Effective results for Chlorobium limicola DSM 245 (eggnog40)

Summary

Number of putative secreted proteins: 50
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 20 eukaryotic-like domains, contained in 50 proteins (1 high, 49 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
290315.Clim_0021(PF12159) (PF10693)ER; (ER)
290315.Clim_1409PF10046(ER)
290315.Clim_2364(PF02374)mitochondrial
290315.Clim_0078(PF02374)(mitochondrial)
290315.Clim_1216(PF02374)(mitochondrial); mitochondrial
290315.Clim_0784(PF13271)ER; (ER)
290315.Clim_2143(PF02374)mitochondrial
290315.Clim_2147(PF02374)(mitochondrial); mitochondrial
290315.Clim_0966(PF02374)(mitochondrial)
290315.Clim_1931(PF08843)mitochondrial; (mitochondrial)
290315.Clim_1667(PF13394)(ER)
290315.Clim_1020(PF01078)(mitochondrial)
290315.Clim_0952(PF04422) (PF04432)
290315.Clim_2156(PF11965) (PF02514)
290315.Clim_2154(PF11965) (PF02514)
290315.Clim_1791(PF04422) (PF04432)
290315.Clim_1914(PF13394)
290315.Clim_1913(PF13394)
290315.Clim_1755(PF08843)
290315.Clim_0678(PF13394)
290315.Clim_2384(PF13394)
290315.Clim_0605(PF01078)
290315.Clim_0116(PF08843)
290315.Clim_0082(PF09366)
290315.Clim_2352(PF09366)
290315.Clim_1414(PF13394)
290315.Clim_0278(PF04765)
290315.Clim_1018(PF02514)
290315.Clim_0440(PF08843)
290315.Clim_1663(PF14252)
290315.Clim_1871(PF14252)
290315.Clim_1874(PF14252)
290315.Clim_1476(PF16095)
290315.Clim_0052(PF01823)
290315.Clim_1467(PF13271)
290315.Clim_2160(PF14252)
290315.Clim_1022(PF02514)
290315.Clim_1021(PF01078)
290315.Clim_0551(PF02374)
290315.Clim_1232(PF16114)
290315.Clim_1492(PF01078)
290315.Clim_1493(PF01078)
290315.Clim_0785(PF04326)
290315.Clim_2459(PF13271)
290315.Clim_2269(PF04326)
290315.Clim_2462(PF04326)
290315.Clim_0431(PF02475)
290315.Clim_1766(PF13394)
290315.Clim_1587(PF04326)
290315.Clim_0213(PF08843)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================