Effective results for Frankia alni ACN14a (eggnog40)
Summary
Number of putative secreted proteins: 344
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 48 eukaryotic-like domains, contained in 344 proteins (34 high, 310 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 326424.FRAAL5139 | (PF13271) (PF00400) | (mitochondrial) | |||
| 326424.FRAAL0348 | (PF14765) (PF00698) | mitochondrial; (mitochondrial) | |||
| 326424.FRAAL1676 | (PF14765) (PF00698) | (ER) | |||
| 326424.FRAAL5631 | (PF13458) | mitochondrial | |||
| 326424.FRAAL4902 | (PF06965) | (mitochondrial) | |||
| 326424.FRAAL4224 | (PF02224) | mitochondrial | |||
| 326424.FRAAL6670 | (PF02569) | mitochondrial | |||
| 326424.FRAAL6192 | (PF00406) | (mitochondrial) | |||
| 326424.FRAAL3467 | (PF13458) | ER | |||
| 326424.FRAAL3442 | (PF00296) | ER | |||
| 326424.FRAAL1332 | (PF01636) | (mitochondrial) | |||
| 326424.FRAAL1102 | (PF00406) | (mitochondrial) | |||
| 326424.FRAAL6171 | (PF00296) | mitochondrial; (mitochondrial) | |||
| 326424.FRAAL3234 | (PF03988) | (mitochondrial) | |||
| 326424.FRAAL4618 | (PF13458) | mitochondrial | |||
| 326424.FRAAL4616 | (PF13458) | ER | |||
| 326424.FRAAL0761 | (PF00296) | (ER); ER | |||
| 326424.FRAAL3391 | (PF13458) | ER | |||
| 326424.FRAAL3964 | (PF00296) | mitochondrial | |||
| 326424.FRAAL4885 | (PF00296) | (mitochondrial) | |||
| 326424.FRAAL1244 | (PF00400) | mitochondrial | |||
| 326424.FRAAL4378 | (PF13087) | (mitochondrial) | |||
| 326424.FRAAL5563 | (PF00400) | (mitochondrial) | |||
| 326424.FRAAL6033 | (PF00899) | mitochondrial | |||
| 326424.FRAAL3800 | (PF13458) | ER | |||
| 326424.FRAAL3058 | (PF00296) | (ER) | |||
| 326424.FRAAL1593 | PF07250 | (mitochondrial) | |||
| 326424.FRAAL2841 | (PF13458) | mitochondrial | |||
| 326424.FRAAL5668 | (PF00698) | (mitochondrial) | |||
| 326424.FRAAL3527 | (PF13458) | (mitochondrial) | |||
| 326424.FRAAL5271 | (PF01636) | mitochondrial | |||
| 326424.FRAAL0388 | (PF00296) | ER; (ER) | |||
| 326424.FRAAL3097 | (PF13458) | ER | |||
| 326424.FRAAL5625 | (PF10503) | (mitochondrial) | |||
| 326424.FRAAL3759 | (PF03015) | (mitochondrial) | |||
| 326424.FRAAL5359 | (PF00400) | mitochondrial; (mitochondrial) | |||
| 326424.FRAAL5377 | (PF00296) | (mitochondrial) | |||
| 326424.FRAAL4957 | PF07250 | mitochondrial | |||
| 326424.FRAAL2051 | (PF05050) | (mitochondrial) | |||
| 326424.FRAAL4421 | (PF00296) | (mitochondrial) | |||
| 326424.FRAAL2454 | (PF07519) | (mitochondrial) | |||
| 326424.FRAAL4991 | (PF00899) | ER | |||
