Metamenu

Effective results for Salinibacter ruber DSM 13855 (eggnog40)

Summary

Number of putative secreted proteins: 82
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 82 proteins (32 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
309807.SRU_2265(PF02080) (PF02254)(ER)
309807.SRU_2811(PF14312) (PF13415)mitochondrial
309807.SRU_1255(PF02080) (PF02254)(mitochondrial); plastid
309807.SRU_0446(PF16313)ER
309807.SRU_2579PF01036ER
309807.SRU_0584(PF02080)ER
309807.SRU_0349(PF16313)ER
309807.SRU_2414(PF02469)(mitochondrial)
309807.SRU_2176(PF02469)ER
309807.SRU_0810(PF02080)ER
309807.SRU_1156(PF14312)ER
309807.SRU_2209(PF02469)ER
309807.SRU_0768(PF03959)mitochondrial; (mitochondrial)
309807.SRU_0994(PF00685)(mitochondrial)
309807.SRU_0361(PF13860)ER
309807.SRU_2694(PF13415)mitochondrial
309807.SRU_2272(PF02254)ER
309807.SRU_2273(PF02254)ER
309807.SRU_2248(PF02469)(mitochondrial); mitochondrial
309807.SRU_1916(PF13860)ER
309807.SRU_2713(PF16184)ER; (mitochondrial)
309807.SRU_0261(PF02469)mitochondrial
309807.SRU_2609(PF13860)(ER)
309807.SRU_2511PF01036ER
309807.SRU_2036(PF02469)mitochondrial; (mitochondrial)
309807.SRU_0703(PF02254)(mitochondrial)
309807.SRU_2749(PF16313)plastid
309807.SRU_2262(PF02080) (PF02254)
309807.SRU_2266(PF02080) (PF02254)
309807.SRU_2270(PF02080) (PF02254)
309807.SRU_2275(PF02080)(ER)
309807.SRU_1622PF08434(plastid)
309807.SRU_0409(PF02080) (PF02254)
309807.SRU_2383(PF04450)(plastid)
309807.SRU_2632(PF00685)(ER)
309807.SRU_0615(PF00685)(mitochondrial)
309807.SRU_0855(PF02080) (PF02254)
309807.SRU_1500PF01036
309807.SRU_0632PF13384
309807.SRU_1266(PF08547)
309807.SRU_0026PF05203
309807.SRU_2428(PF16313)
309807.SRU_1034PF00338
309807.SRU_2780PF01036
309807.SRU_2783(PF05761)
309807.SRU_1396(PF13860)
309807.SRU_1397PF13384
309807.SRU_2335PF13384
309807.SRU_2336PF03400
309807.SRU_0307(PF04450)
309807.SRU_2141PF13384
309807.SRU_0941(PF13860)
309807.SRU_2455PF13384
309807.SRU_2456PF03400
309807.SRU_1000(PF00685)
309807.SRU_2267PF13384
309807.SRU_1767(PF02080)
309807.SRU_0184PF13384
309807.SRU_2475(PF05495)
309807.SRU_0732PF13384
309807.SRU_0731PF03400
309807.SRU_2484PF13384
309807.SRU_2483PF03400
309807.SRU_2259(PF03522)
309807.SRU_2256(PF02254)
309807.SRU_0714PF00338
309807.SRU_0713PF03400
309807.SRU_0712PF13384
309807.SRU_2396(PF08547)
309807.SRU_2011PF13384
309807.SRU_2013PF13384
309807.SRU_2704PF03400
309807.SRU_2706PF13384
309807.SRU_2633(PF00685)
309807.SRU_1398PF03400
309807.SRU_0114(PF16184)
309807.SRU_0287(PF14328)
309807.SRU_2024PF03400
309807.SRU_2023PF13384
309807.SRU_1071(PF12038)
309807.SRU_0108PF13384
309807.SRU_0109PF03400

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================