Metamenu

Effective results for Vibrionales bacterium SWAT-3 (eggnog40)

Summary

Number of putative secreted proteins: 335
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 37 eukaryotic-like domains, contained in 335 proteins (228 high, 107 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
391574.VSWAT3_18928PF00665mitochondrial
391574.VSWAT3_07666(PF13401)ER
391574.VSWAT3_02811(PF03222)ER; (ER)
391574.VSWAT3_02071(PF00075)(mitochondrial)
391574.VSWAT3_06311PF16683ER
391574.VSWAT3_17538PF00665(mitochondrial)
391574.VSWAT3_12717(PF00031)ER
391574.VSWAT3_11967(PF01554)mitochondrial
391574.VSWAT3_23629(PF01554)ER; (ER)
391574.VSWAT3_04431(PF01554)(ER)
391574.VSWAT3_17358(PF03222)ER; (ER)
391574.VSWAT3_18953(PF01554)ER
391574.VSWAT3_03311(PF00119)ER
391574.VSWAT3_06966PF02371ER; (ER)
391574.VSWAT3_05611(PF03222)ER
391574.VSWAT3_21390PF00665(mitochondrial); mitochondrial
391574.VSWAT3_05386(PF17186)mitochondrial
391574.VSWAT3_19651(PF01554)ER; (ER)
391574.VSWAT3_23029PF00665mitochondrial; (mitochondrial)
391574.VSWAT3_23979PF01117ER
391574.VSWAT3_21195PF00665(mitochondrial)
391574.VSWAT3_17678(PF01554)ER
391574.VSWAT3_05366(PF01554)mitochondrial; (mitochondrial)
391574.VSWAT3_04761(PF01554)(mitochondrial)
391574.VSWAT3_11554PF13518 PF00665(mitochondrial)
391574.VSWAT3_12802(PF17186)ER
391574.VSWAT3_16700PF13518(mitochondrial)
391574.VSWAT3_25874(PF03050)(plastid)
391574.VSWAT3_00793PF13518(mitochondrial)
391574.VSWAT3_07536(PF01554)(ER)
391574.VSWAT3_25914(PF03050)(plastid)
391574.VSWAT3_26596PF13518(mitochondrial)
391574.VSWAT3_23534PF13518(mitochondrial)
391574.VSWAT3_13662(PF03199) (PF03917)
391574.VSWAT3_16830(PF13551) (PF13592)
391574.VSWAT3_00938(PF00119)plastid
391574.VSWAT3_06791(PF10013)mitochondrial; not used
391574.VSWAT3_07316PF13518(mitochondrial)
391574.VSWAT3_06371PF01117(ER)
391574.VSWAT3_10198(PF13551) (PF13592)
391574.VSWAT3_19911(PF01554)(ER)
391574.VSWAT3_16695PF00665(mitochondrial)
391574.VSWAT3_18413PF13518(mitochondrial)
391574.VSWAT3_17083PF13518(mitochondrial)
391574.VSWAT3_26821PF13518(mitochondrial)
391574.VSWAT3_15619PF13518(mitochondrial)
391574.VSWAT3_26721(PF06042)(plastid)
391574.VSWAT3_25624(PF01554)(plastid)
391574.VSWAT3_02141PF13518(mitochondrial)
391574.VSWAT3_21380PF13518(mitochondrial)
391574.VSWAT3_24599PF13518(mitochondrial)
391574.VSWAT3_05266PF13518(mitochondrial)
391574.VSWAT3_09183PF13518(mitochondrial)
391574.VSWAT3_03951(PF13551) (PF13592)
391574.VSWAT3_23649(PF13551) (PF13592)
391574.VSWAT3_22175(PF03050)(plastid)
391574.VSWAT3_21655(PF13551) (PF13592)
391574.VSWAT3_05396PF13518(mitochondrial)
391574.VSWAT3_15219PF13518(mitochondrial)
391574.VSWAT3_23454PF13518(mitochondrial)