| 326424.FRAAL1482 | (PF13458) | ER | |||
| 326424.FRAAL1948 | (PF06965) | mitochondrial | |||
| 326424.FRAAL1942 | (PF11999) | mitochondrial | |||
| 326424.FRAAL2624 | (PF13458) | ER | |||
| 326424.FRAAL3174 | (PF02156) | (mitochondrial); plastid | |||
| 326424.FRAAL6411 | (PF00400) | mitochondrial | |||
| 326424.FRAAL5775 | (PF10503) | (mitochondrial); (plastid) | |||
| 326424.FRAAL4112 | (PF01636) | ER; (ER) | |||
| 326424.FRAAL1792 | (PF02156) | ER | |||
| 326424.FRAAL6048 | (PF13361) | ER; (ER) | |||
| 326424.FRAAL2561 | (PF14765) (PF00698) | (mitochondrial) | |||
| 326424.FRAAL5552 | (PF13458) | ER | |||
| 326424.FRAAL3306 | (PF00400) | (mitochondrial) | |||
| 326424.FRAAL6580 | (PF02223) | mitochondrial | |||
| 326424.FRAAL0639 | (PF10503) | (ER) | |||
| 326424.FRAAL3532 | (PF13458) | mitochondrial | |||
| 326424.FRAAL6287 | (PF13458) | ER; (ER) | |||
| 326424.FRAAL2045 | (PF05050) | mitochondrial; (mitochondrial) | |||
| 326424.FRAAL2047 | (PF05050) | (mitochondrial) | |||
| 326424.FRAAL5386 | (PF00296) | (mitochondrial) | |||
| 326424.FRAAL5034 | (PF13458) | (mitochondrial) | |||
| 326424.FRAAL3447 | (PF00698) | (mitochondrial) | |||
| 326424.FRAAL3987 | (PF13374) PF13676 | ||||
| 326424.FRAAL1144 | (PF13458) | (mitochondrial) | |||
| 326424.FRAAL3617 | (PF13271) (PF00400) | ||||
| 326424.FRAAL3954 | PF13676 (PF00400) | ||||
| 326424.FRAAL2989 | (PF00698) (PF14765) | ||||
| 326424.FRAAL3967 | (PF05050) | (mitochondrial) | |||
| 326424.FRAAL6687 | PF02026 | (mitochondrial) | |||
| 326424.FRAAL3334 | (PF13374) PF13676 | ||||
| 326424.FRAAL4144 | (PF13374) PF13676 | ||||
| 326424.FRAAL0349 | (PF00698) (PF14765) | ||||
| 326424.FRAAL0346 | (PF00698) (PF14765) | ||||
| 326424.FRAAL0347 | (PF14765) (PF00698) | ||||
| 326424.FRAAL5062 | (PF09348) | (mitochondrial) | |||
| 326424.FRAAL0566 | (PF00296) | (ER) | |||
| 326424.FRAAL3715 | (PF00296) | plastid | |||
| 326424.FRAAL2728 | (PF06965) | (ER); not used | |||
| 326424.FRAAL5499 | PF13676 (PF00400) | ||||
| 326424.FRAAL3899 | (PF13374) PF13676 | ||||
| 326424.FRAAL0601 | (PF01928) | (ER) | |||
| 326424.FRAAL1550 | (PF14765) (PF00698) | ||||
| 326424.FRAAL1289 | (PF00698) (PF14765) | ||||
| 326424.FRAAL3568 | (PF00296) | (plastid) | |||
| 326424.FRAAL6185 | (PF00296) | (mitochondrial) | |||
| 326424.FRAAL4024 | (PF00296) | (ER) | |||
| 326424.FRAAL3249 | (PF13271) | (mitochondrial) | |||
| 326424.FRAAL0468 | (PF13374) PF13676 | ||||
| 326424.FRAAL0246 | (PF13087) | plastid | |||
| 326424.FRAAL1753 | PF13676 (PF00400) | ||||
