Effective results for Xanthomonas campestris pv. vesicatoria str. 85-10 (eggnog40)

Summary

Number of putative secreted proteins: 779
- Predicted by EffectiveT3: 217 (high confidence), 325 (low confidence)
- Predicted by EffectiveCCBD: 9 within, 12 before, 25 behind expected region 25..70aa
- Predicted by T4SEpre: 77
- Predicted by EffectiveELD: 36 eukaryotic-like domains, contained in 150 proteins (91 high, 59 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV), Type VI

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
316273.XCV3632				(PF14686) (PF09284) (PF14683)	mitochondrial
316273.XCV0618				(PF00665) PF13276	(mitochondrial); (plastid)
316273.XCV1849				PF13683 PF13276	mitochondrial; (mitochondrial)
316273.XCV3027				(PF01431) (PF05649)	ER
316273.XCV3834				(PF01431) (PF05649)	ER
316273.XCV2900				(PF01431) (PF05649)	ER
316273.XCV0439				PF13683 PF13276	mitochondrial
316273.XCV3432				PF03080	ER
316273.XCV1360			+		ER
316273.XCV2678		(>)			(mitochondrial)
316273.XCV4456			+		(ER)
316273.XCV1586			+		(ER)
316273.XCV0621	(+)			(PF00665)	(mitochondrial)
316273.XCV4194				(PF00930)	ER
316273.XCV3093	+				(mitochondrial); (plastid)
316273.XCV3412	(+)			(PF00665)	(mitochondrial)
316273.XCV4453			+		ER
316273.XCV2726				(PF00930)	mitochondrial
316273.XCV2600				(PF01963)	(mitochondrial)
316273.XCV2738				(PF00930)	mitochondrial
316273.XCV4158	+				mitochondrial; (mitochondrial)
316273.XCV2380	+				ER
316273.XCV0808		(>)			ER
316273.XCV2898				(PF01431) (PF05649)	(ER)
316273.XCV2899				(PF01431) (PF05649)	(plastid)
316273.XCV4286	+				mitochondrial; (plastid)
316273.XCV1721	(+)		+		mitochondrial; (plastid)
316273.XCV1720			+		ER
316273.XCV1727		(>)			(ER); ER
316273.XCV0833			+		ER
316273.XCV2080				(PF06884)	ER
316273.XCV1192			+		(ER)
316273.XCV0007				(PF09295)	ER
316273.XCV0228	(+)			(PF00665)	(mitochondrial)
316273.XCV2719	+		+	(PF05593)
316273.XCV2715				(PF05593)	ER
316273.XCV2404	+				mitochondrial; (mitochondrial)
316273.XCV2572	+				(mitochondrial)
316273.XCV3290	(+)	(>)			ER
316273.XCV4017		(>)			ER
316273.XCV4121		(<)			ER
316273.XCV2760				(PF08212)	ER
316273.XCV1296	(+)			(PF00665)	(mitochondrial)
316273.XCV3962			+		(mitochondrial)
316273.XCV0936				(PF08332)	ER
316273.XCV4136				(PF00930)	ER
316273.XCV3132			+		ER
316273.XCV3640				PF04733	ER
316273.XCV0590				(PF00328)	ER; (ER)
316273.XCV4225				(PF00328)	ER
316273.XCV4226				(PF01419)	ER
316273.XCV2774				(PF01963)	(ER); plastid
316273.XCV3910			+		(mitochondrial); plastid
316273.XCV3655		(<)			ER
316273.XCV3018	+				(mitochondrial); (plastid)
316273.XCV4365				(PF08212)	ER
316273.XCV0474				(PF07653)	mitochondrial
316273.XCV1099		(<)			mitochondrial; (mitochondrial)
316273.XCV3338	+				(mitochondrial); (plastid)
316273.XCV0041			+		ER
316273.XCV0683				(PF08212)	ER
316273.XCV1311				(PF07720)	ER
316273.XCV4191	+				(mitochondrial)
