Effective results for Shewanella baltica OS155 (eggnog40)

Summary

Number of putative secreted proteins: 920
- Predicted by EffectiveT3: 266 (high confidence), 287 (low confidence)
- Predicted by EffectiveCCBD: 29 within, 22 before, 46 behind expected region 25..70aa
- Predicted by T4SEpre: 119
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 209 proteins (188 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
325240.Sbal_1015		+	+		ER
325240.Sbal_3859	+			(PF16983)	(ER)
325240.Sbal_3066		(<)	+		ER
325240.Sbal_4312				PF00665 (PF13276)	mitochondrial
325240.Sbal_3335			+		ER
325240.Sbal_3339		(<)			mitochondrial
325240.Sbal_0687				(PF00849)	(ER); (mitochondrial)
325240.Sbal_3067			+		(ER)
325240.Sbal_3660		(<)			ER
325240.Sbal_2224		(<)			ER
325240.Sbal_0233			+		ER
325240.Sbal_4302	+				(mitochondrial); plastid
325240.Sbal_2329	+				(mitochondrial); plastid
325240.Sbal_3858			+		ER
325240.Sbal_2589				(PF09127)	ER
325240.Sbal_3497			+		ER
325240.Sbal_3491	+				(mitochondrial)
325240.Sbal_0097		(>)			ER
325240.Sbal_0256		(>)			ER
325240.Sbal_1418	+				ER
325240.Sbal_0113			+		ER
325240.Sbal_3446			+		ER
325240.Sbal_3047	+				(ER)
325240.Sbal_0086		(<)			ER
325240.Sbal_3501		(<)			ER
325240.Sbal_1684		+			mitochondrial
325240.Sbal_1682		(>)			ER
325240.Sbal_3871		+			ER
325240.Sbal_2300		(>)			ER
325240.Sbal_0737			+		(mitochondrial)
325240.Sbal_2645				PF00665	(ER)
325240.Sbal_1539	+				ER
325240.Sbal_2976			+		ER; (ER)
325240.Sbal_2290	+				(ER); (plastid)
325240.Sbal_3216			+		ER
325240.Sbal_2733		(>)			ER
325240.Sbal_0637			+		ER
325240.Sbal_3720			+		mitochondrial
325240.Sbal_0169		+			(ER); ER
325240.Sbal_0715		(>)			ER
325240.Sbal_1340			+		ER
325240.Sbal_1013				(PF00849)	ER
325240.Sbal_2358			+		ER
325240.Sbal_2844		(>)			ER
325240.Sbal_3880			+		ER
325240.Sbal_3223			+		mitochondrial
325240.Sbal_2935	+	(>)			plastid
325240.Sbal_3083	+				ER; (ER)
325240.Sbal_1743		(>)			ER
325240.Sbal_3899			+		ER
325240.Sbal_2941		(>)			ER
325240.Sbal_3700			+		ER
325240.Sbal_1565				(PF01117)	ER
325240.Sbal_0147	+				(ER); plastid
325240.Sbal_1030		+			(ER); ER
325240.Sbal_2447			+		ER
325240.Sbal_2136		(>)			ER
325240.Sbal_2551		(>)			ER
325240.Sbal_2557		(>)			ER
325240.Sbal_1046	+				(mitochondrial)
325240.Sbal_1043	+				(mitochondrial); plastid
325240.Sbal_3889			+		ER
325240.Sbal_2630		(>)			ER
325240.Sbal_2936	+	(>)			plastid
325240.Sbal_0122			+		ER
325240.Sbal_0237	+				(mitochondrial)
325240.Sbal_1806			+		(ER); (mitochondrial)
325240.Sbal_1570		(>)			ER
325240.Sbal_3148		+			ER
325240.Sbal_3022			+		(ER); plastid
325240.Sbal_3376		(<)			mitochondrial; (mitochondrial)
325240.Sbal_2468		+			ER
325240.Sbal_3111		(>)			ER
325240.Sbal_1535	+				(ER)
325240.Sbal_1802	+				(mitochondrial); (plastid)
325240.Sbal_1262		(>)			mitochondrial; (mitochondrial)
325240.Sbal_0445			+		ER
325240.Sbal_2767			+		ER
325240.Sbal_3964			+		ER
325240.Sbal_2213		(<)			ER
325240.Sbal_3560			+		(mitochondrial)
325240.Sbal_1458			+		ER
325240.Sbal_3238		(>)			mitochondrial
325240.Sbal_1674			+		ER