| 326424.FRAAL1754 | PF13676 (PF00400) | ||||
| 326424.FRAAL2479 | (PF00296) | plastid | |||
| 326424.FRAAL2913 | (PF00698) (PF14765) | ||||
| 326424.FRAAL2319 | PF13676 | (mitochondrial) | |||
| 326424.FRAAL3193 | (PF00698) (PF14765) | ||||
| 326424.FRAAL4996 | (PF13374) PF13676 | ||||
| 326424.FRAAL1962 | (PF10503) | (ER) | |||
| 326424.FRAAL4833 | (PF00296) | (ER) | |||
| 326424.FRAAL0107 | PF13676 | (mitochondrial) | |||
| 326424.FRAAL4258 | (PF00296) | (ER) | |||
| 326424.FRAAL0919 | (PF01761) | (plastid) | |||
| 326424.FRAAL5891 | (PF02156) | (mitochondrial) | |||
| 326424.FRAAL0630 | PF13676 (PF00400) | ||||
| 326424.FRAAL2042 | (PF05050) | plastid | |||
| 326424.FRAAL4072 | (PF00698) (PF14765) | ||||
| 326424.FRAAL4071 | (PF00698) (PF14765) | ||||
| 326424.FRAAL2562 | (PF14765) (PF00698) | ||||
| 326424.FRAAL5636 | (PF13374) | ||||
| 326424.FRAAL3740 | (PF06441) | ||||
| 326424.FRAAL2447 | (PF01928) | ||||
| 326424.FRAAL3106 | (PF00296) | ||||
| 326424.FRAAL3824 | (PF13458) | ||||
| 326424.FRAAL3825 | (PF13459) | ||||
| 326424.FRAAL5342 | (PF13361) | ||||
| 326424.FRAAL5340 | (PF04909) | ||||
| 326424.FRAAL5613 | (PF13458) | ||||
| 326424.FRAAL2347 | (PF13374) | ||||
| 326424.FRAAL2345 | PF13676 | ||||
| 326424.FRAAL4963 | (PF00406) | ||||
| 326424.FRAAL2522 | (PF00296) | ||||
| 326424.FRAAL2524 | (PF04909) | ||||
| 326424.FRAAL3123 | (PF00296) | ||||
| 326424.FRAAL6442 | (PF00899) | ||||
| 326424.FRAAL5970 | (PF00296) | ||||
| 326424.FRAAL5976 | (PF13361) | ||||
| 326424.FRAAL5977 | (PF13087) | ||||
| 326424.FRAAL0472 | (PF13374) | ||||
| 326424.FRAAL5403 | (PF00296) | ||||
| 326424.FRAAL4943 | (PF00400) | ||||
| 326424.FRAAL2320 | PF13676 | ||||
| 326424.FRAAL5090 | (PF04455) | ||||
| 326424.FRAAL5959 | (PF04909) | ||||
| 326424.FRAAL4774 | (PF00296) | ||||
| 326424.FRAAL4770 | (PF01636) | ||||
| 326424.FRAAL1339 | (PF00400) | ||||
| 326424.FRAAL1337 | (PF01436) | ||||
| 326424.FRAAL3868 | (PF00296) | ||||
| 326424.FRAAL4432 | (PF00296) | ||||
| 326424.FRAAL6371 | (PF02569) | ||||
| 326424.FRAAL3427 | (PF00296) | ||||
| 326424.FRAAL2464 | (PF13458) | ||||
| 326424.FRAAL3211 | (PF08491) | ||||
| 326424.FRAAL4639 | (PF01761) | ||||
| 326424.FRAAL4452 | (PF00296) | ||||
| 326424.FRAAL0296 | (PF04909) | ||||
| 326424.FRAL5465 | (PF00296) | ||||
| 326424.FRAAL3988 | (PF06101) | ||||
| 326424.FRAAL6358 | (PF03988) | ||||
| 326424.FRAAL1374 | (PF14311) | ||||
| 326424.FRAAL5469 | (PF00296) | ||||
| 326424.FRAAL5463 | (PF02569) | ||||
| 326424.FRAAL5461 | (PF06441) | ||||
