00478(PF00728) (PF13290) (PF02838)(mitochondrial)
411477.PARMER_00206(PF00703) (PF02836) (PF02837)ER
411477.PARMER_04123(PF00703) (PF02836) (PF02837)ER
411477.PARMER_04051(PF00703) (PF02836) (PF16355) (PF02837) (PF00754)
411477.PARMER_00215(PF12972) (PF12971) (PF05089)ER
411477.PARMER_03291(PF00728) (PF02838) PF13287ER
411477.PARMER_01741(PF12972) (PF12971) (PF05089)ER
411477.PARMER_01561(PF00703) (PF02836) (PF02837)ER
411477.PARMER_02149(PF00703) (PF16353) (PF02836) (PF02929) (PF02837)
411477.PARMER_00289PF13287 (PF00754)ER
411477.PARMER_03215(PF08124) (PF02884)ER
411477.PARMER_00271(PF00728) (PF02838)ER
411477.PARMER_03209(PF00728) (PF02838)ER
411477.PARMER_02827(PF00703) (PF02837) (PF00754)(ER)
411477.PARMER_01306(PF09112) (PF09113)ER
411477.PARMER_02793(PF00728) (PF02838)ER
411477.PARMER_00129PF13287 (PF00754)ER
411477.PARMER_00327(PF00728) (PF02838)ER
411477.PARMER_00369(PF08124) (PF02884)ER
411477.PARMER_02772(PF14684)ER
411477.PARMER_00605(PF07971)ER
411477.PARMER_00600(PF17132)(mitochondrial)
411477.PARMER_03383(PF12831)(mitochondrial)
411477.PARMER_03382(PF02837)ER
411477.PARMER_01942PF01807 (PF13155) (PF08275)
411477.PARMER_03960(PF05592)ER
411477.PARMER_01498(PF00703) (PF02836) (PF02837)
411477.PARMER_00054(PF03432)(mitochondrial)
411477.PARMER_03390(PF07971)ER
411477.PARMER_02154(PF12437)mitochondrial; (mitochondrial)
411477.PARMER_03085(PF13290)ER
411477.PARMER_01006(PF05592)ER
411477.PARMER_00534(PF02080)ER
411477.PARMER_01139(PF07971)(ER)
411477.PARMER_01134(PF03051)ER
411477.PARMER_00666(PF02350)(mitochondrial)
411477.PARMER_03214(PF07940)ER
411477.PARMER_03181PF17170ER
411477.PARMER_03184PF17170ER
411477.PARMER_02364(PF03577)ER
411477.PARMER_03213(PF07470)ER
411477.PARMER_03216(PF07940)ER
411477.PARMER_00290(PF00754)ER
411477.PARMER_00272(PF03577)ER
411477.PARMER_03777(PF00930)ER
411477.PARMER_03190PF17170ER
411477.PARMER_03197(PF00754)ER
411477.PARMER_02357(PF02838)ER
411477.PARMER_02740(PF05592)ER
411477.PARMER_00080(PF17132)ER
411477.PARMER_00592(PF03577)ER
411477.PARMER_01909(PF05592)ER
411477.PARMER_01908(PF05592)ER
411477.PARMER_01907(PF05592)ER
411477.PARMER_01698PF12895ER
411477.PARMER_01053(PF02350)(mitochondrial)
411477.PARMER_01477(PF07940)ER
411477.PARMER_01476(PF07470)ER
411477.PARMER_00477(PF07971)ER
411477.PARMER_03688(PF07470)ER
411477.PARMER_02797(PF12831)(mitochondrial)
411477.PARMER_02796(PF12831)ER
411477.PARMER_01048(PF07971)ER
411477.PARMER_02798(PF12831)ER
411477.PARMER_03030PF17170ER
411477.PARMER_02327(PF07168)ER
411477.PARMER_04427(PF02080)ER
411477.PARMER_01669PF17170ER
411477.PARMER_04122(PF00703) (PF02836) (PF02837)
411477.PARMER_03016(PF00703) (PF02836) (PF02837)
411477.PARMER_03276(PF00754)ER; (ER)
411477.PARMER_03879PF01807 (PF13155) (PF08275)
411477.PARMER_00109PF17170ER
411477.PARMER_00101PF17170ER
411477.PARMER_02747(PF00930)ER
411477.PARMER_02202(PF00754)(mitochondrial); (ER)
411477.PARMER_02209(PF02838)ER
411477.PARMER_01649PF17170mitochondrial
411477.PARMER_03860(PF07971)ER
411477.PARMER_03861(PF07971)ER
411477.PARMER_03862(PF07971)ER
411477.PARMER_01358PF17170ER
411477.PARMER_04210PF16269ER
411477.PARMER_02507(PF07971)ER
411477.PARMER_02184(PF16117)ER
411477.PARMER_03920(PF02080)ER
411477.PARMER_00581PF01807 (PF13155) (PF08275)
411477.PARMER_01562(PF00728) (PF02838)(ER)
411477.PARMER_04000(PF02080)ER