316273.XCV1528			+		ER
316273.XCV1154		(>)			ER
316273.XCV3328		(>)			ER
316273.XCV3250				(PF10142)	ER
316273.XCV3470				(PF08332)	ER
316273.XCV1124			+		(ER)
316273.XCV1274			+		ER
316273.XCV2026		(>)			ER
316273.XCV2022	+	(>)			plastid
316273.XCV1938			+		ER
316273.XCV3686		(>)			ER
316273.XCV1806	+				(mitochondrial); (plastid)
316273.XCV2874		(>)			mitochondrial; (mitochondrial)
316273.XCV1541		+			ER
316273.XCV4092		(>)			(mitochondrial); ER
316273.XCV3695	+				(mitochondrial); (plastid)
316273.XCV0233			+		ER
316273.XCV2596		(>)			ER
316273.XCV2075			+		mitochondrial; (mitochondrial)
316273.XCV3194			+		(mitochondrial)
316273.XCV2917	+				(mitochondrial); (plastid)
316273.XCV4085		(<)			ER
316273.XCV2643		(>)			ER
316273.XCV1353				(PF05593)	ER
316273.XCV3845			+		(mitochondrial)
316273.XCV0189		+			(mitochondrial)
316273.XCV0740	+				plastid
316273.XCV0168	+				plastid
316273.XCV1344			+		(ER)
316273.XCV0365	(+)				(mitochondrial)
316273.XCV2296				(PF00665) PF13276
316273.XCV2295				PF01527	(mitochondrial)
316273.XCV3085	(+)				ER
316273.XCV0625				PF13683 PF13276
316273.XCV3537	+				plastid
316273.XCV3715	+				plastid
316273.XCV0579	(+)				(mitochondrial)
316273.XCV1715	(+)				(mitochondrial); (ER)
316273.XCV0370	(+)				(mitochondrial); plastid
316273.XCV2280	(+)		+		(plastid)
316273.XCV1969				PF13683 PF13276
316273.XCV3410				PF01527	(mitochondrial)
316273.XCV2618				PF13683 PF13276
316273.XCV2725	(+)				ER
316273.XCV2723				PF13683 PF13276
316273.XCV1034			+		(mitochondrial)
316273.XCV2437			+		(mitochondrial)
316273.XCV1634	+				plastid
316273.XCV0810	+				(plastid)
316273.XCV4041	(+)				(mitochondrial)
316273.XCV3398				(PF00665) PF13276
316273.XCV3397				PF01527	(mitochondrial)
316273.XCV1551				PF13683 PF13276
316273.XCV1554			+		(mitochondrial)
316273.XCV2735	+				plastid
316273.XCV0941			+		(mitochondrial)
316273.XCV3387				PF13683 PF13276
316273.XCV3384				PF01527	(mitochondrial)
316273.XCV0706				PF01527	(mitochondrial)
316273.XCV0705				(PF00665) PF13276
316273.XCV0125				PF13683 PF13276
316273.XCV0012			+		(ER)
316273.XCV1513	+				(plastid)
316273.XCV0973			+		(ER)
316273.XCV2158				PF01527	(mitochondrial)
316273.XCV2157				(PF00665) PF13276
316273.XCV2755	(+)				ER
316273.XCV3115	(+)				ER
316273.XCV1843				PF01527	(mitochondrial)
316273.XCV1840				PF13683 PF13276
316273.XCV1844				(PF00665) PF13276
316273.XCV0222				PF13683 PF13276
316273.XCV2405	+				(ER)
316273.XCV2166	+				(plastid)
316273.XCV2360	(+)				ER
316273.XCV3360				PF13683 PF13276
316273.XCV0555	+				(plastid)
316273.XCV3633	(+)				mitochondrial
316273.XCV4233				(PF14441)	(mitochondrial)
316273.XCV4235				PF13683 PF13276
316273.XCV1078	+				(plastid)
316273.XCV4221	+				(ER)
316273.XCV0852				(PF11539)	(mitochondrial)
316273.XCV0993	+				(mitochondrial)
316273.XCV0253	+	(>)
316273.XCV3358	+			(PF05593)
316273.XCV1863				PF13683 PF13276