| 326424.FRAAL5465 | (PF13458) | ||||
| 326424.FRAAL4846 | (PF00296) | ||||
| 326424.FRAAL2449 | (PF00296) | ||||
| 326424.FRAAL6246 | (PF02156) | ||||
| 326424.FRAAL3132 | (PF13458) | ||||
| 326424.FRAAL3237 | (PF04909) | ||||
| 326424.FRAAL3233 | (PF03988) | ||||
| 326424.FRAAL3131 | (PF04909) | ||||
| 326424.FRAAL3135 | (PF13458) | ||||
| 326424.FRAAL2617 | (PF04909) | ||||
| 326424.FRAAL3396 | (PF13459) | ||||
| 326424.FRAAL4860 | (PF13458) | ||||
| 326424.FRAAL4866 | (PF13458) | ||||
| 326424.FRAAL2429 | (PF04909) | ||||
| 326424.FRAAL2422 | (PF00296) | ||||
| 326424.FRAAL4671 | (PF01436) | ||||
| 326424.FRAAL2634 | (PF04909) | ||||
| 326424.FRAAL3373 | (PF01636) | ||||
| 326424.FRAAL3374 | (PF00296) | ||||
| 326424.FRAAL4802 | (PF00296) | ||||
| 326424.FRAAL0725 | (PF13458) | ||||
| 326424.FRAAL3582 | (PF13458) | ||||
| 326424.FRAAL1180 | PF13676 | ||||
| 326424.FRAAL3969 | (PF00296) | ||||
| 326424.FRAAL4883 | (PF01636) | ||||
| 326424.FRAAL3354 | (PF07519) | ||||
| 326424.FRAAL4354 | (PF13458) | ||||
| 326424.FRAAL5507 | PF13676 | ||||
| 326424.FRAAL3482 | (PF04909) | ||||
| 326424.FRAAL3483 | (PF02569) | ||||
| 326424.FRAAL4598 | (PF00400) | ||||
| 326424.FRAAL6050 | (PF00899) | ||||
| 326424.FRAAL6239 | (PF02156) | ||||
| 326424.FRAAL1418 | (PF00296) | ||||
| 326424.FRAAL5562 | PF13676 | ||||
| 326424.FRAAL0098 | (PF10503) | ||||
| 326424.FRAAL0327 | (PF04909) | ||||
| 326424.FRAAL0325 | (PF07519) | ||||
| 326424.FRAAL3947 | (PF01636) | ||||
| 326424.FRAAL0329 | (PF13458) | ||||
| 326424.FRAAL2253 | (PF02224) | ||||
| 326424.FRAAL3070 | (PF04909) | ||||
| 326424.FRAAL2800 | (PF00296) | ||||
| 326424.FRAAL0668 | (PF02223) | ||||
| 326424.FRAAL0662 | (PF04505) | ||||
| 326424.FRAAL5044 | (PF11999) | ||||
| 326424.FRAAL6038 | (PF13361) | ||||
| 326424.FRAAL6715 | (PF01636) | ||||
| 326424.FRAAL4141 | (PF01636) | ||||
| 326424.FRAAL5541 | (PF00400) | ||||
| 326424.FRAAL3055 | (PF01636) | ||||
| 326424.FRAAL2868 | (PF13459) | ||||
| 326424.FRAAL5061 | (PF09348) | ||||
| 326424.FRAAL2482 | (PF00296) | ||||
| 326424.FRAAL3501 | (PF04909) | ||||
| 326424.FRAAL3500 | (PF00296) | ||||
| 326424.FRAAL2070 | (PF00296) | ||||
| 326424.FRAAL0565 | PF13676 | ||||
| 326424.FRAAL2840 | (PF00296) | ||||
| 326424.FRAAL6433 | (PF05050) | ||||
| 326424.FRAAL1805 | (PF00755) | ||||
| 326424.FRAAL3525 | (PF04909) | ||||
| 326424.FRAAL0385 | (PF00296) | ||||
| 326424.FRAAL5493 | (PF01636) | ||||
| 326424.FRAAL3094 | (PF01636) | ||||
| 326424.FRAAL3096 | (PF04909) | ||||
