Effective results for Escherichia coli str. K-12 substr. DH10B (eggnog40)
Summary
Number of putative secreted proteins: 177
- Predicted by T4SEpre: 86
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 98 proteins (3 high, 95 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV), (Type VI)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
---|---|---|---|---|---|
316385.ECDH10B_3681 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_0617 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_3159 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_2180 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_2349 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_0245 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_0725 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_1451 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_3394 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_0510 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_2672 | + | ER | |||
316385.ECDH10B_3506 | + | ER | |||
316385.ECDH10B_4086 | + | ER | |||
316385.ECDH10B_1582 | + | (mitochondrial) | |||
316385.ECDH10B_2333 | + | (ER); ER | |||
316385.ECDH10B_1686 | (PF00959) | ER | |||
316385.ECDH10B_0785 | (PF00577) | ER | |||
316385.ECDH10B_3209 | + | ER | |||
316385.ECDH10B_2134 | + | ER | |||
316385.ECDH10B_2626 | (PF10662) | (mitochondrial) | |||
316385.ECDH10B_4126 | (PF05708) | ER | |||
316385.ECDH10B_3334 | (PF03222) | (ER); ER | |||
316385.ECDH10B_4139 | (PF01228) | (mitochondrial) | |||
316385.ECDH10B_1549 | + | ER | |||
316385.ECDH10B_3317 | (PF00577) | (ER) | |||
316385.ECDH10B_2138 | (PF05598) (PF01609) | mitochondrial | |||
316385.ECDH10B_1158 | + | (mitochondrial) | |||
316385.ECDH10B_0446 | + | ER | |||
316385.ECDH10B_2722 | + | (ER) | |||
316385.ECDH10B_1449 | + | ER | |||
316385.ECDH10B_3367 | + | ER | |||
316385.ECDH10B_2500 | (PF00577) | ER | |||
316385.ECDH10B_3349 | + | ER | |||
316385.ECDH10B_4370 | + | ER | |||
316385.ECDH10B_1050 | (PF00328) | ER | |||
316385.ECDH10B_4028 | + | ER | |||
316385.ECDH10B_1875 | + | ER; (ER) | |||
316385.ECDH10B_3751 | + | ER | |||
316385.ECDH10B_1601 | + | ER; (ER) | |||
316385.ECDH10B_0807 | + | ER | |||
316385.ECDH10B_3613 | + | mitochondrial; (mitochondrial) | |||
316385.ECDH10B_1074 | (PF00328) | ER | |||
316385.ECDH10B_1250 | (PF01204) | ER | |||
316385.ECDH10B_3622 | + | ER | |||
316385.ECDH10B_2392 | (PF02415) | ER; (ER) | |||
316385.ECDH10B_2262 | (PF00577) | ER | |||
316385.ECDH10B_3255 | (PF01204) | ER | |||
316385.ECDH10B_0526 | (PF13429) | (ER) | |||
316385.ECDH10B_0634 | (PF13429) | (ER) | |||
316385.ECDH10B_2660 | + | ER | |||
316385.ECDH10B_3391 | (PF00577) | ER | |||
316385.ECDH10B_2048 | (PF03222) | ER; (ER) | |||
316385.ECDH10B_1223 | (PF13436) | (ER) | |||
316385.ECDH10B_1737 | + | ER | |||
316385.ECDH10B_3896 | (PF03222) | (ER) | |||
316385.ECDH10B_0174 | (PF05708) | ER | |||
316385.ECDH10B_3472 | + | (mitochondrial) | |||
316385.ECDH10B_1100 | (PF13276) | (mitochondrial) | |||
316385.ECDH10B_2030 | + | (mitochondrial) | |||
316385.ECDH10B_2836 | + | (mitochondrial) | |||
316385.ECDH10B_2548 | (PF05524) | (mitochondrial) | |||
316385.ECDH10B_0329 | (PF13276) | (mitochondrial) | |||
316385.ECDH10B_3017 | (PF03222) | (ER) | |||
316385.ECDH10B_0497 | (PF13276) | (mitochondrial) | |||
316385.ECDH10B_3750 | + | (mitochondrial) | |||
316385.ECDH10B_2243 | (PF13276) | (mitochondrial) | |||
316385.ECDH10B_1492 | (PF05598) (PF01609) | ||||
316385.ECDH10B_0288 | (PF13276) | (mitochondrial) | |||
316385.ECDH10B_0620 | (PF00959) | (ER) | |||
316385.ECDH10B_0512 | (PF00959) | (ER) | |||
316385.ECDH10B_3508 | + | ||||
316385.ECDH10B_4466 | (PF13276) | ||||
316385.ECDH10B_0181 | + | ||||
316385.ECDH10B_4512 | + | ||||
316385.ECDH10B_4502 | (PF00834) | ||||
316385.ECDH10B_4473 | (PF01609) | ||||