391574.VSWAT3_00285PF13518(mitochondrial)
391574.VSWAT3_25834(PF03050)(plastid)
391574.VSWAT3_15778PF13518(mitochondrial)
391574.VSWAT3_11186PF13518(mitochondrial)
391574.VSWAT3_22577PF13518(mitochondrial)
391574.VSWAT3_08701(PF13551) (PF13592)
391574.VSWAT3_02006PF13518(mitochondrial)
391574.VSWAT3_10726(PF04765)(mitochondrial)
391574.VSWAT3_16865(PF01554)(mitochondrial)
391574.VSWAT3_25809(PF03050)(plastid)
391574.VSWAT3_03756PF13518(mitochondrial)
391574.VSWAT3_02486PF13518(mitochondrial)
391574.VSWAT3_02461(PF07478)
391574.VSWAT3_11962(PF00872)
391574.VSWAT3_10701PF01609
391574.VSWAT3_00798PF00665
391574.VSWAT3_09133PF01609
391574.VSWAT3_00220PF01610
391574.VSWAT3_10966(PF01786)
391574.VSWAT3_05416PF01609
391574.VSWAT3_18143PF01609
391574.VSWAT3_12832PF01609
391574.VSWAT3_03321PF01609
391574.VSWAT3_02921PF02371
391574.VSWAT3_02321PF01610
391574.VSWAT3_25649PF01609
391574.VSWAT3_02491PF00665
391574.VSWAT3_19098PF02371
391574.VSWAT3_06006PF01609
391574.VSWAT3_25264PF01610
391574.VSWAT3_03816PF02371
391574.VSWAT3_24514PF01610
391574.VSWAT3_01895PF04927not used
391574.VSWAT3_25869(PF03050)
391574.VSWAT3_17753PF02371
391574.VSWAT3_26776PF00665
391574.VSWAT3_15659PF02371
391574.VSWAT3_05401PF00665
391574.VSWAT3_04556PF01609
391574.VSWAT3_22320PF01609
391574.VSWAT3_26009PF01610
391574.VSWAT3_19391(PF01554)
391574.VSWAT3_02311PF01610
391574.VSWAT3_25674(PF00872)
391574.VSWAT3_07541(PF00677)
391574.VSWAT3_02681PF01610
391574.VSWAT3_02686PF01610
391574.VSWAT3_20680PF01609
391574.VSWAT3_17528PF02371
391574.VSWAT3_24184PF01609
391574.VSWAT3_03301(PF00119)
391574.VSWAT3_18948PF01609
391574.VSWAT3_27168PF01610not used
391574.VSWAT3_23449PF00665
391574.VSWAT3_03306PF01609
391574.VSWAT3_12102PF01609
391574.VSWAT3_23844(PF04664)
391574.VSWAT3_11747(PF13508)
391574.VSWAT3_25749(PF03050)
391574.VSWAT3_06576PF01609
391574.VSWAT3_06151PF00665
391574.VSWAT3_24539PF01609
391574.VSWAT3_16355(PF00872)
391574.VSWAT3_20500(PF00872)
391574.VSWAT3_17513PF01610
391574.VSWAT3_18958(PF01554)
391574.VSWAT3_10173PF01609
391574.VSWAT3_11356PF01610
391574.VSWAT3_18778PF01609
391574.VSWAT3_11001(PF00872)
391574.VSWAT3_23279PF00154
391574.VSWAT3_23874PF01609
391574.VSWAT3_07146(PF00677)
391574.VSWAT3_07031PF01610
391574.VSWAT3_07361PF02371
391574.VSWAT3_25544(PF00872)
391574.VSWAT3_02191PF01610
391574.VSWAT3_26811PF02371
391574.VSWAT3_17763PF01609
391574.VSWAT3_05186PF02371
391574.VSWAT3_05631PF01610
391574.VSWAT3_02691PF01610
391574.VSWAT3_09643(PF07478)
391574.VSWAT3_13507PF01610
391574.VSWAT3_04076PF01609
391574.VSWAT3_18188PF01609
391574.VSWAT3_19163PF01609
391574.VSWAT3_02981PF02371
391574.VSWAT3_07026PF01610