325240.Sbal_1072			+		(mitochondrial)
325240.Sbal_2773			+		ER
325240.Sbal_0456	+	+			(plastid)
325240.Sbal_3308		+			ER
325240.Sbal_3362		(>)			(mitochondrial); mitochondrial
325240.Sbal_2179		(<)			(mitochondrial)
325240.Sbal_1746			+		ER
325240.Sbal_3384		(>)			ER; (ER)
325240.Sbal_3826			+		(mitochondrial)
325240.Sbal_0937		(>)			ER
325240.Sbal_0200			+		ER
325240.Sbal_1247	+				(ER)
325240.Sbal_1243	+				mitochondrial; (mitochondrial)
325240.Sbal_1082			+		ER
325240.Sbal_1583			+		mitochondrial
325240.Sbal_1362			+		(mitochondrial)
325240.Sbal_0908		+			ER
325240.Sbal_0902				(PF00849)	mitochondrial
325240.Sbal_2533			+		ER
325240.Sbal_2954		(>)			ER
325240.Sbal_3249	(+)				(ER)
325240.Sbal_0912				PF13936 PF00665
325240.Sbal_3064				PF01527	(ER)
325240.Sbal_3065				PF00665 (PF13276)
325240.Sbal_3062				PF01527	(mitochondrial)
325240.Sbal_3484	+				(plastid)
325240.Sbal_1931				PF01527	(mitochondrial)
325240.Sbal_3667	(+)				(mitochondrial)
325240.Sbal_0460				PF00665 (PF13276)
325240.Sbal_1138				PF01695	(ER)
325240.Sbal_4308				PF01527	(ER)
325240.Sbal_2322				PF01695	(ER)
325240.Sbal_3790				PF01695	(ER)
325240.Sbal_0672				PF13936 PF00665
325240.Sbal_3498	(+)				ER
325240.Sbal_0783				PF13936 PF00665
325240.Sbal_3679	(+)				ER
325240.Sbal_0378	(+)				(mitochondrial)
325240.Sbal_0894	+		+
325240.Sbal_0253				PF01527	(mitochondrial)
325240.Sbal_1127				PF01695	(ER)
325240.Sbal_4319				PF01527	(mitochondrial)
325240.Sbal_4310				PF01527	(mitochondrial)
325240.Sbal_2333				PF01527	(mitochondrial)
325240.Sbal_2798	(+)				ER
325240.Sbal_2020				PF01695	(ER)
325240.Sbal_3317	+				(plastid)
325240.Sbal_3314				PF00665 (PF13276)
325240.Sbal_2803	(+)				(mitochondrial); (plastid)
325240.Sbal_2806				PF01695	(ER)
325240.Sbal_3440				PF13936 PF00665
325240.Sbal_3682				PF01527	(mitochondrial)
325240.Sbal_3684				PF13936 PF00665
325240.Sbal_3686				PF13936 PF00665
325240.Sbal_1429	(+)				ER; (ER)
325240.Sbal_1935				PF00665 (PF13276)
325240.Sbal_0333	(+)				(ER); (plastid)
325240.Sbal_1752	+				(plastid)
325240.Sbal_1115	(+)				(ER)
325240.Sbal_1118				PF00665 (PF13276)
325240.Sbal_1119				PF01527	(ER)
325240.Sbal_4324				PF01695	(ER)
325240.Sbal_2492	+	(>)
325240.Sbal_2659				PF01527	(ER)
325240.Sbal_2650				PF01527	(ER)
325240.Sbal_3870				PF13936 PF00665
325240.Sbal_1142				PF01527	(mitochondrial)
325240.Sbal_2651				PF00665 (PF13276)
325240.Sbal_2476	+			(PF00849)
325240.Sbal_2271	(+)				(mitochondrial)
325240.Sbal_2875				PF01695	(ER)
325240.Sbal_2871				PF01695	(ER)
325240.Sbal_0656				PF00665 (PF13276)
325240.Sbal_0655				PF01527	(ER)
325240.Sbal_1925				PF01695	(ER)
325240.Sbal_1322				PF13936 PF00665
325240.Sbal_2153				PF13936 PF00665
325240.Sbal_2647				PF01695	(ER)
325240.Sbal_0849	+				(mitochondrial)
325240.Sbal_2005				PF01527	(ER)
325240.Sbal_2006				PF00665 (PF13276)
325240.Sbal_2009				PF01527	(ER)
325240.Sbal_2008				PF00665 (PF13276)
325240.Sbal_3517				PF01695	(ER)
325240.Sbal_3190				PF01527	(ER)
325240.Sbal_0644	(+)				ER
325240.Sbal_3739				PF13936 PF00665
325240.Sbal_0516	(+)				ER