316385.ECDH10B_0649 | (PF01609) | ||||
316385.ECDH10B_1591 | (PF01609) | ||||
316385.ECDH10B_4259 | + | ||||
316385.ECDH10B_4136 | (PF05524) | ||||
316385.ECDH10B_0973 | (PF01228) | ||||
316385.ECDH10B_0089 | + | ||||
316385.ECDH10B_3219 | (PF13276) | ||||
316385.ECDH10B_3212 | (PF03738) | ||||
316385.ECDH10B_3696 | (PF01204) | ||||
316385.ECDH10B_2581 | (PF05524) | ||||
316385.ECDH10B_2929 | + | ||||
316385.ECDH10B_1160 | + | ||||
316385.ECDH10B_0143 | + | ||||
316385.ECDH10B_3065 | + | ||||
316385.ECDH10B_0892 | (PF01228) | ||||
316385.ECDH10B_3195 | + | ||||
316385.ECDH10B_2131 | + | ||||
316385.ECDH10B_2558 | (PF01609) | ||||
316385.ECDH10B_3920 | + | ||||
316385.ECDH10B_1312 | + | ||||
316385.ECDH10B_0317 | (PF13276) | ||||
316385.ECDH10B_1793 | + | ||||
316385.ECDH10B_1406 | + | ||||
316385.ECDH10B_3301 | + | ||||
316385.ECDH10B_2499 | (PF00577) | ||||
316385.ECDH10B_2003 | (PF05708) | ||||
316385.ECDH10B_0541 | (PF01609) | ||||
316385.ECDH10B_0433 | + | ||||
316385.ECDH10B_2797 | + | ||||
316385.ECDH10B_3220 | (PF00577) | ||||
316385.ECDH10B_2153 | (PF10662) | ||||
316385.ECDH10B_2974 | + | ||||
316385.ECDH10B_2375 | + | ||||
316385.ECDH10B_4100 | + | ||||
316385.ECDH10B_1339 | (PF00959) | ||||
316385.ECDH10B_0598 | (PF02410) | ||||
316385.ECDH10B_0119 | (PF00577) | ||||
316385.ECDH10B_3034 | (PF13276) | ||||
316385.ECDH10B_3748 | + | ||||
316385.ECDH10B_3561 | (PF00834) | ||||
316385.ECDH10B_3562 | + | ||||
316385.ECDH10B_2141 | (PF13276) | ||||
316385.ECDH10B_1528 | (PF13276) | ||||
316385.ECDH10B_3023 | (PF07720) | ||||
316385.ECDH10B_3807 | (PF06176) | ||||
316385.ECDH10B_3800 | PF09612 | ||||
316385.ECDH10B_2775 | + | ||||
316385.ECDH10B_2170 | + | ||||
316385.ECDH10B_2999 | (PF05524) | ||||
316385.ECDH10B_2726 | + | ||||
316385.ECDH10B_1709 | + | ||||
316385.ECDH10B_0262 | (PF03400) | ||||
316385.ECDH10B_0865 | + | ||||
316385.ECDH10B_0462 | + | ||||
316385.ECDH10B_0482 | + | ||||
316385.ECDH10B_0488 | (PF00577) | ||||
316385.ECDH10B_0711 | (PF13603) | ||||
316385.ECDH10B_3165 | (PF03738) | ||||
316385.ECDH10B_1179 | + | ||||
316385.ECDH10B_3015 | + | ||||
316385.ECDH10B_2766 | + | ||||
316385.ECDH10B_2431 | (PF02902) | ||||
316385.ECDH10B_4485 | + | ||||
316385.ECDH10B_1059 | (PF03400) | ||||
316385.ECDH10B_1473 | PF04181 | not used | |||
316385.ECDH10B_1477 | PF14555 | not used | |||
316385.ECDH10B_0706 | (PF02410) | ||||
316385.ECDH10B_1321 | + | ||||
316385.ECDH10B_3594 | (PF05189) | ||||
316385.ECDH10B_3357 | + | ||||
316385.ECDH10B_4369 | + | ||||
316385.ECDH10B_4380 | + | ||||
316385.ECDH10B_4381 | (PF03738) | ||||
316385.ECDH10B_0276 | + | ||||
316385.ECDH10B_0022 | (PF03400) | ||||
316385.ECDH10B_3619 | (PF03400) | ||||
316385.ECDH10B_4387 | + | ||||
316385.ECDH10B_3290 | (PF03222) | ||||
316385.ECDH10B_1970 | + | ||||
316385.ECDH10B_2747 | (PF01228) | ||||
316385.ECDH10B_0016 | (PF01609) | ||||
316385.ECDH10B_1073 | + | ||||
316385.ECDH10B_1251 | (PF05524) | ||||
316385.ECDH10B_1702 | + | ||||
316385.ECDH10B_0250 | (PF03400) | ||||
316385.ECDH10B_0038 | + | ||||
316385.ECDH10B_3288 | (PF01228) | ||||
316385.ECDH10B_3738 | (PF13276) | ||||
316385.ECDH10B_3423 | + | ||||
316385.ECDH10B_1241 | + | ||||
316385.ECDH10B_4056 | + | ||||
316385.ECDH10B_4004 | + | ||||
316385.ECDH10B_1010 | (PF00577) | ||||
316385.ECDH10B_1019 | + | ||||
316385.ECDH10B_3243 | + | ||||
316385.ECDH10B_3718 | (PF03222) | ||||
316385.ECDH10B_4276 | (PF00834) | ||||
316385.ECDH10B_0603 | (PF13603) | ||||
316385.ECDH10B_0773 | (PF01609) | ||||
316385.ECDH10B_1327 | + | ||||
316385.ECDH10B_3659 | (PF01609) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: YES (FDR = 7.7 %)
Estimated copy number = 0.375 (3/8 KEGG proteins)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 0.0 (0/10 KEGG proteins)
Estimated copy number = 0.375 (3/8 KEGG proteins)