Metamenu

Effective results for Nitrosomonas sp. AL212 (eggnog40)

Summary

Number of putative secreted proteins: 180
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 19 eukaryotic-like domains, contained in 180 proteins (130 high, 50 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
153948.NAL212_0318PF00665 PF01695mitochondrial; (mitochondrial)
153948.NAL212_2644PF05598 (PF01609)(ER)
153948.NAL212_0743PF05598 (PF01609)(ER)
153948.NAL212_1973PF13936 PF00665(mitochondrial); (plastid)
153948.NAL212_2475PF13936 PF00665(mitochondrial); (plastid)
153948.NAL212_2466PF05598 (PF01609)(ER)
153948.NAL212_1829PF05598 (PF01609)(ER)
153948.NAL212_0600PF13936 PF00665(mitochondrial); (plastid)
153948.NAL212_0366PF13936 PF00665(mitochondrial); (plastid)
153948.NAL212_1493PF05598 (PF01609)(ER)
153948.NAL212_2435PF05598 (PF01609)(ER)
153948.NAL212_2166PF05598 (PF01609)(ER)
153948.NAL212_0922PF05598 (PF01609)(ER)
153948.NAL212_3179PF07250 (PF13415)mitochondrial; (mitochondrial)
153948.NAL212_2661PF13936 PF00665(mitochondrial); (plastid)
153948.NAL212_3163PF13936 PF00665(mitochondrial); (plastid)
153948.NAL212_1875PF05598 (PF01609)(ER)
153948.NAL212_1506PF13936 PF00665(mitochondrial); (plastid)
153948.NAL212_1065PF00665 PF01695mitochondrial; (mitochondrial)
153948.NAL212_1666PF00665 PF01695mitochondrial; (mitochondrial)
153948.NAL212_3034PF00665 PF01695mitochondrial; (mitochondrial)
153948.NAL212_1641PF00665mitochondrial; (mitochondrial)
153948.NAL212_1423PF00665mitochondrial; (mitochondrial)
153948.NAL212_2532PF00665(mitochondrial)
153948.NAL212_1927PF13436ER
153948.NAL212_2317PF05598 (PF01609)(ER)
153948.NAL212_0780PF05598 (PF01609)(ER)
153948.NAL212_2820PF13436ER
153948.NAL212_2648PF00665mitochondrial; (mitochondrial)
153948.NAL212_2251PF00665(mitochondrial)
153948.NAL212_0790PF05598 (PF01609)(ER)
153948.NAL212_0246PF05598 (PF01609)(ER)
153948.NAL212_2278PF13436ER
153948.NAL212_3049PF01695(mitochondrial)
153948.NAL212_0626(PF03092)ER; (ER)
153948.NAL212_0347PF05598 (PF01609)(ER)
153948.NAL212_2597PF00665(mitochondrial)
153948.NAL212_2046PF05598 (PF01609)(ER)
153948.NAL212_3041PF13936(mitochondrial); (plastid)
153948.NAL212_2715PF05598 (PF01609)(ER)
153948.NAL212_1849PF05598 (PF01609)(ER)
153948.NAL212_0571PF07250ER
153948.NAL212_0493PF05598 (PF01609)(ER)
153948.NAL212_2951PF05598 (PF01609)(ER)
153948.NAL212_2401PF05598 (PF01609)(ER)
153948.NAL212_1889PF05598 (PF01609)(ER)
153948.NAL212_2523PF13936 PF00665
153948.NAL212_2524(PF13276) PF00665
153948.NAL212_1640(PF13276) PF00665
153948.NAL212_1420PF13936 PF00665
153948.NAL212_2658PF13936 PF00665
153948.NAL212_2640(PF13276) PF00665
153948.NAL212_2647(PF13276) PF00665
153948.NAL212_1239PF13936 PF00665
153948.NAL212_2270(PF13276) PF00665
153948.NAL212_2470(PF13276) PF00665
153948.NAL212_2052(PF13276) PF00665
153948.NAL212_2469PF13936 PF00665
153948.NAL212_0351PF05598 (PF01609)
153948.NAL212_2609PF13936 PF00665
153948.NAL212_1011PF13936 PF00665
153948.NAL212_2441(PF13276) PF00665
153948.NAL212_2446(PF13276) PF00665
153948.NAL212_2449PF13936 PF00665
153948.NAL212_1764(PF13276) PF00665
153948.NAL212_2437PF05598 (PF01609)
153948.NAL212_2389(PF13276) PF00665
153948.NAL212_2427(PF13276) PF00665