411477.PARMER_03449(PF07940)(mitochondrial)
411477.PARMER_02220(PF00930)ER
411477.PARMER_02151(PF05592)ER
411477.PARMER_02406(PF07470)ER
411477.PARMER_01576(PF07971)ER; (ER)
411477.PARMER_01283(PF00930)ER
411477.PARMER_01285(PF03051)ER
411477.PARMER_00972(PF04664)(ER); ER
411477.PARMER_01374PF12895ER
411477.PARMER_00489PF17170ER
411477.PARMER_04016(PF02544)ER
411477.PARMER_03614PF17170ER
411477.PARMER_03129(PF14684)ER
411477.PARMER_03122(PF07971)ER
411477.PARMER_02236(PF07971)ER
411477.PARMER_02235(PF07971)ER
411477.PARMER_02417(PF02080)ER
411477.PARMER_03941(PF02350)(mitochondrial)
411477.PARMER_00704(PF12831)ER
411477.PARMER_00703(PF12831)ER
411477.PARMER_00032PF17170ER
411477.PARMER_00037(PF07940)ER
411477.PARMER_03138(PF14684)ER
411477.PARMER_00739(PF01715)(plastid)
411477.PARMER_01155(PF00302)(ER)
411477.PARMER_03381(PF00703) (PF02836)
411477.PARMER_00056PF01807 (PF13155)
411477.PARMER_03970(PF01715)(plastid)
411477.PARMER_03194PF17170(ER)
411477.PARMER_00455(PF00216)(plastid)
411477.PARMER_02339PF12895(mitochondrial)
411477.PARMER_03325(PF00216)(mitochondrial)
411477.PARMER_03655(PF17132)(ER)
411477.PARMER_03277(PF16011)(ER)
411477.PARMER_00702(PF12831)(ER)
411477.PARMER_01514(PF07837) (PF02971)
411477.PARMER_01169PF01807 (PF13155)
411477.PARMER_03447(PF02350)(mitochondrial)
411477.PARMER_03065PF13287 (PF00754)
411477.PARMER_00814PF01807 (PF13155)
411477.PARMER_00707(PF07470)(ER)
411477.PARMER_04250(PF13151)not used
411477.PARMER_02838(PF04488)
411477.PARMER_03097(PF02080)
411477.PARMER_02764(PF07470)
411477.PARMER_01232(PF03432)
411477.PARMER_00445(PF02080)
411477.PARMER_02621(PF02357)
411477.PARMER_02629(PF02350)
411477.PARMER_01221(PF02350)
411477.PARMER_01226(PF03457)
411477.PARMER_02960(PF00958)
411477.PARMER_01852(PF00302)
411477.PARMER_00851(PF00216)
411477.PARMER_00180(PF07470)
411477.PARMER_01212(PF02350)
411477.PARMER_01219(PF07470)
411477.PARMER_00273(PF03051)
411477.PARMER_00275(PF02929)
411477.PARMER_03378(PF16314)
411477.PARMER_03199PF12895
411477.PARMER_02741(PF05592)
411477.PARMER_04181(PF00216)
411477.PARMER_01900(PF00216)
411477.PARMER_02652(PF03457)
411477.PARMER_01683(PF00302)
411477.PARMER_00795(PF03432)
411477.PARMER_03039(PF02080)
411477.PARMER_01899(PF00216)
411477.PARMER_01522(PF00216)
411477.PARMER_04221(PF05970)
411477.PARMER_02311PF17170
411477.PARMER_01535(PF00754)
411477.PARMER_01337(PF02357)
411477.PARMER_03011(PF07470)
411477.PARMER_03303(PF00216)
411477.PARMER_03656(PF05592)
411477.PARMER_03475(PF03432)
411477.PARMER_02453(PF13155)
411477.PARMER_02997PF12895
411477.PARMER_03469(PF02357)
411477.PARMER_03005(PF02080)
411477.PARMER_01642(PF00930)
411477.PARMER_03863(PF04450)
411477.PARMER_00770(PF05693)
411477.PARMER_01359(PF00754)
411477.PARMER_01357(PF12437)
411477.PARMER_02854(PF00216)
411477.PARMER_02219(PF00216)
411477.PARMER_03922(PF05970)
411477.PARMER_04463(PF03432)
411477.PARMER_03444(PF03457)
411477.PARMER_01199(PF02357)
411477.PARMER_01281(PF05592)
411477.PARMER_00155(PF02080)
411477.PARMER_00392(PF00216)
411477.PARMER_02233(PF02357)
411477.PARMER_01963(PF04488)
411477.PARMER_03944PF07959
411477.PARMER_00563(PF02350)
411477.PARMER_00498(PF04488)
411477.PARMER_02959(PF00958)
411477.PARMER_02171(PF00165)not used
411477.PARMER_01778(PF03630)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================