316273.XCV2771				(PF01963)	(mitochondrial)
316273.XCV2772				PF13683 PF13276
316273.XCV0209	+		+
316273.XCV3914	(+)				(mitochondrial)
316273.XCV3827	(+)				(mitochondrial)
316273.XCV3409				(PF00665) PF13276
316273.XCV0956	(+)				ER
316273.XCV4108	+				(plastid)
316273.XCV4214	+				(plastid)
316273.XCV0050	(+)				(ER)
316273.XCV2690				PF01527	(mitochondrial)
316273.XCV1098				PF13683 PF13276
316273.XCV2351				PF13683 PF13276
316273.XCV4123	+				(plastid)
316273.XCV3460	+				(ER)
316273.XCV0049				(PF08975)	(mitochondrial)
316273.XCV2689				(PF00665) PF13276
316273.XCV4294	+				(plastid)
316273.XCV2521	(+)				(mitochondrial); mitochondrial
316273.XCV1132	(+)				(ER); (plastid)
316273.XCV0224			+		(plastid)
316273.XCV2816				PF13683 PF13276
316273.XCV4300	+				(mitochondrial)
316273.XCV0415	(+)				ER; (ER)
316273.XCV1231	(+)				ER
316273.XCV1236	+				(plastid)
316273.XCV1300				PF13683 PF13276
316273.XCV2780	+				plastid
316273.XCV3383				(PF00665) PF13276
316273.XCV2024	+				mitochondrial
316273.XCV2021	+				plastid
316273.XCV3316		(>)			(mitochondrial)
316273.XCV3768		(<)	+
316273.XCV2806				PF13683 PF13276
316273.XCV0066				PF13683 PF13276
316273.XCV0665	+				(plastid)
316273.XCV1118				PF01527	(mitochondrial)
316273.XCV1119				(PF00665) PF13276
316273.XCV3618	(+)				mitochondrial; (mitochondrial)
316273.XCV2247	+				(plastid)
316273.XCV1156	+		+
316273.XCV0883	+				plastid
316273.XCV1358			+		plastid
316273.XCV3457		(>)			(ER)
316273.XCV3453	+				plastid
316273.XCV4095	+				(mitochondrial)
316273.XCV0540	+				(plastid)
316273.XCV3694	(+)				(mitochondrial); (plastid)
316273.XCV3072	(+)				mitochondrial; (plastid)
316273.XCV1699				(PF00665) PF13276
316273.XCV4297	(+)				(ER)
316273.XCV2276			+		plastid
316273.XCV4408	+				plastid
316273.XCV2478				(PF00665) PF13276
316273.XCV2477				PF01527	(mitochondrial)
316273.XCV2867				PF01527	(mitochondrial)
316273.XCV2866				(PF00665) PF13276
316273.XCV0642				(PF00930)	plastid
316273.XCV0641	(+)				(mitochondrial); (plastid)
316273.XCV0428		+			(plastid)
316273.XCV0420	(+)				mitochondrial
316273.XCV0355				PF01527	(mitochondrial)
316273.XCV0354				(PF00665) PF13276
316273.XCV1354				(PF05593) (PF16158)
316273.XCV2263				PF01527	(mitochondrial)
316273.XCV2262				(PF00665) PF13276
316273.XCV1599	+				(plastid)
316273.XCV3189	(+)				plastid
316273.XCV3188	+
316273.XCV3216	+
316273.XCV2927			+
316273.XCV0985	+
316273.XCV2857	(+)				(plastid)
316273.XCV3720	+
316273.XCV4188	+
316273.XCV0181	+
316273.XCV0743	(+)				plastid
316273.XCV0564			+
316273.XCV1162	(+)				plastid
316273.XCV1166				(PF16387)
316273.XCV3859	(+)				(plastid)
316273.XCV2297				PF13683
316273.XCV2299	+
316273.XCV2458	+
316273.XCV3939	+
316273.XCV0633	+
316273.XCV2933	+
316273.XCV0620				PF01527
316273.XCV0624	+
316273.XCV0626				PF01527
316273.XCV2848	+
316273.XCV3535	+
316273.XCV1973			+
316273.XCV1977	+
