Effective results for Escherichia coli str. K-12 substr. DH10B (eggnog40)

Summary

Number of putative secreted proteins: 177
- Predicted by T4SEpre: 86
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 98 proteins (3 high, 95 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
316385.ECDH10B_3681(PF05598) (PF01609)mitochondrial
316385.ECDH10B_0617(PF05598) (PF01609)mitochondrial
316385.ECDH10B_3159(PF05598) (PF01609)mitochondrial
316385.ECDH10B_2180(PF05598) (PF01609)mitochondrial
316385.ECDH10B_2349(PF05598) (PF01609)mitochondrial
316385.ECDH10B_0245(PF05598) (PF01609)mitochondrial
316385.ECDH10B_0725(PF05598) (PF01609)mitochondrial
316385.ECDH10B_1451(PF05598) (PF01609)mitochondrial
316385.ECDH10B_3394(PF05598) (PF01609)mitochondrial
316385.ECDH10B_0510(PF05598) (PF01609)mitochondrial
316385.ECDH10B_2672+ER
316385.ECDH10B_3506+ER
316385.ECDH10B_4086+ER
316385.ECDH10B_1582+(mitochondrial)
316385.ECDH10B_2333+(ER); ER
316385.ECDH10B_1686(PF00959)ER
316385.ECDH10B_0785(PF00577)ER
316385.ECDH10B_3209+ER
316385.ECDH10B_2134+ER
316385.ECDH10B_2626(PF10662)(mitochondrial)
316385.ECDH10B_4126(PF05708)ER
316385.ECDH10B_3334(PF03222)(ER); ER
316385.ECDH10B_4139(PF01228)(mitochondrial)
316385.ECDH10B_1549+ER
316385.ECDH10B_3317(PF00577)(ER)
316385.ECDH10B_2138(PF05598) (PF01609)mitochondrial
316385.ECDH10B_1158+(mitochondrial)
316385.ECDH10B_0446+ER
316385.ECDH10B_2722+(ER)
316385.ECDH10B_1449+ER
316385.ECDH10B_3367+ER
316385.ECDH10B_2500(PF00577)ER
316385.ECDH10B_3349+ER
316385.ECDH10B_4370+ER
316385.ECDH10B_1050(PF00328)ER
316385.ECDH10B_4028+ER
316385.ECDH10B_1875+ER; (ER)
316385.ECDH10B_3751+ER
316385.ECDH10B_1601+ER; (ER)
316385.ECDH10B_0807+ER
316385.ECDH10B_3613+mitochondrial; (mitochondrial)
316385.ECDH10B_1074(PF00328)ER
316385.ECDH10B_1250(PF01204)ER
316385.ECDH10B_3622+ER
316385.ECDH10B_2392(PF02415)ER; (ER)
316385.ECDH10B_2262(PF00577)ER
316385.ECDH10B_3255(PF01204)ER
316385.ECDH10B_0526(PF13429)(ER)
316385.ECDH10B_0634(PF13429)(ER)
316385.ECDH10B_2660+ER
316385.ECDH10B_3391(PF00577)ER
316385.ECDH10B_2048(PF03222)ER; (ER)
316385.ECDH10B_1223(PF13436)(ER)
316385.ECDH10B_1737+ER
316385.ECDH10B_3896(PF03222)(ER)
316385.ECDH10B_0174(PF05708)ER
316385.ECDH10B_3472+(mitochondrial)
316385.ECDH10B_1100(PF13276)(mitochondrial)
316385.ECDH10B_2030+(mitochondrial)
316385.ECDH10B_2836+(mitochondrial)
316385.ECDH10B_2548(PF05524)(mitochondrial)
316385.ECDH10B_0329(PF13276)(mitochondrial)
316385.ECDH10B_3017(PF03222)(ER)
316385.ECDH10B_0497(PF13276)(mitochondrial)
316385.ECDH10B_3750+(mitochondrial)
316385.ECDH10B_2243(PF13276)(mitochondrial)
316385.ECDH10B_1492(PF05598) (PF01609)
316385.ECDH10B_0288(PF13276)(mitochondrial)
316385.ECDH10B_0620(PF00959)(ER)
316385.ECDH10B_0512(PF00959)(ER)
316385.ECDH10B_3508+
316385.ECDH10B_4466(PF13276)
316385.ECDH10B_0181+
316385.ECDH10B_4512+
