Metamenu

Effective results for Synechococcus sp. WH 7803 (eggnog40)

Summary

Number of putative secreted proteins: 132
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 101 eukaryotic-like domains, contained in 132 proteins (9 high, 123 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
32051.SynWH7803_1851(PF16639) (PF01333)ER
32051.SynWH7803_2390PF05019(ER)
32051.SynWH7803_0481(PF05996)(mitochondrial); (plastid)
32051.SynWH7803_1844(PF02507)ER
32051.SynWH7803_1524(PF01789)ER
32051.SynWH7803_2516(PF16166)ER
32051.SynWH7803_2203(PF06514)ER
32051.SynWH7803_0731(PF11460)ER
32051.SynWH7803_0730(PF10716)(ER)
32051.SynWH7803_0598(PF13301)ER
32051.SynWH7803_0478(PF06206)(mitochondrial)
32051.SynWH7803_0309(PF12600)ER
32051.SynWH7803_2351(PF00162)(mitochondrial)
32051.SynWH7803_0463(PF12046)ER
32051.SynWH7803_1225(PF12159)ER
32051.SynWH7803_0077(PF04481)mitochondrial
32051.SynWH7803_1126(PF11152)ER
32051.SynWH7803_0294(PF13301)ER
32051.SynWH7803_0087(PF01737)ER
32051.SynWH7803_0336(PF07444)ER
32051.SynWH7803_2012(PF11805)ER; (ER)
32051.SynWH7803_0435(PF11909)(mitochondrial)
32051.SynWH7803_1213(PF11264)(mitochondrial)
32051.SynWH7803_0353(PF01716)ER
32051.SynWH7803_0562(PF13301)ER
32051.SynWH7803_1161(PF12452)(ER)
32051.SynWH7803_0621(PF13326)ER
32051.SynWH7803_2131(PF07444)ER; (ER)
32051.SynWH7803_0153(PF00140)(mitochondrial); plastid
32051.SynWH7803_1733(PF13355)(ER)
32051.SynWH7803_1041(PF07082)(mitochondrial)
32051.SynWH7803_2501(PF00140)(plastid)
32051.SynWH7803_0202(PF11623)(plastid)
32051.SynWH7803_1642PF02005(ER)
32051.SynWH7803_0312(PF02468)ER; not used
32051.SynWH7803_1307PF05019(mitochondrial)
32051.SynWH7803_1338(PF11347)plastid
32051.SynWH7803_0249(PF00284) (PF00283)
32051.SynWH7803_0248(PF00283)(ER); not used
32051.SynWH7803_1113(PF04483)(mitochondrial)
32051.SynWH7803_0346(PF04483)(mitochondrial)
32051.SynWH7803_0287(PF02533)(ER); not used
32051.SynWH7803_0615(PF11016)(ER)
32051.SynWH7803_0611(PF00140)(plastid)
32051.SynWH7803_1383(PF06298)ER; not used
32051.SynWH7803_2130(PF06596)ER; not used
32051.SynWH7803_2090(PF10063)
32051.SynWH7803_0498(PF06206)
32051.SynWH7803_1947(PF08855)
32051.SynWH7803_1612PF05019
32051.SynWH7803_2084(PF00124)
32051.SynWH7803_0482(PF05996)
32051.SynWH7803_1993(PF02941)
32051.SynWH7803_0823(PF00504)
32051.SynWH7803_1845(PF01701)not used
32051.SynWH7803_1849(PF11267)
32051.SynWH7803_1264(PF09353)
32051.SynWH7803_1068(PF11947)
32051.SynWH7803_2214(PF12095)
32051.SynWH7803_2217(PF05421)
32051.SynWH7803_0457(PF02531)
32051.SynWH7803_2191(PF00504)not used
32051.SynWH7803_0931(PF00504)
32051.SynWH7803_0937(PF00504)
32051.SynWH7803_0938(PF12204)
32051.SynWH7803_0247PF02419not used
32051.SynWH7803_0246(PF01788)
32051.SynWH7803_0446(PF14159)
32051.SynWH7803_0441(PF10999)
32051.SynWH7803_0118(PF03016)
32051.SynWH7803_1544(PF00140)
32051.SynWH7803_1248(PF11360)
32051.SynWH7803_1646(PF02392)
32051.SynWH7803_1647(PF00124)
32051.SynWH7803_1641(PF08041)not used
32051.SynWH7803_2231(PF11910)
32051.SynWH7803_2239(PF00124)
32051.SynWH7803_0276(PF03492)
32051.SynWH7803_0301(PF11378)
32051.SynWH7803_2357(PF00162)
32051.SynWH7803_2459(PF00140)
32051.SynWH7803_0313(PF00737)
32051.SynWH7803_0310(PF02532)not used
32051.SynWH7803_0812(PF08417)
32051.SynWH7803_1364(PF11282)
32051.SynWH7803_1226(PF10693)
32051.SynWH7803_0784(PF00124)
32051.SynWH7803_0785PF05019
32051.SynWH7803_1304PF05019
32051.SynWH7803_1123(PF03040)
32051.SynWH7803_2151(PF02943)
32051.SynWH7803_1335(PF05996)
32051.SynWH7803_0666(PF08847)
32051.SynWH7803_0790(PF00124)
32051.SynWH7803_0069PF05019
32051.SynWH7803_0536(PF12899)
32051.SynWH7803_1426(PF06799)
32051.SynWH7803_1933(PF11317)
32051.SynWH7803_2274(PF10664)
32051.SynWH7803_2275(PF11371)
32051.SynWH7803_0436(PF12617)
32051.SynWH7803_1211PF03742not used
32051.SynWH7803_1103(PF11210)
32051.SynWH7803_2002(PF04839)
32051.SynWH7803_1595(PF02529)not used
32051.SynWH7803_1590(PF14159)
32051.SynWH7803_0517(PF01405)not used
32051.SynWH7803_0742(PF00140)
32051.SynWH7803_0566(PF08853)
32051.SynWH7803_0295(PF09366)
32051.SynWH7803_0366(PF00124)
32051.SynWH7803_2061(PF04983)
32051.SynWH7803_2060(PF04983)
32051.SynWH7803_0520(PF05151)not used
32051.SynWH7803_1488(PF12049)
32051.SynWH7803_0374(PF09366)
32051.SynWH7803_1370(PF10674)
32051.SynWH7803_1393(PF01744)
32051.SynWH7803_1156(PF12527)
32051.SynWH7803_1491(PF11833)
32051.SynWH7803_0816(PF13911)
32051.SynWH7803_0540(PF02427)
32051.SynWH7803_2049(PF11341)
32051.SynWH7803_2422(PF01947)
32051.SynWH7803_2134(PF00504)
32051.SynWH7803_0975(PF10013)not used
32051.SynWH7803_0775(PF08854)
32051.SynWH7803_0397(PF00796)not used
32051.SynWH7803_0396(PF02605)
32051.SynWH7803_0392(PF00223)
32051.SynWH7803_0391(PF00223)
32051.SynWH7803_1736(PF00140)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================