316273.XCV0191	+
316273.XCV2850		(>)
316273.XCV2660		(<)
316273.XCV1575	+
316273.XCV0578	+
316273.XCV1393	+
316273.XCV0377	(+)				(ER)
316273.XCV2281	+				not used
316273.XCV4150	+
316273.XCV3308			+
316273.XCV2942	+
316273.XCV2944	+
316273.XCV0619				PF01527
316273.XCV3703			+
316273.XCV1968				PF01527
316273.XCV3411				PF01527
316273.XCV1364	+
316273.XCV2617				PF01527
316273.XCV1814	+
316273.XCV4271	+
316273.XCV1561	+
316273.XCV2722				PF01527
316273.XCV2721				(PF05593)
316273.XCV0294	+				plastid
316273.XCV0388				(PF01163)
316273.XCV2435	+
316273.XCV2547				(PF04768)
316273.XCV1240	+
316273.XCV2130	+
316273.XCV3786	+
316273.XCV4042				(PF01163)
316273.XCV1501	+
316273.XCV4048				(PF08212)
316273.XCV0608				(PF01764)
316273.XCV3396			+
316273.XCV3392	(+)		+
316273.XCV0777	+
316273.XCV3177	+
316273.XCV1825	(+)		+
316273.XCV4265	+
316273.XCV1550				PF01527
316273.XCV2737				(PF00930)
316273.XCV2556			+
316273.XCV0806	+
316273.XCV4073	+
316273.XCV0943	+
316273.XCV2895	(+)		+
316273.XCV3386				PF01527
316273.XCV4381			+
316273.XCV0493	+
316273.XCV0494	+
316273.XCV3164	+
316273.XCV0126				PF01527
316273.XCV4257	+
316273.XCV0013	(+)				(mitochondrial)
316273.XCV3794	+
316273.XCV2709	+
316273.XCV1722	+
316273.XCV1055	+
316273.XCV1054	+
316273.XCV3947	+
316273.XCV3946	+
316273.XCV3949	+
316273.XCV2569			+
316273.XCV1447	+
316273.XCV3559	+
316273.XCV2159	+
316273.XCV2394	+
316273.XCV3283	+
316273.XCV4062	+				not used
316273.XCV3575	+
316273.XCV3577	+
316273.XCV4399	+
316273.XCV3113	(+)				plastid
316273.XCV2624		+
316273.XCV3621	+
316273.XCV4481	+
316273.XCV1841				PF01527
316273.XCV1846				PF13683
316273.XCV1847				PF01527
316273.XCV1845	+
316273.XCV1532	+
316273.XCV3022	+
316273.XCV0229				PF01527
316273.XCV2717				(PF05593)
316273.XCV0223				PF01527
316273.XCV1999	+
316273.XCV1448	+
316273.XCV3073	+
316273.XCV3173	(+)				(plastid)
316273.XCV2578	+
316273.XCV1063	+
316273.XCV0157	+
316273.XCV1351	+
316273.XCV2275			+
316273.XCV3602	+
316273.XCV0519	+
316273.XCV4014	(+)				(mitochondrial)
316273.XCV3562	+
316273.XCV3560				(PF01764)
316273.XCV1061		(<)
316273.XCV1828	(+)				(ER)
316273.XCV3363				PF13683
316273.XCV3362				PF01527
316273.XCV3589	+
316273.XCV3583	+
316273.XCV0729	(+)				(plastid)
316273.XCV2987				PF17067
316273.XCV3634	+
316273.XCV1851				PF01527
316273.XCV1850				PF13683
316273.XCV4231		+
316273.XCV4234				PF01527
316273.XCV3039	+
316273.XCV3035	+
316273.XCV3034	+
316273.XCV3030	+
316273.XCV2409	(+)				(mitochondrial)
316273.XCV0214				(PF00665)
316273.XCV1297				PF01527
316273.XCV1298	+
316273.XCV4341				(PF10013)	not used
316273.XCV1278				PF02551
316273.XCV1676	(+)				(mitochondrial)
316273.XCV2503				(PF01963)
316273.XCV1070			+
316273.XCV1074	+
316273.XCV0258	+
316273.XCV1303			+
316273.XCV0859	(+)				(mitochondrial)
316273.XCV1191		(<)
316273.XCV3357	+
316273.XCV3359				PF01527
316273.XCV2197	+
