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Genomes encoding eukaryotic-like proteins

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PF00338 Ribosomal protein S10p/S20e

Copy number in non-pathogens:
Mean=0.99 Stddev=0.13

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Streptococcus pneumoniae s 7 2
Mycobacterium tuberculosis s 7 2
Escherichia coli s 7 2
Streptococcus pneumoniae s 7 2
Escherichia coli s 7 2
Clostridioides difficile s 7 2
Klebsiella variicola s 7 2
Escherichia coli DEC4E s 7 2
Streptococcus oralis SK100 s 7 2
Chlamydia psittaci 01DC11 p 7 2
Chlamydia psittaci 02DC18 s 7 2
Herbaspirillum rubrisubalbicans Os34 s 7 2
Herbaspirillum rubrisubalbicans Os45 s 7 2
Butyrivibrio sp. AE2032 s 7 2
Actinomyces sp. S6-Spd3 s 7 2
Tissierellia bacterium S5-A11 s 7 2
Escherichia coli s 7 2
Bradyrhizobium japonicum s 7 2
Staphylococcus epidermidis s 7 2
Pseudomonas stutzeri s 7 2
Coxiella endosymbiont of Amblyomma americanum s 7 2
Pseudomonas aeruginosa s 7 2
Flavobacterium psychrophilum s 7 2
Escherichia coli s 7 2
Chlamydia psittaci s 7 2
Pseudomonas fluorescens s 7 2
Proteus mirabilis s 7 2
Acinetobacter baumannii s 7 2
Acinetobacter baumannii s 7 2
Enterococcus faecium s 7 2
Aeromonas hydrophila s 7 2
Bacillus anthracis s 7 2
Pseudomonas aeruginosa s 7 2
Bacillus safensis s 7 2
Pseudomonas stutzeri s 7 2
Pseudomonas putida s 7 2
Pseudomonas putida s 7 2
Pseudomonas putida s 7 2

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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