325240.Sbal_1914		(>)			plastid
325240.Sbal_0599				PF01695	(ER)
325240.Sbal_2585				PF01527	(mitochondrial)
325240.Sbal_2109				PF13936 PF00665
325240.Sbal_2455	(+)				(mitochondrial)
325240.Sbal_2850				PF13936 PF00665
325240.Sbal_3212	(+)				mitochondrial
325240.Sbal_3210	+	+
325240.Sbal_3186				PF01695	(ER)
325240.Sbal_3450			+		(mitochondrial)
325240.Sbal_3189				PF00665 (PF13276)
325240.Sbal_1347				PF00665 (PF13276)
325240.Sbal_1160	+		+
325240.Sbal_2660				PF00665 (PF13276)
325240.Sbal_2667				PF01695	(ER)
325240.Sbal_2591	+				(plastid)
325240.Sbal_1929				PF01527	(ER)
325240.Sbal_1928				PF00665 (PF13276)
325240.Sbal_2849	+				(ER)
325240.Sbal_3221	+				(plastid)
325240.Sbal_2937	+				(mitochondrial)
325240.Sbal_0624				(PF08732)	(mitochondrial)
325240.Sbal_3714				PF01695	(ER)
325240.Sbal_1578				PF01695	(ER)
325240.Sbal_1571				PF13936 PF00665
325240.Sbal_1711				(PF00849)	(mitochondrial)
325240.Sbal_4291				PF00665 (PF13276)
325240.Sbal_1022				PF01695	(ER)
325240.Sbal_1664	+		+
325240.Sbal_2720				PF01695	(ER)
325240.Sbal_2542	(+)				(ER)
325240.Sbal_2545	(+)				(ER)
325240.Sbal_2949		(>)	+
325240.Sbal_3143				(PF13565) PF00665
325240.Sbal_3140				PF01695	(ER)
325240.Sbal_3522	(+)				ER
325240.Sbal_3525	+				ER
325240.Sbal_1569	+	(>)
325240.Sbal_0813				PF01695	(ER)
325240.Sbal_0818				(PF13565) PF00665
325240.Sbal_1384	+		+
325240.Sbal_1637				PF01695	(ER)
325240.Sbal_1634				PF13936 PF00665
325240.Sbal_3678	+				plastid
325240.Sbal_4040				PF13936 PF00665
325240.Sbal_2606	(+)				mitochondrial
325240.Sbal_2048				PF01527	(mitochondrial)
325240.Sbal_2045				PF01695	(ER)
325240.Sbal_2043				PF13936 PF00665
325240.Sbal_2138				PF13936 PF00665
325240.Sbal_2951	+				(plastid)
325240.Sbal_3555				PF13936 PF00665
325240.Sbal_3550				PF00665 (PF13276)
325240.Sbal_0604	(+)				(mitochondrial)
325240.Sbal_0777				PF01695	(ER)
325240.Sbal_0776		(>)			(mitochondrial)
325240.Sbal_1828				PF01695	(ER)
325240.Sbal_1049	(+)				ER
325240.Sbal_2094				PF01695	(ER)
325240.Sbal_2090				PF01527	(mitochondrial)
325240.Sbal_2388			+		(mitochondrial)
325240.Sbal_3948				PF13936 PF00665
325240.Sbal_2141				PF01695	(ER)
325240.Sbal_3945				PF01695	(ER)
325240.Sbal_0545		+			(plastid)
325240.Sbal_3168	+				(plastid)
325240.Sbal_3546				PF01527	(ER)
325240.Sbal_3544				PF01527	(mitochondrial)
325240.Sbal_3548				PF01695	(ER)
325240.Sbal_3764				PF01695	(ER)
325240.Sbal_3761	(+)				(ER)
325240.Sbal_1942				(PF13565) PF00665
325240.Sbal_1727				PF00665 (PF13276)
325240.Sbal_1728				PF01527	(ER)
325240.Sbal_2625				PF01527	(mitochondrial)
325240.Sbal_0570	+				(plastid)
325240.Sbal_3379	+				(mitochondrial)
325240.Sbal_2884		+			(mitochondrial)
325240.Sbal_3627				PF13936 PF00665
325240.Sbal_0133	+				(mitochondrial)
325240.Sbal_0132				PF00665 (PF13276)
325240.Sbal_0131				PF01527	(ER)
325240.Sbal_0130				(PF13565) PF00665
325240.Sbal_1288	+				(ER)
325240.Sbal_1283	+		+
325240.Sbal_1264				PF01527	(mitochondrial)
325240.Sbal_1266				PF13936 PF00665
325240.Sbal_1268				PF13936 PF00665
325240.Sbal_1067				PF01695	(ER)