316273.XCV3138				(PF01764)
316273.XCV0735			+
316273.XCV1194			+
316273.XCV3645			+
316273.XCV3649	(+)		+
316273.XCV1867	(+)				(plastid)
316273.XCV1862				PF01527
316273.XCV3001			+
316273.XCV2779	+
316273.XCV2773				PF01527
316273.XCV0440	+
316273.XCV0443	(+)		+
316273.XCV0350	+
316273.XCV0127		(>)
316273.XCV3405			+
316273.XCV2343	+			(PF00665)
316273.XCV2347	+
316273.XCV3402				(PF12588)
316273.XCV0693	(+)		+
316273.XCV4035	+
316273.XCV0170	(+)				(plastid)
316273.XCV3347	+
316273.XCV2838		(<)
316273.XCV4156	+
316273.XCV1332	+
316273.XCV3651	+
316273.XCV1871	+
316273.XCV1502	+
316273.XCV0051	+
316273.XCV1479	(+)				(plastid)
316273.XCV0478	(+)				(plastid)
316273.XCV0479	+
316273.XCV0475	+
316273.XCV1097				PF01527
316273.XCV0303	+
316273.XCV4284	(+)				(plastid)
316273.XCV2030	+
316273.XCV4287		(>)
316273.XCV1659		(>)
316273.XCV0872	(+)				(plastid)
316273.XCV4117	+
316273.XCV3754		(>)
316273.XCV0042			+
316273.XCV3796		(<)
316273.XCV0265	+
316273.XCV0266	(+)	(>)
316273.XCV2759	+
316273.XCV4371	+
316273.XCV1222		(<)
316273.XCV2680	+
316273.XCV2684			+
316273.XCV1138				PF01527
316273.XCV1139				PF13683
316273.XCV1136	+
316273.XCV3800	+
316273.XCV2534	+
316273.XCV2322	(+)			(PF00665)
316273.XCV0864				(PF00328)
316273.XCV2036	+
316273.XCV2034		(>)
316273.XCV2035	+
316273.XCV2031	+
316273.XCV4363	+
316273.XCV0034		+
316273.XCV3403			+
316273.XCV4168			+
316273.XCV4167				(PF05593)
316273.XCV2817				PF01527
316273.XCV3495	+
316273.XCV0784	+
316273.XCV1911	+
316273.XCV3070	+
316273.XCV0674	(+)				plastid
316273.XCV0675	+
316273.XCV0442	+
316273.XCV1410	+
316273.XCV1414	+
316273.XCV0412	(+)				(ER); not used
316273.XCV0411	+
316273.XCV3922	+
316273.XCV1233	(+)				plastid
316273.XCV4348	+
316273.XCV1301				PF01527
316273.XCV0522	+
316273.XCV2786	+
316273.XCV2220	+
316273.XCV2256	(+)				(plastid)
316273.XCV2338	+
316273.XCV2334	+
316273.XCV1270			+
316273.XCV1243	+
316273.XCV2028	+
316273.XCV0552	+
316273.XCV2805				PF01527
316273.XCV3656	+
316273.XCV1941	+
316273.XCV0791	(+)				(plastid)
316273.XCV3442	+
316273.XCV0065				PF01527
316273.XCV1425	+
316273.XCV1682	+
316273.XCV1684	+
316273.XCV4402	+
316273.XCV3860	(+)				(plastid)
316273.XCV1113				PF01527
316273.XCV1114				PF13683
316273.XCV3867	+
316273.XCV2241	(+)				(mitochondrial)
316273.XCV2240	+				not used
316273.XCV4430	+
316273.XCV0880	+
316273.XCV2011	(+)				plastid
316273.XCV2016	(+)				(mitochondrial)
316273.XCV3279	+
316273.XCV2902	+
316273.XCV4098	(+)				(mitochondrial)
316273.XCV1432		(>)
316273.XCV0438				PF01527
316273.XCV0437				(PF02902)
316273.XCV1928	+
316273.XCV2653	+
316273.XCV1698				PF01527
316273.XCV1692	+
316273.XCV1216	+
316273.XCV4161	+
316273.XCV4058	+
316273.XCV2002	+
316273.XCV2079		+
316273.XCV1110			+
316273.XCV4153	(+)				(mitochondrial)
316273.XCV3864		+
316273.XCV4218	+
316273.XCV3429	+
316273.XCV3510	+
316273.XCV3737	+
316273.XCV4339	+
316273.XCV0357		+