| 326424.FRAAL3777 | (PF01636) | ||||
| 326424.FRAAL1826 | (PF01436) | ||||
| 326424.FRAAL3541 | (PF00296) | ||||
| 326424.FRAAL2706 | (PF02223) | ||||
| 326424.FRAAL2704 | (PF01928) | ||||
| 326424.FRAAL6623 | (PF00296) | ||||
| 326424.FRAAL4065 | (PF01636) | ||||
| 326424.FRAAL1611 | (PF00296) | ||||
| 326424.FRAAL3753 | (PF01636) | ||||
| 326424.FRAAL4930 | (PF00296) | ||||
| 326424.FRAAL4720 | PF13676 | ||||
| 326424.FRAAL0854 | PF00179 | ||||
| 326424.FRAAL0856 | (PF00899) | ||||
| 326424.FRAAL0853 | PF01398 | ||||
| 326424.FRAAL2518 | (PF00296) | ||||
| 326424.FRAAL6184 | (PF00296) | ||||
| 326424.FRAAL6329 | (PF13361) | ||||
| 326424.FRAAL1866 | PF02026 | ||||
| 326424.FRAAL4742 | (PF00296) | ||||
| 326424.FRAAL4219 | (PF03803) | ||||
| 326424.FRAAL2749 | PF12851 | ||||
| 326424.FRAAL3830 | (PF13458) | ||||
| 326424.FRAAL0873 | (PF00296) | ||||
| 326424.FRAAL0871 | (PF01636) | ||||
| 326424.FRAAL3793 | (PF00296) | ||||
| 326424.FRAAL0792 | (PF13458) | ||||
| 326424.FRAAL0267 | (PF13361) | ||||
| 326424.FRAAL4056 | (PF07519) | ||||
| 326424.FRAAL0072 | (PF00296) | ||||
| 326424.FRAAL3478 | (PF04909) | ||||
| 326424.FRAAL5311 | PF13676 | ||||
| 326424.FRAAL0241 | (PF13374) | ||||
| 326424.FRAAL6496 | (PF01928) | ||||
| 326424.FRAAL3875 | (PF01636) | ||||
| 326424.FRAAL6801 | (PF00899) | ||||
| 326424.FRAAL6773 | (PF00648) | ||||
| 326424.FRAAL1691 | (PF06441) | ||||
| 326424.FRAAL1690 | (PF01636) | ||||
| 326424.FRAAL2914 | (PF00698) | ||||
| 326424.FRAAL4422 | (PF00296) | ||||
| 326424.FRAAL0427 | (PF01436) | ||||
| 326424.FRAAL0426 | (PF01436) | ||||
| 326424.FRAAL0428 | (PF01436) | ||||
| 326424.FRAAL3435 | (PF00296) | ||||
| 326424.FRAAL2455 | (PF13087) | ||||
| 326424.FRAAL2938 | (PF00400) | ||||
| 326424.FRAAL2594 | (PF06441) | ||||
| 326424.FRAAL1152 | (PF13361) | ||||
| 326424.FRAAL5476 | (PF00296) | ||||
| 326424.FRAAL4875 | (PF00296) | ||||
| 326424.FRAAL4879 | (PF04909) | ||||
| 326424.FRAAL1965 | (PF00400) | ||||
| 326424.FRAAL3952 | (PF13459) | ||||
| 326424.FRAAL0975 | PF08213 | not used | |||
| 326424.FRAAL5285 | (PF04909) | ||||
| 326424.FRAAL3365 | (PF13458) | ||||
| 326424.FRAAL3364 | (PF13459) | ||||
| 326424.FRAAL4832 | (PF00296) | ||||
| 326424.FRAAL4830 | (PF00296) | ||||
| 326424.FRAAL4834 | (PF00296) | ||||
| 326424.FRAAL0555 | (PF06441) | ||||
| 326424.FRAAL0739 | (PF00296) | ||||
| 326424.FRAAL2998 | PF05671 | ||||
| 326424.FRAAL2996 | (PF13459) | ||||
| 326424.FRAAL2995 | (PF13458) | ||||
| 326424.FRAAL3343 | (PF00296) | ||||
