Effective results for Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 (eggnog40)

Summary

Number of putative secreted proteins: 123
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 22 eukaryotic-like domains, contained in 123 proteins (18 high, 105 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
335541.Swol_0165PF13290 (PF13205)ER
335541.Swol_1701(PF01257) (PF10589)ER
335541.Swol_1966(PF13287)ER
335541.Swol_1010(PF07927)mitochondrial
335541.Swol_1961(PF13287)ER
335541.Swol_0170(PF13205)ER
335541.Swol_1565(PF01966)(mitochondrial)
335541.Swol_1963(PF13287)ER
335541.Swol_1189(PF13205)ER
335541.Swol_1986(PF13205)ER
335541.Swol_2424(PF01966)ER
335541.Swol_0348(PF01966)mitochondrial
335541.Swol_0755PF13290ER
335541.Swol_1968PF13290mitochondrial; ER
335541.Swol_1962(PF13287)ER
335541.Swol_0657(PF10589)(mitochondrial)
335541.Swol_0647(PF01966)(mitochondrial)
335541.Swol_2487(PF13205)ER
335541.Swol_1078PF13290(mitochondrial); mitochondrial
335541.Swol_1320(PF01966)mitochondrial; (mitochondrial)
335541.Swol_1831(PF10588)ER; (ER)
335541.Swol_1804(PF01930)mitochondrial; (mitochondrial)
335541.Swol_0141PF13290ER
335541.Swol_0145(PF01909)(ER)
335541.Swol_0309(PF13336) PF02550
335541.Swol_0787(PF13336) PF02550
335541.Swol_1166(PF05598) (PF01609)
335541.Swol_1378(PF03442)plastid
335541.Swol_1744(PF13336) PF02550
335541.Swol_2436(PF10588) (PF02256)
335541.Swol_2502(PF05598) (PF01609)
335541.Swol_1343(PF05598) (PF01609)
335541.Swol_0741(PF05598) (PF01609)
335541.Swol_0138(PF05598) (PF01609)
335541.Swol_1661(PF07927)(mitochondrial)
335541.Swol_1881(PF05598) (PF01609)
335541.Swol_1747(PF05598) (PF01609)
335541.Swol_0720(PF05598) (PF01609)
335541.Swol_0436(PF13336) PF02550
335541.Swol_1254(PF01966)ER
335541.Swol_2128(PF13336) PF02550
335541.Swol_1014(PF13336) PF02550
335541.Swol_1017(PF10588) (PF02256)
335541.Swol_2465(PF05598) (PF01609)
335541.Swol_0709(PF05598) (PF01609)
335541.Swol_1076PF13290 (PF03442)
335541.Swol_1453PF04212(ER)
335541.Swol_0059PF03452(mitochondrial)
335541.Swol_1056(PF05598) (PF01609)
335541.Swol_1932(PF13336) PF02550
335541.Swol_1735(PF13336) PF02550
335541.Swol_0521(PF05598) (PF01609)
335541.Swol_1147(PF13336) PF02550
335541.Swol_0206(PF01909)
335541.Swol_0337(PF01966)
335541.Swol_1799(PF01966)
335541.Swol_0152(PF01609)
335541.Swol_0158(PF01966)
335541.Swol_2557(PF01869)
335541.Swol_2150(PF01966)
335541.Swol_1756(PF01966)
335541.Swol_1757(PF05598)
335541.Swol_0499(PF01909)
335541.Swol_0783(PF01257)
335541.Swol_0784(PF10589)
335541.Swol_1019(PF01257)
335541.Swol_1967PF13290
335541.Swol_1945(PF01869)
335541.Swol_0221(PF01909)
335541.Swol_0310(PF05598)
335541.Swol_0794(PF07927)
335541.Swol_2407(PF01966)
335541.Swol_2404(PF01966)
335541.Swol_0638(PF01909)
335541.Swol_0290(PF05598)
335541.Swol_0573(PF07927)
335541.Swol_1426(PF01966)
335541.Swol_0603(PF01909)
335541.Swol_1728(PF01909)
335541.Swol_2517(PF01930)
335541.Swol_2518(PF01966)
335541.Swol_1502(PF01966)
335541.Swol_1509(PF01966)
335541.Swol_0632(PF01869)
335541.Swol_2451(PF05598)
335541.Swol_0352(PF16983)
335541.Swol_1041(PF01966)
335541.Swol_0621(PF07927)
335541.Swol_1772(PF01966)
335541.Swol_1745(PF01609)
335541.Swol_1095(PF01409)
335541.Swol_1094(PF01409)
335541.Swol_0656(PF01257)
335541.Swol_1705(PF01609)
335541.Swol_1702(PF01257)
335541.Swol_1894(PF01966)
335541.Swol_0785(PF10588)
335541.Swol_1018(PF10589)
335541.Swol_0548(PF01909)
335541.Swol_0428(PF01869)
335541.Swol_1602(PF01966)
335541.Swol_2001(PF01609)
335541.Swol_2468(PF13205)
335541.Swol_2130(PF01966)
335541.Swol_0096(PF01966)
335541.Swol_0411(PF01869)
335541.Swol_1298(PF01909)
335541.Swol_1102(PF01909)
335541.Swol_0718(PF05598)
335541.Swol_1592(PF05598)
335541.Swol_1828(PF10589)
335541.Swol_1829(PF01257)
335541.Swol_0279(PF01966)
335541.Swol_0479(PF01930)
335541.Swol_2238(PF01609)
335541.Swol_0514(PF05598)
335541.Swol_1024(PF10589)
335541.Swol_1025(PF01257)
335541.Swol_1029(PF10588)
335541.Swol_0219(PF07927)
335541.Swol_0452(PF01869)
335541.Swol_0523(PF09419)
335541.Swol_1926(PF02256)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================