316273.XCV0358	+
316273.XCV2647	+
316273.XCV1350	+
316273.XCV1356				PF01527
316273.XCV1355				PF13683
316273.XCV0514		(<)
316273.XCV1598	(+)				(plastid)
316273.XCV1204	+
316273.XCV2888	+
316273.XCV3684	+
316273.XCV2588	+
316273.XCV2100	+
316273.XCV3898			+
316273.XCV0146	+
316273.XCV0161	(+)
316273.XCV2673	(+)
316273.XCV4457	(+)
316273.XCV1169	(+)
316273.XCV1764	(+)
316273.XCV0368	(+)
316273.XCV0367	(+)
316273.XCV0360	(+)
316273.XCV3983	(+)
316273.XCV3985	(+)
316273.XCV1206	(+)
316273.XCV1705	(+)
316273.XCV3220	(+)
316273.XCV0980	(+)
316273.XCV3531	(+)
316273.XCV2847	(+)
316273.XCV3713	(+)
316273.XCV3150	(+)
316273.XCV3151	(+)
316273.XCV3051	(+)
316273.XCV1800	(+)
316273.XCV0611	(+)
316273.XCV1396	(+)
316273.XCV0375	(+)
316273.XCV1028	(+)
316273.XCV0599	(+)
316273.XCV2288	(+)
316273.XCV1625	(+)
316273.XCV1517	(+)
316273.XCV3885	(+)
316273.XCV2120	(+)
316273.XCV2947	(+)
316273.XCV3521	(+)
316273.XCV2724	(+)
316273.XCV0444	(+)
316273.XCV3852	(+)
316273.XCV2883	(+)
316273.XCV2542	(+)
316273.XCV1168	(+)
316273.XCV3858	(+)
316273.XCV2137	(+)
316273.XCV2136	(+)
316273.XCV2135	(+)
316273.XCV4396	(+)
316273.XCV0818	(+)
316273.XCV0819	(+)
316273.XCV1955	(+)
316273.XCV1953	(+)
316273.XCV4460	(+)
316273.XCV4466	(+)
316273.XCV1829	(+)
316273.XCV0657	(+)
316273.XCV2734	(+)
316273.XCV2739	(+)
316273.XCV1739	(+)
316273.XCV0392	(+)				not used
316273.XCV1049	(+)
316273.XCV2621	(+)
316273.XCV3952	(+)
316273.XCV1606	(+)
316273.XCV1912	(+)
316273.XCV2550	(+)
316273.XCV2143	(+)
316273.XCV2147	(+)
316273.XCV2385	(+)
316273.XCV3696	(+)
316273.XCV4070	(+)
316273.XCV4075	(+)
316273.XCV4076	(+)
316273.XCV4078	(+)
316273.XCV0940	(+)
316273.XCV3389	(+)
316273.XCV2896	(+)
316273.XCV1943	(+)
316273.XCV0704	(+)
316273.XCV3161	(+)
316273.XCV1831	(+)
316273.XCV0018	(+)
316273.XCV1614	(+)
316273.XCV2393	(+)
316273.XCV2390	(+)
316273.XCV2397	(+)
316273.XCV1377	(+)
316273.XCV0836	(+)
316273.XCV0837	(+)
316273.XCV4064	(+)
316273.XCV4063	(+)				not used
316273.XCV0958	(+)
316273.XCV3573	(+)
316273.XCV3373	(+)
316273.XCV3379	(+)
316273.XCV3596	(+)
316273.XCV4397	(+)
316273.XCV2975	(+)
316273.XCV4240	(+)
316273.XCV2407	(+)
316273.XCV1631	(+)
316273.XCV2570	(+)
316273.XCV2574	(+)
316273.XCV2367	(+)
316273.XCV2365	(+)
316273.XCV1914	(+)
316273.XCV3563	(+)
316273.XCV3580	(+)
316273.XCV4126	(+)
316273.XCV2986	(+)
316273.XCV0345	(+)
316273.XCV1855	(+)				not used
316273.XCV4347	(+)
316273.XCV4342	(+)
316273.XCV1674	(+)
316273.XCV3941	(+)
316273.XCV1077	(+)
316273.XCV2176	(+)
316273.XCV2376	(+)
316273.XCV0255	(+)
316273.XCV1309	(+)
316273.XCV4004	(+)				not used
316273.XCV0994	(+)
316273.XCV3532	(+)
316273.XCV3354	(+)
316273.XCV4135	(+)
316273.XCV1122	(+)
316273.XCV0731	(+)
316273.XCV2998	(+)
316273.XCV1866	(+)
316273.XCV3006	(+)
316273.XCV1463	(+)
316273.XCV1467	(+)
316273.XCV0447	(+)
316273.XCV3916	(+)
316273.XCV1609	(+)
316273.XCV1884	(+)
316273.XCV4193	(+)