325240.Sbal_1068	(+)				(ER)
325240.Sbal_2984			+		(ER)
325240.Sbal_1258				PF01527	(mitochondrial)
325240.Sbal_1392	+				(plastid)
325240.Sbal_4344				PF01695	(ER)
325240.Sbal_3960	(+)		+		(plastid)
325240.Sbal_3968	+				(plastid)
325240.Sbal_2181				PF01695	(ER)
325240.Sbal_0222	(+)				(ER)
325240.Sbal_3102	+		+
325240.Sbal_0923	(+)				ER; (ER)
325240.Sbal_3746				PF13936 PF00665
325240.Sbal_0725				PF00665 (PF13276)
325240.Sbal_0454				PF01527	(mitochondrial)
325240.Sbal_1074				PF01527	(ER)
325240.Sbal_1076				PF13936 PF00665
325240.Sbal_1073				PF00665 (PF13276)
325240.Sbal_4350				(PF13565) PF00665
325240.Sbal_2196	+		+
325240.Sbal_3824	+				(mitochondrial)
325240.Sbal_0101	(+)				ER
325240.Sbal_3132	+				(mitochondrial)
325240.Sbal_0730				(PF13565) PF00665
325240.Sbal_3642	(+)				(mitochondrial); (plastid)
325240.Sbal_0114	(+)				(ER)
325240.Sbal_1511				PF13936 PF00665
325240.Sbal_1860	+		+
325240.Sbal_4039				PF00665 (PF13276)
325240.Sbal_4381	+				(mitochondrial)
325240.Sbal_2842	(+)				(mitochondrial); plastid
325240.Sbal_0903	(+)				ER; (ER)
325240.Sbal_3010	+	+
325240.Sbal_1254				(PF13565) PF00665
325240.Sbal_1257				PF01695	(ER)
325240.Sbal_1096				PF01527	(mitochondrial)
325240.Sbal_2751	(+)				ER
325240.Sbal_2724	(+)				mitochondrial; (mitochondrial)
325240.Sbal_2687	+				(plastid)
325240.Sbal_2356	+				(mitochondrial)
325240.Sbal_4227	(+)				(mitochondrial); plastid
325240.Sbal_3332	(+)	+
325240.Sbal_2827	+
325240.Sbal_2826	+
325240.Sbal_3063				PF00665
325240.Sbal_3481	+
325240.Sbal_3486	+
325240.Sbal_1932				PF00665
325240.Sbal_0044	+
325240.Sbal_0866	+
325240.Sbal_1316	+
325240.Sbal_1400	+
325240.Sbal_1408			+
325240.Sbal_1794		(>)
325240.Sbal_1132	+
325240.Sbal_1139				PF00665
325240.Sbal_4307		+
325240.Sbal_3925		(<)
325240.Sbal_4112		+
325240.Sbal_2325	+
325240.Sbal_2323				PF00665
325240.Sbal_2328	+
325240.Sbal_3812	+
325240.Sbal_1333	+
325240.Sbal_2039			+
325240.Sbal_3795	(+)				(plastid)
325240.Sbal_0689	+
325240.Sbal_3520	+
325240.Sbal_3326	+
325240.Sbal_3324		(>)
325240.Sbal_3323	+
325240.Sbal_0678	+
325240.Sbal_0614			+
325240.Sbal_3079	+
325240.Sbal_3078	+
325240.Sbal_4061	+
325240.Sbal_0784	+
325240.Sbal_3676				PF01527
325240.Sbal_3673	+
325240.Sbal_3785		(<)
325240.Sbal_0070		(<)
325240.Sbal_0252				PF00665
325240.Sbal_1306			+
325240.Sbal_1305		(<)			not used
325240.Sbal_0323	+
325240.Sbal_1237	+
325240.Sbal_1233	+
325240.Sbal_1120	+
325240.Sbal_1126				PF00665
325240.Sbal_1124	+
325240.Sbal_0362		+
325240.Sbal_4318				PF00665
325240.Sbal_4311				PF00665
325240.Sbal_2334				PF00665
325240.Sbal_3351	+
325240.Sbal_3868			+
325240.Sbal_2029	(+)				(plastid)
325240.Sbal_2028	+
325240.Sbal_2021				PF00665
325240.Sbal_2024	+
325240.Sbal_2101	+
325240.Sbal_3268			+
325240.Sbal_2249	+
325240.Sbal_3313				PF01527
325240.Sbal_2805				PF00665
325240.Sbal_0669	+
325240.Sbal_0668		(<)
325240.Sbal_3445	+
325240.Sbal_3449	+
325240.Sbal_3683				PF00665
325240.Sbal_1422	+
325240.Sbal_1423	+
325240.Sbal_1934				PF01527
325240.Sbal_1206	+
325240.Sbal_1456	(+)				(plastid)
325240.Sbal_1113	+
