Effective results for Synechococcus sp. RS9917 (eggnog40)

Summary

Number of putative secreted proteins: 154
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 106 eukaryotic-like domains, contained in 154 proteins (20 high, 134 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
221360.RS9917_09106(PF16639) (PF01333)ER
221360.RS9917_09566PF13384(mitochondrial)
221360.RS9917_11425(PF07082)(mitochondrial)
221360.RS9917_08741(PF11317)ER
221360.RS9917_10876(PF12437)(mitochondrial); plastid
221360.RS9917_11255(PF13565)(mitochondrial); mitochondrial
221360.RS9917_09776(PF13326)mitochondrial
221360.RS9917_00652(PF13565)(mitochondrial); mitochondrial
221360.RS9917_05890(PF16166)ER
221360.RS9917_02386(PF13301)ER
221360.RS9917_07830(PF07444)ER; (ER)
221360.RS9917_03668(PF07444)ER
221360.RS9917_12825(PF11152)ER
221360.RS9917_08385(PF11805)ER
221360.RS9917_08260(PF13565)(mitochondrial); mitochondrial
221360.RS9917_00612(PF13565)(mitochondrial); mitochondrial
221360.RS9917_13733(PF12437)mitochondrial
221360.RS9917_00922(PF01789)ER
221360.RS9917_03588(PF01716)ER
221360.RS9917_03963(PF13565)(mitochondrial); mitochondrial
221360.RS9917_10361(PF10716)ER
221360.RS9917_10366(PF11460)ER
221360.RS9917_04240PF13384(mitochondrial)
221360.RS9917_02571(PF13301)ER
221360.RS9917_04660(PF13565)(mitochondrial); mitochondrial
221360.RS9917_05350(PF01737)ER
221360.RS9917_02983(PF12046)ER
221360.RS9917_12455(PF10693)(ER)
221360.RS9917_04680(PF13565)(mitochondrial); mitochondrial
221360.RS9917_01562PF02005(mitochondrial); mitochondrial
221360.RS9917_09141(PF02507)ER
221360.RS9917_03883(PF13301)ER
221360.RS9917_07425(PF06514)ER
221360.RS9917_07360(PF12095)(mitochondrial)
221360.RS9917_11071PF13384(mitochondrial)
221360.RS9917_05440(PF04481)mitochondrial
221360.RS9917_10116(PF13565)(mitochondrial); mitochondrial
221360.RS9917_07835(PF06596)ER; not used
221360.RS9917_09721(PF00140)(plastid)
221360.RS9917_06460(PF05019)(ER)
221360.RS9917_12450(PF12159)(ER)
221360.RS9917_03788(PF02468)ER; not used
221360.RS9917_04445(PF00284) (PF00283)
221360.RS9917_12150(PF12452)(ER)
221360.RS9917_13778PF04098(plastid)
221360.RS9917_04450(PF00283)(ER); not used
221360.RS9917_06325(PF01947)(ER)
221360.RS9917_04225PF04098(plastid)
221360.RS9917_00747(PF06298)ER; not used
221360.RS9917_09561(PF13565)
221360.RS9917_03508(PF03306)
221360.RS9917_03878(PF09366)
221360.RS9917_02703(PF12899)
221360.RS9917_00737PF04098
221360.RS9917_00647PF13384
221360.RS9917_02808(PF01405)not used
221360.RS9917_01427(PF05019)
221360.RS9917_07815(PF00504)
221360.RS9917_09116(PF11267)
221360.RS9917_09111(PF08802)
221360.RS9917_05040(PF11623)
221360.RS9917_03798(PF02532)not used
221360.RS9917_13065(PF01744)
221360.RS9917_01252(PF14159)
221360.RS9917_10261PF00996
221360.RS9917_09741(PF11016)
221360.RS9917_03073(PF14159)
221360.RS9917_05965(PF00140)
221360.RS9917_03498(PF00124)
221360.RS9917_12655(PF09353)
221360.RS9917_00280(PF11210)
221360.RS9917_09136(PF01701)not used
221360.RS9917_03803(PF12600)
221360.RS9917_07225(PF00124)
221360.RS9917_01277(PF02529)not used
221360.RS9917_07485(PF00504)not used
221360.RS9917_10626(PF00124)
221360.RS9917_09381(PF13911)
221360.RS9917_08185(PF11341)
221360.RS9917_03128(PF11909)
221360.RS9917_03123(PF12617)
221360.RS9917_03343(PF12204)
221360.RS9917_04305(PF03492)
221360.RS9917_03348(PF00223)
221360.RS9917_10806(PF03306)
221360.RS9917_00607PF13384
221360.RS9917_03353(PF00223)
221360.RS9917_09396(PF00504)
221360.RS9917_00337(PF04483)
221360.RS9917_07735(PF02943)
221360.RS9917_07200(PF13565)
221360.RS9917_07205PF13384
221360.RS9917_03918(PF02533)not used
221360.RS9917_08716(PF08855)
221360.RS9917_12125(PF12527)
221360.RS9917_07275(PF11910)
221360.RS9917_03968PF13384
221360.RS9917_13438PF04098
221360.RS9917_13948PF13384
221360.RS9917_00317(PF05969)not used
221360.RS9917_04245(PF13565)
221360.RS9917_10426(PF00140)
221360.RS9917_04460(PF01788)
221360.RS9917_02793(PF05151)not used
221360.RS9917_13578(PF06799)
221360.RS9917_08451(PF04839)
221360.RS9917_08120(PF04983)
221360.RS9917_08125(PF04983)
221360.RS9917_11840(PF11347)
221360.RS9917_07090(PF11371)
221360.RS9917_07095(PF10664)
221360.RS9917_03783(PF00737)
221360.RS9917_00155(PF12049)
221360.RS9917_01557(PF08041)not used
221360.RS9917_11520(PF11947)
221360.RS9917_09991(PF08847)
221360.RS9917_08025(PF00124)
221360.RS9917_12840(PF03040)
221360.RS9917_03318(PF00796)not used
221360.RS9917_02551(PF08853)
221360.RS9917_04685PF13384
221360.RS9917_01961(PF13355)
221360.RS9917_00812(PF10674)
221360.RS9917_00140(PF11833)
221360.RS9917_10731(PF08417)
221360.RS9917_03098(PF10999)
221360.RS9917_08491(PF02941)
221360.RS9917_03323(PF02605)
221360.RS9917_05900PF10712
221360.RS9917_04455PF02419not used
221360.RS9917_01022(PF00140)
221360.RS9917_07345(PF05421)
221360.RS9917_01971(PF00140)
221360.RS9917_10581(PF08854)
221360.RS9917_10121PF13384
221360.RS9917_12390(PF11264)
221360.RS9917_12375PF03742not used
221360.RS9917_05265(PF00140)
221360.RS9917_13025(PF08802)
221360.RS9917_01582(PF02392)
221360.RS9917_01587(PF00124)
221360.RS9917_03013(PF02531)
221360.RS9917_10826(PF10013)not used
221360.RS9917_11260PF13384
221360.RS9917_11700(PF11282)
221360.RS9917_03458(PF09366)
221360.RS9917_06165(PF00140)
221360.RS9917_11076(PF13565)
221360.RS9917_12975(PF00124)
221360.RS9917_03623(PF04483)
221360.RS9917_12575(PF11360)
221360.RS9917_02661(PF02427)
221360.RS9917_03848(PF11378)
221360.RS9917_07990(PF10063)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================