391574.VSWAT3_03586PF01609
391574.VSWAT3_07371PF02371
391574.VSWAT3_25734PF01610
391574.VSWAT3_16028(PF00872)
391574.VSWAT3_02181PF01610
391574.VSWAT3_21920PF01609
391574.VSWAT3_06991PF02371
391574.VSWAT3_06996PF00665
391574.VSWAT3_24394(PF07478)
391574.VSWAT3_06356(PF00872)
391574.VSWAT3_16975PF01609
391574.VSWAT3_02721PF01610
391574.VSWAT3_26826PF00665
391574.VSWAT3_18408PF00665
391574.VSWAT3_05626(PF03222)
391574.VSWAT3_10536(PF01554)
391574.VSWAT3_11802(PF01554)
391574.VSWAT3_24604PF00665
391574.VSWAT3_26601PF00665
391574.VSWAT3_15614PF00665
391574.VSWAT3_11663PF01610
391574.VSWAT3_07161(PF13508)
391574.VSWAT3_07011PF02371
391574.VSWAT3_08281PF01610
391574.VSWAT3_12262(PF00872)
391574.VSWAT3_07746PF01609
391574.VSWAT3_01996PF01610
391574.VSWAT3_21930(PF00872)
391574.VSWAT3_21735PF01610
391574.VSWAT3_03931(PF13508)
391574.VSWAT3_25969PF01610
391574.VSWAT3_17568PF01609
391574.VSWAT3_04276(PF13401)
391574.VSWAT3_08201PF01610not used
391574.VSWAT3_14532(PF00075)
391574.VSWAT3_03616PF01609
391574.VSWAT3_26059PF01610
391574.VSWAT3_08571(PF00872)
391574.VSWAT3_03546PF01610
391574.VSWAT3_12092PF01609
391574.VSWAT3_25714PF01609
391574.VSWAT3_07356PF05219
391574.VSWAT3_19323(PF13508)
391574.VSWAT3_02146PF00665
391574.VSWAT3_06406PF01609
391574.VSWAT3_06401(PF08732)
391574.VSWAT3_20725PF00154
391574.VSWAT3_20720PF00154
391574.VSWAT3_21385PF01610
391574.VSWAT3_17318(PF13508)
391574.VSWAT3_17958PF01609
391574.VSWAT3_07906PF00665
391574.VSWAT3_15833(PF00872)
391574.VSWAT3_05261PF00665
391574.VSWAT3_05606(PF00872)
391574.VSWAT3_27224(PF02631)
391574.VSWAT3_00035(PF01554)
391574.VSWAT3_14547PF01609
391574.VSWAT3_15544PF00665
391574.VSWAT3_15494PF01609
391574.VSWAT3_22742PF02371
391574.VSWAT3_12082PF01610
391574.VSWAT3_16895PF01609
391574.VSWAT3_17438PF01609
391574.VSWAT3_10656(PF00872)
391574.VSWAT3_05816(PF17167)
391574.VSWAT3_15157PF01609
391574.VSWAT3_05496PF01609
391574.VSWAT3_05926(PF00872)
391574.VSWAT3_23734PF00665
391574.VSWAT3_22170(PF03050)
391574.VSWAT3_07111(PF13508)
391574.VSWAT3_11723PF01609
391574.VSWAT3_13212PF01609
391574.VSWAT3_19781(PF00872)
391574.VSWAT3_13697PF01609
391574.VSWAT3_19491(PF00677)
391574.VSWAT3_25994PF01610
391574.VSWAT3_17938PF01609
391574.VSWAT3_00833(PF00075)
391574.VSWAT3_10481(PF03222)
391574.VSWAT3_10466PF02371
391574.VSWAT3_23034PF13518
391574.VSWAT3_04281PF00665
391574.VSWAT3_18648PF01609
391574.VSWAT3_12427PF01609
391574.VSWAT3_23969PF01609
391574.VSWAT3_03086PF01609
391574.VSWAT3_25344(PF00872)
391574.VSWAT3_11733PF01609not used
391574.VSWAT3_07381PF02371
391574.VSWAT3_12352(PF02631)
391574.VSWAT3_16635(PF13401)
391574.VSWAT3_21645PF00238not used
391574.VSWAT3_02751PF00665