325240.Sbal_4095	+
325240.Sbal_4096	+
325240.Sbal_1454	+
325240.Sbal_4326				PF00665
325240.Sbal_3439	+
325240.Sbal_2011			+
325240.Sbal_2470	+
325240.Sbal_3300	+
325240.Sbal_3303				(PF00849)
325240.Sbal_2874				PF00665
325240.Sbal_2870	+
325240.Sbal_2872				PF00665
325240.Sbal_2905		(<)
325240.Sbal_3057	+
325240.Sbal_3050	+
325240.Sbal_3053	+
325240.Sbal_2000	+
325240.Sbal_0502	+
325240.Sbal_0344	+
325240.Sbal_0345	+
325240.Sbal_1214	+
325240.Sbal_1693	+
325240.Sbal_4081	+
325240.Sbal_4333	+
325240.Sbal_4338			+
325240.Sbal_2317	+
325240.Sbal_2646				PF00665
325240.Sbal_2353		+
325240.Sbal_1472	+
325240.Sbal_3993	+
325240.Sbal_2261			+
325240.Sbal_2262	(+)				(plastid)
325240.Sbal_3518				PF00665
325240.Sbal_3513	(+)				ER; not used
325240.Sbal_3206			+
325240.Sbal_3208	+
325240.Sbal_2478	+
325240.Sbal_3197		+
325240.Sbal_2913		(>)
325240.Sbal_2277	+
325240.Sbal_0204		(<)
325240.Sbal_1597		(>)
325240.Sbal_0424				(PF00849)
325240.Sbal_1777	(+)				(plastid)
325240.Sbal_1775	+
325240.Sbal_1359		+
325240.Sbal_2674	+
325240.Sbal_2670	+
325240.Sbal_2586				PF00665
325240.Sbal_2108		(>)
325240.Sbal_3989	+
325240.Sbal_2459		(>)
325240.Sbal_2298		(<)
325240.Sbal_2295	+
325240.Sbal_2857	+
325240.Sbal_3187				PF00665
325240.Sbal_2924	+
325240.Sbal_2921	+
325240.Sbal_0743	+
325240.Sbal_0632	+
325240.Sbal_0988				(PF00849)
325240.Sbal_0295				(PF00849)
325240.Sbal_0560	+
325240.Sbal_0167	+
325240.Sbal_1769				PF01536
325240.Sbal_0360	+
325240.Sbal_0361	+
325240.Sbal_0365				(PF02732)
325240.Sbal_1761	(+)				(plastid)
325240.Sbal_0369	+
325240.Sbal_1345			+
325240.Sbal_1341	+
325240.Sbal_1348				PF01527
325240.Sbal_1010		(>)
325240.Sbal_1017				(PF00849)
325240.Sbal_4191			+
325240.Sbal_2669	+
325240.Sbal_2668				PF00665
325240.Sbal_2529	+
325240.Sbal_2597	+
325240.Sbal_2594		(>)
325240.Sbal_2599	+
325240.Sbal_2066		(>)
325240.Sbal_1927	(+)		+
325240.Sbal_2110			+
325240.Sbal_2280	(+)				(mitochondrial)
325240.Sbal_2286	+
325240.Sbal_3881	(+)			(PF00849)
325240.Sbal_4288		(<)
325240.Sbal_2934	+
325240.Sbal_1926				PF00665
325240.Sbal_3405	+
325240.Sbal_3087	+
325240.Sbal_3476	(+)		+
325240.Sbal_3713				PF00665
325240.Sbal_1579				PF00665
325240.Sbal_0192	(+)				(mitochondrial)
325240.Sbal_0170	+
325240.Sbal_0174	+
325240.Sbal_2253	+
325240.Sbal_1712		(<)
325240.Sbal_0284		+
325240.Sbal_4292				PF01527
325240.Sbal_4293				PF00665
325240.Sbal_4294	+
325240.Sbal_1621	+
325240.Sbal_1627			+
325240.Sbal_4056	+
325240.Sbal_1023				PF00665
325240.Sbal_1021	+
325240.Sbal_2434	+
325240.Sbal_3558	+
325240.Sbal_2544			+
325240.Sbal_2945	+
325240.Sbal_2946	(+)				(plastid)
325240.Sbal_3142	(+)			PF01527
325240.Sbal_3147	(+)				(mitochondrial)
325240.Sbal_3413	+
325240.Sbal_0765	+
325240.Sbal_0612	+
325240.Sbal_3477	(+)				(ER)
325240.Sbal_1561	+
325240.Sbal_1499	+
325240.Sbal_1496	+
325240.Sbal_0814				PF00665
325240.Sbal_0817	(+)			PF01527
325240.Sbal_1817	+
325240.Sbal_1816	+
325240.Sbal_1383	(+)			(PF09127)
325240.Sbal_1381				PF00665
325240.Sbal_4283	(+)				(mitochondrial)
325240.Sbal_1140		(>)
325240.Sbal_1143				PF00665
