Metamenu

Genomes encoding eukaryotic-like proteins

PF13458 Periplasmic binding protein

Copy number in non-pathogens:
Mean=4.11 Stddev=7.53

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bradyrhizobium diazoefficiens s 5 46
Rhodopseudomonas sp. B29 s 4 41
Achromobacter piechaudii NBRC 102461 s 4 35
Bradyrhizobium japonicum USDA 6 s 8 67
Bradyrhizobium sp. STM 3843 s 6 55
Bradyrhizobium sp. STM 3809 s 6 52
Bradyrhizobium sp. ORS 278 s 5 49
Frankia alni ACN14a s 4 36
Bradyrhizobium sp. ORS 375 s 7 57
Achromobacter xylosoxidans NH44784-1996 s 4 36
Bradyrhizobium sp. s 5 42
Methylobacterium nodulans ORS 2060 s 5 44
Methylobacterium sp. 4-46 s 4 37
Variovorax sp. CF313 s 4 38
Acidovorax sp. CF316 s 5 46
Herbaspirillum sp. CF444 s 4 38
Bradyrhizobium sp. YR681 s 7 57
Bradyrhizobium sp. WSM2793 s 7 59
Frankia sp. CN3 s 12 97
Bradyrhizobium elkanii USDA 76 s 10 82
Methylobacterium sp. WSM2598 s 4 39
Bradyrhizobium sp. WSM471 s 6 52
Bradyrhizobium sp. WSM1253 s 6 50
Frankia sp. Cc1.17 s 5 43
Bradyrhizobium sp. WSM3983 s 7 60
Bradyrhizobium elkanii USDA 3259 s 10 83
Bradyrhizobium japonicum USDA 38 s 9 72
Bradyrhizobium sp. Tv2a-2 s 7 63
Bradyrhizobium sp. Ai1a-2 s 8 68
Bradyrhizobium japonicum USDA 124 s 6 55
Bradyrhizobium japonicum USDA 6 s 8 68
Bradyrhizobium japonicum USDA 122 s 6 56
Bradyrhizobium sp. WSM1743 s 5 49
Bradyrhizobium sp. ARR65 s 6 56
Bradyrhizobium japonicum USDA 4 s 7 59
Bradyrhizobium sp. Ec3.3 s 7 60
Bradyrhizobium elkanii WSM1741 s 6 52
Bradyrhizobium sp. Cp5.3 s 7 62
Bradyrhizobium sp. WSM4349 s 6 55
Bradyrhizobium japonicum USDA 123 s 8 69
Bradyrhizobium elkanii USDA 3254 s 10 84
Bradyrhizobium elkanii WSM2783 s 10 82
Bradyrhizobium japonicum USDA 135 s 6 50
Bradyrhizobium sp. USDA 3384 s 9 75
Bradyrhizobium sp. th.b2 s 10 82
Frankia discariae s 4 37
Frankia sp. EUN1f s 7 63
Afipia clevelandensis ATCC 49720 s 4 40
Bradyrhizobium sp. CCGE-LA001 s 7 61
Herbaspirillum lusitanum P6-12 s 4 36
Bradyrhizobium elkanii USDA 94 s 10 86
Afipia broomeae ATCC 49717 s 6 50
Bradyrhizobium sp. WSM1417 s 6 53
Achromobacter xylosoxidans X02736 s 4 37
Frankia sp. EAN1pec s 6 53
Bradyrhizobium sp. BTAi1 s 6 50
Verminephrobacter eiseniae EF01-2 s 4 40
Bradyrhizobium japonicum s 8 68
Bradyrhizobium japonicum SEMIA 5079 s 8 66
Bradyrhizobium diazoefficiens SEMIA 5080 s 6 56
Frankia sp. CpI1-S s 4 36
Frankia sp. CpI1-P s 4 36
Afipia sp. NBIMC_P1-C1 s 5 47
Afipia sp. NBIMC_P1-C2 s 5 47
Afipia sp. NBIMC_P1-C3 s 5 47
Afipia sp. OHSU_II-uncloned s 5 47
Bradyrhizobium sp. OHSU_III s 9 76
Afipia sp. OHSU_I-C6 s 5 48
Afipia sp. OHSU_I-C4 s 5 48
Afipia sp. OHSU_I-uncloned s 5 48
Afipia sp. OHSU_II-C2 s 5 48
Afipia sp. OHSU_II-C1 s 5 48
Azospirillum lipoferum s 6 54
Bradyrhizobium japonicum s 8 71
Achromobacter xylosoxidans s 4 39
Achromobacter xylosoxidans s 4 37
Bradyrhizobium elkanii s 9 76
Bradyrhizobium japonicum s 8 68
Methylobacterium platani JCM 14648 s 5 47
Bradyrhizobium diazoefficiens USDA 110 s 7 60
Bradyrhizobium japonicum s 6 56
Achromobacter xylosoxidans s 4 35
Achromobacter xylosoxidans s 4 36
Bradyrhizobium diazoefficiens s 6 56
Xylophilus ampelinus s 4 41
Bradyrhizobium liaoningense s 7 60
Achromobacter sp. AR476-2 s 6 52
Tardiphaga robiniae s 8 65
Bradyrhizobium elkanii s 10 86
Bradyrhizobium elkanii s 10 84
Bradyrhizobium icense s 6 55
Achromobacter xylosoxidans s 4 37
Bradyrhizobium japonicum s 8 70
Bradyrhizobium elkanii s 10 83
Achromobacter xylosoxidans s 5 49
Achromobacter denitrificans s 6 51
Achromobacter xylosoxidans s 6 51
Bradyrhizobium canariense s 6 55
Bradyrhizobium canariense s 6 55
Bradyrhizobium canariense s 7 57
Bradyrhizobium canariense s 7 57
Bradyrhizobium canariense s 7 57
Bradyrhizobium canariense s 6 55
Bradyrhizobium canariense s 6 51
Bradyrhizobium canariense s 6 51
Bradyrhizobium japonicum s 8 66
Bradyrhizobium canariense s 7 57
Bradyrhizobium canariense s 6 53
Bradyrhizobium canariense s 6 51
Bradyrhizobium canariense s 6 51
Bradyrhizobium canariense s 6 51
Bradyrhizobium canariense s 6 51
Herbaspirillum frisingense s 4 39
Achromobacter xylosoxidans s 6 52
Achromobacter denitrificans s 6 52
Bradyrhizobium diazoefficiens USDA 110 s 7 60

*p=pathogen;s=symbiont