Effective results for Sphaerochaeta globosa str. Buddy (eggnog40)

Summary

Number of putative secreted proteins: 91
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 34 eukaryotic-like domains, contained in 91 proteins (11 high, 80 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
158189.SpiBuddy_2150(PF02844) (PF02843)(mitochondrial)
158189.SpiBuddy_1720(PF01970)ER
158189.SpiBuddy_0135(PF13173)(mitochondrial)
158189.SpiBuddy_0625PF11999ER
158189.SpiBuddy_0624PF11999ER
158189.SpiBuddy_0626PF11999ER
158189.SpiBuddy_2012PF11999ER
158189.SpiBuddy_2728PF11999ER
158189.SpiBuddy_2008(PF02608)ER
158189.SpiBuddy_0188(PF01970)ER
158189.SpiBuddy_0453(PF02608)ER
158189.SpiBuddy_0692PF11999ER
158189.SpiBuddy_2036(PF12681)(ER)
158189.SpiBuddy_2696(PF01970)(ER)
158189.SpiBuddy_2978(PF01970)ER
158189.SpiBuddy_0555(PF02608)ER
158189.SpiBuddy_2405(PF07720)(mitochondrial)
158189.SpiBuddy_2953(PF01970)(ER)
158189.SpiBuddy_0030(PF01195)(mitochondrial)
158189.SpiBuddy_0765(PF13173)mitochondrial
158189.SpiBuddy_2431(PF02608)ER
158189.SpiBuddy_1687PF03815ER
158189.SpiBuddy_1358(PF01970)ER
158189.SpiBuddy_2554PF03815ER
158189.SpiBuddy_0714(PF01970)ER
158189.SpiBuddy_1536(PF02608)ER
158189.SpiBuddy_3001(PF02608)ER
158189.SpiBuddy_0926(PF02608)ER
158189.SpiBuddy_0722(PF01970)(ER)
158189.SpiBuddy_2075PF03727 PF00349
158189.SpiBuddy_0395(PF04432) (PF04422)
158189.SpiBuddy_2804(PF02844) (PF02843)
158189.SpiBuddy_0270(PF04432) (PF04422)
158189.SpiBuddy_0302(PF04432) (PF04422)
158189.SpiBuddy_0154(PF13173)(mitochondrial)
158189.SpiBuddy_2463(PF12762)
158189.SpiBuddy_0415(PF04326)
158189.SpiBuddy_2251(PF01182)
158189.SpiBuddy_2383(PF12762)
158189.SpiBuddy_0138(PF04326)
158189.SpiBuddy_0622(PF13173)
158189.SpiBuddy_1448(PF01813)
158189.SpiBuddy_0876(PF01182)
158189.SpiBuddy_1042(PF01182)
158189.SpiBuddy_1450(PF16886)
158189.SpiBuddy_1936(PF01195)
158189.SpiBuddy_1592(PF02906)
158189.SpiBuddy_0512(PF01970)
158189.SpiBuddy_2915PF12738
158189.SpiBuddy_0854(PF12762)
158189.SpiBuddy_1323(PF01182)
158189.SpiBuddy_0663(PF01409)
158189.SpiBuddy_0206(PF13173)
158189.SpiBuddy_0845(PF12681)
158189.SpiBuddy_0662(PF01409)
158189.SpiBuddy_0193(PF01182)
158189.SpiBuddy_0338(PF13173)
158189.SpiBuddy_0680(PF13173)
158189.SpiBuddy_1127(PF16011)
158189.SpiBuddy_1946(PF01880)
158189.SpiBuddy_1944(PF01008)
158189.SpiBuddy_1017(PF12762)
158189.SpiBuddy_2161(PF01875)
158189.SpiBuddy_0223(PF13173)
158189.SpiBuddy_0222(PF13173)
158189.SpiBuddy_0224(PF04326)
158189.SpiBuddy_1150(PF01813)
158189.SpiBuddy_2579(PF14249)
158189.SpiBuddy_2577(PF07478)
158189.SpiBuddy_2576(PF07478)
158189.SpiBuddy_2573(PF07478)
158189.SpiBuddy_2312(PF02906)
158189.SpiBuddy_1789(PF07478)
158189.SpiBuddy_1147(PF01991)
158189.SpiBuddy_1148(PF16886)
158189.SpiBuddy_2891(PF02906)
158189.SpiBuddy_0803PF09813
158189.SpiBuddy_1778(PF01875)
158189.SpiBuddy_0374(PF12762)
158189.SpiBuddy_1174(PF12437)
158189.SpiBuddy_1683(PF01880)
158189.SpiBuddy_2888(PF02906)
158189.SpiBuddy_1233(PF03266)
158189.SpiBuddy_0596(PF04326)
158189.SpiBuddy_1535(PF01008)
158189.SpiBuddy_0102(PF16314)
158189.SpiBuddy_2297(PF02906)
158189.SpiBuddy_2875(PF12762)
158189.SpiBuddy_0115(PF12437)
158189.SpiBuddy_1734(PF01008)
158189.SpiBuddy_1881(PF10184)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================