325240.Sbal_1638				PF00665
325240.Sbal_1555	+
325240.Sbal_4041			+
325240.Sbal_4046	+
325240.Sbal_1031		(>)
325240.Sbal_3782	+
325240.Sbal_3789				PF00665
325240.Sbal_2607	+
325240.Sbal_2600	+
325240.Sbal_4325				PF00665
325240.Sbal_1959	+
325240.Sbal_2047				PF00665
325240.Sbal_2046				PF00665
325240.Sbal_4014	(+)				(ER)
325240.Sbal_2427	+
325240.Sbal_2132	+
325240.Sbal_1704	+
325240.Sbal_3952	+
325240.Sbal_3955			+
325240.Sbal_3831	+
325240.Sbal_2958	+
325240.Sbal_2952			+
325240.Sbal_3557	+
325240.Sbal_0600				PF00665
325240.Sbal_3774	+
325240.Sbal_0771	+
325240.Sbal_0805	+
325240.Sbal_0778				PF00665
325240.Sbal_1952	+
325240.Sbal_1953	+
325240.Sbal_1950	+
325240.Sbal_1957	+
325240.Sbal_1954	+
325240.Sbal_3603	+
325240.Sbal_3606	+
325240.Sbal_1827				PF00665
325240.Sbal_0808	+
325240.Sbal_1823	+
325240.Sbal_2232			+
325240.Sbal_1040	+
325240.Sbal_2634	+
325240.Sbal_4258	+
325240.Sbal_3979	+
325240.Sbal_2704	+
325240.Sbal_2092	+
325240.Sbal_2093				PF00665
325240.Sbal_2091				PF00665
325240.Sbal_2382	+
325240.Sbal_2383	(+)				plastid
325240.Sbal_2142				PF00665
325240.Sbal_3944				PF00665
325240.Sbal_2561	+
325240.Sbal_2968	+
325240.Sbal_3165	+
325240.Sbal_3547				PF00665
325240.Sbal_3545				PF00665
325240.Sbal_3543			+
325240.Sbal_0942	+				not used
325240.Sbal_3765				PF00665
325240.Sbal_0963	+
325240.Sbal_0013	(+)		+
325240.Sbal_1800	+
325240.Sbal_1949	+
325240.Sbal_1941	(+)			PF01527
325240.Sbal_0129	(+)			PF01527
325240.Sbal_0837	+
325240.Sbal_1549	+
325240.Sbal_1833	+
325240.Sbal_3146			+
325240.Sbal_2165	+
325240.Sbal_2624				PF00665
325240.Sbal_0573	+
325240.Sbal_2719				PF00665
325240.Sbal_2085	+
325240.Sbal_2397		(>)
325240.Sbal_3366	+
325240.Sbal_2406	+
325240.Sbal_3973	+
325240.Sbal_3378	+
325240.Sbal_3371			+
325240.Sbal_2571			+
325240.Sbal_2573			+
325240.Sbal_2575		(<)
325240.Sbal_3286	+
325240.Sbal_3940	+
325240.Sbal_0957	+
325240.Sbal_3592			+
325240.Sbal_0485	+
325240.Sbal_0483	+
325240.Sbal_0134	(+)				plastid
325240.Sbal_1442				(PF00849)
325240.Sbal_1446	+
325240.Sbal_1532		+
325240.Sbal_0821	(+)	(<)
325240.Sbal_4016	+
325240.Sbal_1451			+
325240.Sbal_1199		(>)
325240.Sbal_1263				PF00665
325240.Sbal_1269	+
325240.Sbal_1066				PF00665
325240.Sbal_2214			+
325240.Sbal_4340			+
325240.Sbal_4343				PF00665
325240.Sbal_4346	(+)				(ER)
325240.Sbal_3961	+
325240.Sbal_3966	+
325240.Sbal_3969	(+)	+
325240.Sbal_4015	(+)				(ER)
325240.Sbal_2360	+
325240.Sbal_2366	(+)				(mitochondrial)
325240.Sbal_2186	(+)				(plastid)
325240.Sbal_3361	+
325240.Sbal_3364	+
325240.Sbal_2428			+
325240.Sbal_0920	+
325240.Sbal_1658	+
325240.Sbal_3031	(+)				(ER)
325240.Sbal_3749	+
325240.Sbal_0729	(+)			PF01527
325240.Sbal_0726				PF01527
325240.Sbal_3637	+
325240.Sbal_1989			+
325240.Sbal_0455				PF00665
325240.Sbal_0104	+
325240.Sbal_0459				PF01527
325240.Sbal_1450	(+)				(plastid)
325240.Sbal_1522	(+)				(plastid)
325240.Sbal_1855		(>)
325240.Sbal_0219	+
325240.Sbal_1670	+
325240.Sbal_1295	+
325240.Sbal_1272		+
325240.Sbal_1271	+
325240.Sbal_1275	+
325240.Sbal_1079	+
325240.Sbal_2791				(PF00849)