153948.NAL212_2955(PF13276) PF00665
153948.NAL212_2956PF13936 PF00665
153948.NAL212_2889(PF13276) PF00665
153948.NAL212_0314PF13936 PF00665
153948.NAL212_0316(PF13276) PF00665
153948.NAL212_1263PF13936 PF00665
153948.NAL212_1267(PF13276) PF00665
153948.NAL212_3023PF13936 PF00665
153948.NAL212_2212PF13936 PF00665
153948.NAL212_1311(PF00685)(plastid)
153948.NAL212_3039PF13936 PF00665
153948.NAL212_1419(PF13276) PF00665
153948.NAL212_2684PF13936 PF00665
153948.NAL212_2522(PF01527)
153948.NAL212_2238PF05598
153948.NAL212_2839PF01839
153948.NAL212_2837PF01839
153948.NAL212_0871(PF00101)
153948.NAL212_2650(PF01163)
153948.NAL212_2657(PF01527)
153948.NAL212_2533(PF03050)
153948.NAL212_2531PF01695
153948.NAL212_3010PF05598
153948.NAL212_2004PF01839
153948.NAL212_2641(PF01527)
153948.NAL212_2646(PF01527)
153948.NAL212_2252PF01695
153948.NAL212_0250PF12762
153948.NAL212_0258(PF03050)
153948.NAL212_1238(PF01527)
153948.NAL212_2486PF12762
153948.NAL212_0635PF05598
153948.NAL212_0336(PF03050)
153948.NAL212_2660PF01695
153948.NAL212_1974PF01695
153948.NAL212_2474PF01695
153948.NAL212_2053(PF01527)
153948.NAL212_2054PF01695
153948.NAL212_2727PF05598
153948.NAL212_2269(PF01527)
153948.NAL212_3052PF01695
153948.NAL212_3051(PF03050)
153948.NAL212_2461(PF01163)
153948.NAL212_2598PF01695
153948.NAL212_1742PF12762
153948.NAL212_1363PF12762
153948.NAL212_2862(PF12483)
153948.NAL212_0359(PF03050)
153948.NAL212_0601PF01695
153948.NAL212_1770(PF01527)
153948.NAL212_0365PF01695
153948.NAL212_1010(PF01527)
153948.NAL212_2442(PF01527)
153948.NAL212_2447(PF01527)
153948.NAL212_2444PF01695
153948.NAL212_0561PF12762
153948.NAL212_1497(PF03050)
153948.NAL212_1382PF12762
153948.NAL212_2848PF01839
153948.NAL212_2847PF01839
153948.NAL212_2846PF01839
153948.NAL212_2845PF01839
153948.NAL212_2844PF01839
153948.NAL212_2842PF01839
153948.NAL212_2841PF12762
153948.NAL212_2840PF01839
153948.NAL212_1541PF12762
153948.NAL212_2624PF12762
153948.NAL212_2436PF13936
153948.NAL212_2430PF01695
153948.NAL212_2388(PF01527)
153948.NAL212_2380(PF03050)
153948.NAL212_1003(PF01527)
153948.NAL212_2943(PF00101)
153948.NAL212_2890(PF01527)
153948.NAL212_1203(PF00685)
153948.NAL212_2428(PF01527)
153948.NAL212_3145PF05598
153948.NAL212_2559(PF01527)
153948.NAL212_0547(PF01527)
153948.NAL212_0492PF05598
153948.NAL212_1639(PF01527)
153948.NAL212_2957(PF01527)
153948.NAL212_2777PF12762
153948.NAL212_1866(PF01527)
153948.NAL212_1732PF05598
153948.NAL212_0730(PF00685)
153948.NAL212_1294(PF03050)
153948.NAL212_1293PF12762
153948.NAL212_2408PF12762
153948.NAL212_2404(PF03050)
153948.NAL212_3164PF01695
153948.NAL212_1877(PF03050)
153948.NAL212_0589(PF01527)
153948.NAL212_1505PF01695
153948.NAL212_0315(PF01527)
153948.NAL212_1266(PF01527)
153948.NAL212_1264(PF01527)
153948.NAL212_3119PF12762
153948.NAL212_1087PF01839
153948.NAL212_1088PF01839
153948.NAL212_3024(PF01527)
153948.NAL212_1884PF05598
153948.NAL212_2213PF01839
153948.NAL212_0592(PF01527)
153948.NAL212_1409(PF03050)
153948.NAL212_1315PF12762
153948.NAL212_1318(PF00685)
153948.NAL212_0213PF01839
153948.NAL212_1897(PF01527)
153948.NAL212_1418(PF13875)
153948.NAL212_1309(PF00685)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================