| 326424.FRAAL3344 | (PF00296) | ||||
| 326424.FRAAL2834 | (PF00296) | ||||
| 326424.FRAAL2837 | (PF04909) | ||||
| 326424.FRAAL0695 | (PF13361) | ||||
| 326424.FRAAL0698 | (PF00400) | ||||
| 326424.FRAAL1549 | (PF00698) | ||||
| 326424.FRAAL3661 | (PF06441) | ||||
| 326424.FRAAL3938 | PF13676 | ||||
| 326424.FRAAL6340 | (PF00400) | ||||
| 326424.FRAAL0918 | (PF00899) | ||||
| 326424.FRAAL3063 | (PF13458) | ||||
| 326424.FRAAL1797 | (PF00296) | ||||
| 326424.FRAAL3499 | (PF04909) | ||||
| 326424.FRAAL0676 | (PF04909) | ||||
| 326424.FRAAL4309 | (PF06965) | ||||
| 326424.FRAAL6047 | (PF13361) | ||||
| 326424.FRAAL5559 | (PF01636) | ||||
| 326424.FRAAL4793 | (PF00296) | ||||
| 326424.FRAAL4791 | (PF00296) | ||||
| 326424.FRAAL4799 | (PF00296) | ||||
| 326424.FRAAL3305 | (PF00296) | ||||
| 326424.FRAAL4095 | (PF00296) | ||||
| 326424.FRAAL0658 | (PF04505) | ||||
| 326424.FRAAL0659 | (PF04505) | ||||
| 326424.FRAAL0656 | (PF02156) | ||||
| 326424.FRAAL4899 | (PF13087) | ||||
| 326424.FRAAL4884 | (PF00296) | ||||
| 326424.FRAAL5329 | (PF01636) | ||||
| 326424.FRAAL4150 | (PF00400) | ||||
| 326424.FRAAL3511 | (PF00296) | ||||
| 326424.FRAAL4451 | (PF00296) | ||||
| 326424.FRAAL0358 | (PF00296) | ||||
| 326424.FRAAL3722 | (PF00400) | ||||
| 326424.FRAAL3725 | (PF01636) | ||||
| 326424.FRAAL4068 | (PF13458) | ||||
| 326424.FRAAL0372 | (PF01234) | ||||
| 326424.FRAAL3884 | (PF01636) | ||||
| 326424.FRAAL1620 | (PF00102) | ||||
| 326424.FRAAL3709 | (PF00296) | ||||
| 326424.FRAAL5018 | PF13676 | ||||
| 326424.FRAAL3147 | (PF00296) | ||||
| 326424.FRAAL3554 | (PF13458) | ||||
| 326424.FRAAL3559 | (PF01636) | ||||
| 326424.FRAAL4266 | (PF00296) | ||||
| 326424.FRAAL5245 | (PF01761) | ||||
| 326424.FRAAL0391 | (PF13458) | ||||
| 326424.FRAAL0801 | PF13676 | ||||
| 326424.FRAAL4070 | (PF00698) | ||||
| 326424.FRAAL2893 | (PF13459) | ||||
| 326424.FRAAL2891 | (PF01636) | ||||
| 326424.FRAAL5384 | (PF00296) | ||||
| 326424.FRAAL0233 | (PF00296) | ||||
| 326424.FRAAL0234 | (PF00296) | ||||
| 326424.FRAAL2563 | (PF00698) | ||||
| 326424.FRAAL2560 | (PF00698) | ||||
| 326424.FRAAL3169 | (PF01636) | ||||
| 326424.FRAAL3161 | (PF03988) | ||||
| 326424.FRAAL1834 | PF13676 |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: NO (FDR = 0.5 %)
- Functional Type III secretion system: N.D.
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: N.D.
Individual results for each secretion system
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
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