325240.Sbal_4133	+
325240.Sbal_4132			+
325240.Sbal_4229	+
325240.Sbal_4221		(>)
325240.Sbal_4351	(+)			PF01527
325240.Sbal_4357		+
325240.Sbal_4359				PF00665
325240.Sbal_0836	(+)				ER
325240.Sbal_4029		+
325240.Sbal_2511			+
325240.Sbal_0587	+
325240.Sbal_3822		(>)
325240.Sbal_2898	+
325240.Sbal_2995	+
325240.Sbal_0877	+
325240.Sbal_2891	+
325240.Sbal_0762	+
325240.Sbal_3005	(+)		+
325240.Sbal_0733				(PF00849)
325240.Sbal_2242			+
325240.Sbal_1517			+
325240.Sbal_1867			+
325240.Sbal_4038				PF01527
325240.Sbal_1249	+
325240.Sbal_1080	+
325240.Sbal_4036	(+)	+
325240.Sbal_2961		+
325240.Sbal_4216			+
325240.Sbal_2748	+
325240.Sbal_4367		(<)
325240.Sbal_3166	+
325240.Sbal_3935			+
325240.Sbal_2348	+
325240.Sbal_2347	+
325240.Sbal_2696				(PF00849)
325240.Sbal_3343			+
325240.Sbal_3349			+
325240.Sbal_3348			+
325240.Sbal_1077	+
325240.Sbal_2830	+
325240.Sbal_0697	+
325240.Sbal_3129	+
325240.Sbal_0056	+
325240.Sbal_1870	(+)				(mitochondrial)
325240.Sbal_4023	+
325240.Sbal_1471	+
325240.Sbal_1259				PF00665
325240.Sbal_1253	(+)			PF01527
325240.Sbal_1256				PF00665
325240.Sbal_1093			+
325240.Sbal_1091	+
325240.Sbal_1090	+
325240.Sbal_1097				PF00665
325240.Sbal_1656	+
325240.Sbal_3532	(+)	(>)
325240.Sbal_0370	+
325240.Sbal_3231	+
325240.Sbal_3980			+
325240.Sbal_1092	+
325240.Sbal_2122	+
325240.Sbal_3937	+
325240.Sbal_0768	(+)				(ER)
325240.Sbal_2355	+
325240.Sbal_2357			+
325240.Sbal_3804	+
325240.Sbal_0530			+
325240.Sbal_3333	(+)
325240.Sbal_0919	(+)
325240.Sbal_3482	(+)
325240.Sbal_3466	(+)
325240.Sbal_0042	(+)
325240.Sbal_0041	(+)
325240.Sbal_0040	(+)
325240.Sbal_1312	(+)
325240.Sbal_1317	(+)
325240.Sbal_1795	(+)
325240.Sbal_0312	(+)
325240.Sbal_1094	(+)
325240.Sbal_0820	(+)
325240.Sbal_4309	(+)				not used
325240.Sbal_4301	(+)
325240.Sbal_3414	(+)
325240.Sbal_3068	(+)
325240.Sbal_3069	(+)
325240.Sbal_3818	(+)
325240.Sbal_0682	(+)
325240.Sbal_2038	(+)
325240.Sbal_2035	(+)
325240.Sbal_2036	(+)
325240.Sbal_3259	(+)
325240.Sbal_3322	(+)
325240.Sbal_3529	(+)
325240.Sbal_0787	(+)
325240.Sbal_1427	(+)
325240.Sbal_0321	(+)
325240.Sbal_1234	(+)
325240.Sbal_3662	(+)
325240.Sbal_2335	(+)
325240.Sbal_2023	(+)
325240.Sbal_2515	(+)
325240.Sbal_3264	(+)
325240.Sbal_0140	(+)
325240.Sbal_3438	(+)
325240.Sbal_3689	(+)
325240.Sbal_0061	(+)
325240.Sbal_0063	(+)
325240.Sbal_0339	(+)
325240.Sbal_1751	(+)
325240.Sbal_1117	(+)
325240.Sbal_4090	(+)
325240.Sbal_4164	(+)
325240.Sbal_2477	(+)
325240.Sbal_2274	(+)
325240.Sbal_3452	(+)
325240.Sbal_3054	(+)
325240.Sbal_0501	(+)				not used
325240.Sbal_1216	(+)
325240.Sbal_1320	(+)
325240.Sbal_1692	(+)
325240.Sbal_3528	(+)
325240.Sbal_4337	(+)
325240.Sbal_4330	(+)
325240.Sbal_0845	(+)
325240.Sbal_3510	(+)
325240.Sbal_3203	(+)
325240.Sbal_3731	(+)
325240.Sbal_1595	(+)
325240.Sbal_0510	(+)
325240.Sbal_0427	(+)
325240.Sbal_1779	(+)
325240.Sbal_1355	(+)
325240.Sbal_1357	+
325240.Sbal_1351	(+)
325240.Sbal_4005	(+)
325240.Sbal_2855	(+)
325240.Sbal_3503	(+)
325240.Sbal_3219	(+)
325240.Sbal_2923	(+)
325240.Sbal_3437	(+)
325240.Sbal_2929	(+)
325240.Sbal_0638	(+)