316273.XCV2516	(+)
316273.XCV4190	+
316273.XCV2208	(+)
316273.XCV2203	(+)
316273.XCV2341	(+)
316273.XCV1177	(+)
316273.XCV0177	(+)
316273.XCV4030	(+)
316273.XCV2776	(+)
316273.XCV4039	(+)
316273.XCV1175	(+)
316273.XCV0172	(+)
316273.XCV0909	(+)
316273.XCV2374	(+)
316273.XCV3348	(+)
316273.XCV4089	(+)
316273.XCV3652	(+)
316273.XCV4211	(+)
316273.XCV1371	(+)
316273.XCV0056	(+)
316273.XCV0697	(+)
316273.XCV0692	(+)
316273.XCV1475	(+)
316273.XCV0572	(+)
316273.XCV0472	(+)
316273.XCV2699	(+)
316273.XCV1890	(+)
316273.XCV1251	(+)
316273.XCV1096	(+)
316273.XCV2188	(+)
316273.XCV2597	(+)
316273.XCV2352	(+)
316273.XCV3105	(+)
316273.XCV4022	(+)
316273.XCV0914	(+)
316273.XCV3330	(+)
316273.XCV2829	(+)
316273.XCV3244	(+)
316273.XCV0262	(+)
316273.XCV0264	(+)
316273.XCV4376	(+)
316273.XCV2686	(+)				not used
316273.XCV1314	(+)
316273.XCV3803	(+)
316273.XCV3804	(+)
316273.XCV0681	(+)
316273.XCV0113	(+)
316273.XCV0865	(+)
316273.XCV4160	(+)
316273.XCV0212	(+)
316273.XCV0785	(+)
316273.XCV1783	(+)
316273.XCV2237	(+)
316273.XCV1412	(+)				not used
316273.XCV0414	(+)
316273.XCV3676	(+)
316273.XCV0326	(+)
316273.XCV1128	(+)
316273.XCV0105	(+)
316273.XCV0106	(+)
316273.XCV0453	(+)
316273.XCV0949	(+)
316273.XCV2337	(+)
316273.XCV3388	(+)
316273.XCV2023	(+)
316273.XCV3310	(+)
316273.XCV2802	(+)
316273.XCV0052	(+)
316273.XCV0557	(+)
316273.XCV0796	(+)
316273.XCV0080	(+)
316273.XCV1423	(+)
316273.XCV1428	(+)
316273.XCV1939	(+)
316273.XCV0400	(+)
316273.XCV0068	(+)
316273.XCV0332	(+)
316273.XCV0534	(+)
316273.XCV3869	(+)
316273.XCV2795	(+)
316273.XCV2302	(+)
316273.XCV2308	(+)
316273.XCV2013	(+)
316273.XCV2231	(+)
316273.XCV1834	(+)
316273.XCV4311	(+)
316273.XCV1209	(+)
316273.XCV3276	(+)
316273.XCV4002	(+)
316273.XCV0651	(+)
316273.XCV0654	(+)
316273.XCV0656	(+)
316273.XCV4323	(+)
316273.XCV1937	(+)
316273.XCV1691	(+)
316273.XCV2659	(+)
316273.XCV1323	(+)
316273.XCV4295	(+)
316273.XCV4296	(+)
316273.XCV2270	(+)
316273.XCV2271	(+)
316273.XCV2742	(+)
316273.XCV0613	(+)
316273.XCV3520	(+)
316273.XCV4151	(+)
316273.XCV2864	(+)
316273.XCV2919	(+)
316273.XCV3736	(+)
316273.XCV2488	(+)
316273.XCV2646	(+)
316273.XCV2649	(+)
316273.XCV4422	(+)
316273.XCV3846	(+)
316273.XCV3849	(+)
316273.XCV2461	(+)
316273.XCV3064	(+)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
• EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
• EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
• T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
• T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: YES (FDR = 12.5 %)
  Estimated copy number = 1.1 (11/10 KEGG proteins)
• Functional Type IV secretion system: YES (FDR = 7.2 %)
  Estimated copy number = 0.2 (2/10 KEGG proteins)
• Functional Type VI secretion system: YES (FDR = 7.7 %)
  Estimated copy number = 2.5 (20/8 KEGG proteins)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================