Effective results for Synechococcus sp. CB0205 (eggnog40)

Summary

Number of putative secreted proteins: 130
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 102 eukaryotic-like domains, contained in 130 proteins (10 high, 120 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
232363.SCB02_010100013239				(PF16639) (PF01333)	(mitochondrial); plastid
232363.SCB02_010100006926				(PF10716)	ER
232363.SCB02_010100008760				(PF04278)	mitochondrial
232363.SCB02_010100006921				(PF11460)	ER
232363.SCB02_010100003943				(PF01716)	ER
232363.SCB02_010100008895				(PF13326)	ER
232363.SCB02_010100008930				(PF11016)	ER; (ER)
232363.SCB02_010100012642				(PF01789)	mitochondrial
232363.SCB02_010100012355				(PF12437)	mitochondrial
232363.SCB02_010100004691				(PF11909)	(mitochondrial); mitochondrial
232363.SCB02_010100010691				(PF10693)	(ER)
232363.SCB02_010100003011				(PF01737)	ER
232363.SCB02_010100009957				(PF11152)	ER
232363.SCB02_010100003878				(PF07444)	ER
232363.SCB02_010100008690				PF16709	ER
232363.SCB02_010100011316				(PF04483)	(mitochondrial)
232363.SCB02_010100002242				(PF16166)	ER
232363.SCB02_010100003913				(PF04483)	ER
232363.SCB02_010100004973				(PF12899)	(mitochondrial)
232363.SCB02_010100000399				(PF07444)	ER
232363.SCB02_010100006397				(PF02392)	(mitochondrial); (plastid)
232363.SCB02_010100007703				(PF12437)	(mitochondrial)
232363.SCB02_010100009350				(PF07082)	(mitochondrial)
232363.SCB02_010100013204				(PF02507)	ER
232363.SCB02_010100005130				(PF11317)	ER
232363.SCB02_010100002337				(PF04481)	mitochondrial
232363.SCB02_010100004525				(PF12046)	ER
232363.SCB02_010100000776				(PF06514)	ER
232363.SCB02_010100003453				(PF00283)	(ER); not used
232363.SCB02_010100012460				(PF06298)	ER; not used
232363.SCB02_010100006811				(PF01744)	(plastid)
232363.SCB02_010100001773				(PF01947)	plastid
232363.SCB02_010100012113				PF08332	(plastid)
232363.SCB02_010100003758				(PF02468)	ER; not used
232363.SCB02_010100005363				(PF00504)	mitochondrial; not used
232363.SCB02_010100001296				(PF05154)	(ER)
232363.SCB02_010100000394				(PF06596)	ER; not used
232363.SCB02_010100003673				(PF09366)
232363.SCB02_010100003698				(PF11378)
232363.SCB02_010100003458				(PF00283)
232363.SCB02_010100005733				(PF02941)
232363.SCB02_010100005206				(PF02672)
232363.SCB02_010100004886				(PF00796)	not used
232363.SCB02_010100008970				(PF08854)
232363.SCB02_010100010284				(PF12204)
232363.SCB02_010100007743				PF04098
232363.SCB02_010100000981				(PF00124)
232363.SCB02_010100001890				(PF05019)
232363.SCB02_010100008148				(PF05154)
232363.SCB02_010100003448				PF02419	not used
232363.SCB02_010100003443				(PF01788)
232363.SCB02_010100004891				(PF02605)
232363.SCB02_010100013029				(PF02529)	not used
232363.SCB02_010100004654				(PF10999)
232363.SCB02_010100011096				(PF05019)
232363.SCB02_010100009687				(PF05996)
232363.SCB02_010100012078				PF16865
232363.SCB02_010100010139				(PF09353)
232363.SCB02_010100009210				(PF00124)
232363.SCB02_010100004133				(PF00223)
232363.SCB02_010100000414				(PF00504)
232363.SCB02_010100006070				(PF00124)
232363.SCB02_010100005075				(PF08853)
232363.SCB02_010100004128				(PF00223)	not used
232363.SCB02_010100004121				(PF00223)
232363.SCB02_010100008303				(PF05154)
232363.SCB02_010100008233				PF04098
232363.SCB02_010100003763				(PF00737)
232363.SCB02_010100004686				(PF12617)
232363.SCB02_010100001096				(PF11371)
232363.SCB02_010100001091				(PF10664)
232363.SCB02_010100011111				(PF12452)
232363.SCB02_010100011331				(PF05969)	not used
232363.SCB02_010100010881				(PF02245)
232363.SCB02_010100000509				(PF02943)
232363.SCB02_010100009942				(PF03040)
232363.SCB02_010100010696				(PF12159)
232363.SCB02_010100010219				(PF11360)
232363.SCB02_010100008133				(PF02245)	not used
232363.SCB02_010100009535				(PF11282)
232363.SCB02_010100012712				PF08332	not used
232363.SCB02_010100003748				(PF02532)	not used
232363.SCB02_010100008665				(PF08847)
232363.SCB02_010100006422				(PF08041)	not used
232363.SCB02_010100012210				(PF02672)
232363.SCB02_010100005423				(PF11341)
232363.SCB02_010100005353				(PF04983)
232363.SCB02_010100005358				(PF04983)
232363.SCB02_010100003903				(PF02245)
232363.SCB02_010100000926				(PF11910)
232363.SCB02_010100000841				(PF12095)
232363.SCB02_010100012028				(PF06799)
232363.SCB02_010100005633				(PF04839)
232363.SCB02_010100004168				(PF05151)	not used
232363.SCB02_010100000861				(PF05421)
232363.SCB02_010100004398				(PF05996)
232363.SCB02_010100004393				(PF05996)
232363.SCB02_010100004620				(PF14159)
232363.SCB02_010100009450				(PF11947)
232363.SCB02_010100011371				(PF11210)
232363.SCB02_010100009672				(PF11347)
232363.SCB02_010100006417				PF02005
232363.SCB02_010100005963				(PF08855)
232363.SCB02_010100004560				(PF02531)
232363.SCB02_010100013229				(PF11267)
232363.SCB02_010100004036				(PF09366)
232363.SCB02_010100010786				PF03742	not used
232363.SCB02_010100010766				(PF11264)
232363.SCB02_010100011216				(PF12527)
232363.SCB02_010100006392				(PF00124)
232363.SCB02_010100003633				(PF02533)	not used
232363.SCB02_010100002657				(PF11623)
232363.SCB02_010100012897				(PF08417)
232363.SCB02_010100011511				(PF12049)
232363.SCB02_010100007383				(PF00504)
232363.SCB02_010100013209				(PF01701)	not used
232363.SCB02_010100011993				(PF00504)	not used
232363.SCB02_010100005000				(PF02427)
232363.SCB02_010100005221				(PF10063)
232363.SCB02_010100013838				(PF02245)
232363.SCB02_010100011531				(PF11833)
232363.SCB02_010100007183				(PF13911)
232363.SCB02_010100006292				(PF13355)
232363.SCB02_010100012532				(PF10674)
232363.SCB02_010100010916				(PF02245)
232363.SCB02_010100004980				PF08332
232363.SCB02_010100005588				(PF11805)
232363.SCB02_010100012997				(PF14159)
232363.SCB02_010100004183				(PF01405)	not used
232363.SCB02_010100007378				(PF00504)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================