325240.Sbal_3721	(+)
325240.Sbal_3725	(+)
325240.Sbal_3728	(+)
325240.Sbal_1584	(+)
325240.Sbal_0185	(+)
325240.Sbal_1901	(+)
325240.Sbal_1902	(+)
325240.Sbal_1498	(+)
325240.Sbal_2663	(+)
325240.Sbal_1996	(+)
325240.Sbal_2285	(+)
325240.Sbal_0757	(+)
325240.Sbal_1972	(+)
325240.Sbal_4050	(+)
325240.Sbal_1662	(+)
325240.Sbal_2611	(+)
325240.Sbal_2619	(+)
325240.Sbal_4272	(+)
325240.Sbal_4278	(+)
325240.Sbal_3074	(+)
325240.Sbal_2058	(+)
325240.Sbal_3556	(+)
325240.Sbal_2547	(+)
325240.Sbal_2942	(+)
325240.Sbal_0615	(+)
325240.Sbal_3096	(+)
325240.Sbal_1963	(+)
325240.Sbal_1961	(+)
325240.Sbal_0816	(+)
325240.Sbal_1382	(+)
325240.Sbal_1144	(+)
325240.Sbal_0175	(+)
325240.Sbal_4269	(+)
325240.Sbal_1707	(+)
325240.Sbal_2429	(+)
325240.Sbal_3950	(+)
325240.Sbal_2554	(+)
325240.Sbal_0977	(+)
325240.Sbal_3779	(+)
325240.Sbal_0539	(+)
325240.Sbal_2730	(+)
325240.Sbal_0153	(+)
325240.Sbal_2486	(+)
325240.Sbal_1730	(+)
325240.Sbal_0542	(+)
325240.Sbal_4254	(+)
325240.Sbal_4259	(+)
325240.Sbal_2703	(+)
325240.Sbal_2700	(+)
325240.Sbal_2534	(+)
325240.Sbal_2564	(+)
325240.Sbal_0949	(+)
325240.Sbal_0946	(+)
325240.Sbal_0940	(+)
325240.Sbal_3611	(+)
325240.Sbal_0965	(+)
325240.Sbal_1837	(+)
325240.Sbal_3145	(+)
325240.Sbal_1725	(+)
325240.Sbal_2137	(+)
325240.Sbal_1056	(+)
325240.Sbal_1768	(+)
325240.Sbal_0477	(+)
325240.Sbal_2717	(+)
325240.Sbal_4289	(+)
325240.Sbal_3284	(+)
325240.Sbal_3281	(+)
325240.Sbal_3283	(+)
325240.Sbal_1762	(+)
325240.Sbal_2972	(+)
325240.Sbal_0001	(+)
325240.Sbal_0484	(+)
325240.Sbal_0488	(+)
325240.Sbal_0137	(+)
325240.Sbal_1440	(+)
325240.Sbal_1538	(+)
325240.Sbal_1841	(+)
325240.Sbal_1849	(+)
325240.Sbal_0228	(+)
325240.Sbal_0538	(+)
325240.Sbal_1540	(+)
325240.Sbal_2985	(+)
325240.Sbal_2219	(+)
325240.Sbal_2764	(+)
325240.Sbal_2166	(+)
325240.Sbal_4156	(+)
325240.Sbal_3589	(+)
325240.Sbal_3033	(+)
325240.Sbal_3039	(+)
325240.Sbal_0105	(+)
325240.Sbal_0583	(+)
325240.Sbal_1636	(+)
325240.Sbal_1671	(+)
325240.Sbal_1290	(+)
325240.Sbal_1270	(+)
325240.Sbal_1071	(+)
325240.Sbal_3234	(+)
325240.Sbal_2385	(+)
325240.Sbal_4131	(+)
325240.Sbal_2412	(+)
325240.Sbal_2418	(+)
325240.Sbal_2377	(+)
325240.Sbal_2193	(+)
325240.Sbal_1918	(+)
325240.Sbal_2206	(+)
325240.Sbal_2209	(+)
325240.Sbal_3006	(+)
325240.Sbal_3130	(+)
325240.Sbal_3137	(+)
325240.Sbal_0110	(+)
325240.Sbal_0025	(+)
325240.Sbal_1513	+
325240.Sbal_2403	(+)
325240.Sbal_1700	(+)
325240.Sbal_0945	(+)
325240.Sbal_1157	(+)
325240.Sbal_3833	(+)
325240.Sbal_0900	(+)
325240.Sbal_3125	(+)
325240.Sbal_3766	(+)
325240.Sbal_1426	(+)
325240.Sbal_3653	(+)
325240.Sbal_0875	(+)
325240.Sbal_1874	(+)
325240.Sbal_1871	(+)
325240.Sbal_1474	(+)
325240.Sbal_1654	(+)
325240.Sbal_3742	(+)
325240.Sbal_2756	(+)
325240.Sbal_2752	(+)
325240.Sbal_2126	(+)
325240.Sbal_2689	(+)
325240.Sbal_2359	(+)
325240.Sbal_3802	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.7 (17/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.0 (0/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 0.875 (7/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================