316385.ECDH10B_4502(PF00834)
316385.ECDH10B_4473(PF01609)
316385.ECDH10B_0649(PF01609)
316385.ECDH10B_1591(PF01609)
316385.ECDH10B_4259+
316385.ECDH10B_4136(PF05524)
316385.ECDH10B_0973(PF01228)
316385.ECDH10B_0089+
316385.ECDH10B_3219(PF13276)
316385.ECDH10B_3212(PF03738)
316385.ECDH10B_3696(PF01204)
316385.ECDH10B_2581(PF05524)
316385.ECDH10B_2929+
316385.ECDH10B_1160+
316385.ECDH10B_0143+
316385.ECDH10B_3065+
316385.ECDH10B_0892(PF01228)
316385.ECDH10B_3195+
316385.ECDH10B_2131+
316385.ECDH10B_2558(PF01609)
316385.ECDH10B_3920+
316385.ECDH10B_1312+
316385.ECDH10B_0317(PF13276)
316385.ECDH10B_1793+
316385.ECDH10B_1406+
316385.ECDH10B_3301+
316385.ECDH10B_2499(PF00577)
316385.ECDH10B_2003(PF05708)
316385.ECDH10B_0541(PF01609)
316385.ECDH10B_0433+
316385.ECDH10B_2797+
316385.ECDH10B_3220(PF00577)
316385.ECDH10B_2153(PF10662)
316385.ECDH10B_2974+
316385.ECDH10B_2375+
316385.ECDH10B_4100+
316385.ECDH10B_1339(PF00959)
316385.ECDH10B_0598(PF02410)
316385.ECDH10B_0119(PF00577)
316385.ECDH10B_3034(PF13276)
316385.ECDH10B_3748+
316385.ECDH10B_3561(PF00834)
316385.ECDH10B_3562+
316385.ECDH10B_2141(PF13276)
316385.ECDH10B_1528(PF13276)
316385.ECDH10B_3023(PF07720)
316385.ECDH10B_3807(PF06176)
316385.ECDH10B_3800PF09612
316385.ECDH10B_2775+
316385.ECDH10B_2170+
316385.ECDH10B_2999(PF05524)
316385.ECDH10B_2726+
316385.ECDH10B_1709+
316385.ECDH10B_0262(PF03400)
316385.ECDH10B_0865+
316385.ECDH10B_0462+
316385.ECDH10B_0482+
316385.ECDH10B_0488(PF00577)
316385.ECDH10B_0711(PF13603)
316385.ECDH10B_3165(PF03738)
316385.ECDH10B_1179+
316385.ECDH10B_3015+
316385.ECDH10B_2766+
316385.ECDH10B_2431(PF02902)
316385.ECDH10B_4485+
316385.ECDH10B_1059(PF03400)
316385.ECDH10B_1473PF04181not used
316385.ECDH10B_1477PF14555not used
316385.ECDH10B_0706(PF02410)
316385.ECDH10B_1321+
316385.ECDH10B_3594(PF05189)
316385.ECDH10B_3357+
316385.ECDH10B_4369+
316385.ECDH10B_4380+
316385.ECDH10B_4381(PF03738)
316385.ECDH10B_0276+
316385.ECDH10B_0022(PF03400)
316385.ECDH10B_3619(PF03400)
316385.ECDH10B_4387+
316385.ECDH10B_3290(PF03222)
316385.ECDH10B_1970+
316385.ECDH10B_2747(PF01228)
316385.ECDH10B_0016(PF01609)
316385.ECDH10B_1073+
316385.ECDH10B_1251(PF05524)
316385.ECDH10B_1702+
316385.ECDH10B_0250(PF03400)
316385.ECDH10B_0038+
316385.ECDH10B_3288(PF01228)
316385.ECDH10B_3738(PF13276)
316385.ECDH10B_3423+
316385.ECDH10B_1241+
316385.ECDH10B_4056+
316385.ECDH10B_4004+
316385.ECDH10B_1010(PF00577)
316385.ECDH10B_1019+
316385.ECDH10B_3243+
316385.ECDH10B_3718(PF03222)
316385.ECDH10B_4276(PF00834)
316385.ECDH10B_0603(PF13603)
316385.ECDH10B_0773(PF01609)
316385.ECDH10B_1327+
316385.ECDH10B_3659(PF01609)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: YES (FDR = 7.7 %)
    Estimated copy number = 0.375 (3/8 KEGG proteins)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================