391574.VSWAT3_17583(PF17167)
391574.VSWAT3_00445PF01609
391574.VSWAT3_17078PF00665
391574.VSWAT3_02621PF02371
391574.VSWAT3_10103(PF13401)
391574.VSWAT3_26891(PF13401)
391574.VSWAT3_15773PF00665
391574.VSWAT3_09178PF00665
391574.VSWAT3_01855PF00665
391574.VSWAT3_11181PF00665
391574.VSWAT3_15177PF01609
391574.VSWAT3_15429PF00665
391574.VSWAT3_03761PF00665
391574.VSWAT3_15224PF00665
391574.VSWAT3_23974PF01117
391574.VSWAT3_22070PF01610
391574.VSWAT3_22572PF00665
391574.VSWAT3_02961PF02371
391574.VSWAT3_22080PF00665
391574.VSWAT3_21980PF01609
391574.VSWAT3_03211PF01609
391574.VSWAT3_22792PF02371
391574.VSWAT3_06861PF01610
391574.VSWAT3_06866PF01610not used
391574.VSWAT3_07396(PF06042)
391574.VSWAT3_19218PF01610
391574.VSWAT3_21690PF01609
391574.VSWAT3_02036(PF00872)
391574.VSWAT3_01850PF00665
391574.VSWAT3_00290PF00665
391574.VSWAT3_25829(PF03050)
391574.VSWAT3_20320(PF00872)
391574.VSWAT3_20325PF02371
391574.VSWAT3_26406PF02371
391574.VSWAT3_00185PF01609
391574.VSWAT3_14167PF01610
391574.VSWAT3_24469(PF13401)
391574.VSWAT3_24984PF01610
391574.VSWAT3_05226PF01609
391574.VSWAT3_05131PF01609
391574.VSWAT3_18243(PF00872)
391574.VSWAT3_18248PF00665
391574.VSWAT3_05351PF01609
391574.VSWAT3_15167PF01610
391574.VSWAT3_09723(PF13401)
391574.VSWAT3_09728PF00665
391574.VSWAT3_04196(PF07478)
391574.VSWAT3_11406PF00665
391574.VSWAT3_15434PF02371
391574.VSWAT3_12197PF01609
391574.VSWAT3_23944PF02371
391574.VSWAT3_22415PF01610
391574.VSWAT3_13157PF01610
391574.VSWAT3_01935PF05887
391574.VSWAT3_02001PF00665
391574.VSWAT3_16270PF01609
391574.VSWAT3_24499PF01609
391574.VSWAT3_06291PF01609
391574.VSWAT3_20625PF00154
391574.VSWAT3_20485(PF13401)
391574.VSWAT3_25814(PF03050)
391574.VSWAT3_10128PF01610
391574.VSWAT3_24474PF00665
391574.VSWAT3_18583PF01610
391574.VSWAT3_15753PF01610
391574.VSWAT3_26781PF13518
391574.VSWAT3_04616PF01610
391574.VSWAT3_23174PF01610
391574.VSWAT3_09738PF01610
391574.VSWAT3_18723(PF02631)
391574.VSWAT3_23799PF01609
391574.VSWAT3_22135PF01609
391574.VSWAT3_06591PF01609
391574.VSWAT3_16265PF01609
391574.VSWAT3_21940PF01610
391574.VSWAT3_21945PF01610
391574.VSWAT3_24049(PF00872)
391574.VSWAT3_20120(PF17167)
391574.VSWAT3_20490PF00665
391574.VSWAT3_20300(PF01121)not used
391574.VSWAT3_20305(PF01121)not used
391574.VSWAT3_05371(PF01554)
391574.VSWAT3_05751PF01609
391574.VSWAT3_08186PF00238not used
391574.VSWAT3_22125PF01609not used
391574.VSWAT3_15439PF01610
391574.VSWAT3_07216(PF13508)
391574.VSWAT3_22435PF01610
391574.VSWAT3_25304PF02371
391574.VSWAT3_19426PF01610
391574.VSWAT3_07321PF00665

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 2.375 (19/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================