Metamenu

Effective results for Nocardia cyriacigeorgica GUH-2 (eggnog40)

Summary

Number of putative secreted proteins: 184
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 27 eukaryotic-like domains, contained in 184 proteins (3 high, 181 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
1127134.NOCYR_0140(PF08310) (PF00756)(mitochondrial)
1127134.NOCYR_1522(PF08326) (PF01039)mitochondrial; (mitochondrial)
1127134.NOCYR_2261(PF00756)(ER)
1127134.NOCYR_4959(PF03583)(mitochondrial)
1127134.NOCYR_1219(PF02470)ER
1127134.NOCYR_1217(PF02405)(mitochondrial)
1127134.NOCYR_2244(PF00756)ER
1127134.NOCYR_0294(PF01872)ER
1127134.NOCYR_0295(PF01872)ER
1127134.NOCYR_0126(PF08310)ER
1127134.NOCYR_1985(PF01674)ER
1127134.NOCYR_1233(PF02470)(mitochondrial); mitochondrial
1127134.NOCYR_1232(PF02470)ER
1127134.NOCYR_1982(PF13564)ER
1127134.NOCYR_2514(PF08310)mitochondrial; (mitochondrial)
1127134.NOCYR_2703(PF00756)mitochondrial
1127134.NOCYR_4284(PF00756)ER
1127134.NOCYR_2147(PF01872)(ER)
1127134.NOCYR_0424(PF01674)ER
1127134.NOCYR_4890(PF02470)ER
1127134.NOCYR_4891(PF02470)(ER)
1127134.NOCYR_4892(PF02470)ER
1127134.NOCYR_4893(PF02470)mitochondrial
1127134.NOCYR_4894(PF02405)(mitochondrial)
1127134.NOCYR_4895(PF02405)mitochondrial; (mitochondrial)
1127134.NOCYR_0183(PF00756)mitochondrial
1127134.NOCYR_1073(PF04138)(mitochondrial)
1127134.NOCYR_0021(PF01872)ER
1127134.NOCYR_4852(PF03583)ER
1127134.NOCYR_5313(PF13810)(mitochondrial)
1127134.NOCYR_4834(PF02470)ER; (ER)
1127134.NOCYR_4835(PF02405)(mitochondrial)
1127134.NOCYR_4832(PF02470)mitochondrial
1127134.NOCYR_4833(PF02470)ER
1127134.NOCYR_4830(PF02470)ER
1127134.NOCYR_4831(PF02470)ER
1127134.NOCYR_5320(PF03583)(mitochondrial); mitochondrial
1127134.NOCYR_0548(PF02405)mitochondrial
1127134.NOCYR_0549(PF02470)(mitochondrial)
1127134.NOCYR_4599(PF13564)ER
1127134.NOCYR_0763(PF00756)ER
1127134.NOCYR_1548(PF02470)ER
1127134.NOCYR_1544(PF02470)ER
1127134.NOCYR_1546(PF02470)mitochondrial
1127134.NOCYR_1543(PF02405)(mitochondrial)
1127134.NOCYR_5530(PF02405)mitochondrial
1127134.NOCYR_2037(PF13564)ER
1127134.NOCYR_0551(PF02470)(ER); ER
1127134.NOCYR_0550(PF02470)ER
1127134.NOCYR_0553(PF02470)ER
1127134.NOCYR_0552(PF02470)ER
1127134.NOCYR_0554(PF02470)ER
1127134.NOCYR_0577(PF00756)ER
1127134.NOCYR_1236(PF02405)(mitochondrial)
1127134.NOCYR_1231(PF02470)mitochondrial
1127134.NOCYR_1230(PF02470)ER
1127134.NOCYR_5136(PF02405)mitochondrial
1127134.NOCYR_5052(PF03583)ER; (ER)
1127134.NOCYR_4689(PF03583)mitochondrial; (mitochondrial)
1127134.NOCYR_5032(PF08310)ER
1127134.NOCYR_2687(PF03583)ER
1127134.NOCYR_2686(PF03583)mitochondrial; (mitochondrial)
1127134.NOCYR_2684(PF03583)ER
1127134.NOCYR_4168(PF03583)ER
1127134.NOCYR_1220(PF02470)(mitochondrial)
1127134.NOCYR_1221(PF02470)ER
1127134.NOCYR_1222(PF02470)mitochondrial
1127134.NOCYR_1223(PF02470)ER
1127134.NOCYR_3591(PF00756)ER
1127134.NOCYR_2757(PF01674)ER
1127134.NOCYR_4109(PF00756)ER
1127134.NOCYR_5227(PF13810)ER
1127134.NOCYR_0139(PF00756)(mitochondrial)
1127134.NOCYR_0137(PF00756)ER
1127134.NOCYR_5464(PF03583)(mitochondrial)
1127134.NOCYR_4889(PF02470)ER
1127134.NOCYR_4888(PF02470)ER
1127134.NOCYR_5308(PF13810)ER
1127134.NOCYR_2323(PF03583)ER
1127134.NOCYR_5529(PF02470)(ER)
1127134.NOCYR_5528(PF02470)ER
1127134.NOCYR_5526(PF02470)ER
1127134.NOCYR_5524(PF02470)ER
1127134.NOCYR_4380(PF02470)ER
1127134.NOCYR_4526(PF00756)ER
1127134.NOCYR_2693(PF00756)ER
1127134.NOCYR_2696(PF01674)ER; (ER)
1127134.NOCYR_1259(PF03583)ER
1127134.NOCYR_0651(PF17048)ER; (mitochondrial)
1127134.NOCYR_0168(PF04138)(ER)
1127134.NOCYR_3902(PF04138)(plastid)
1127134.NOCYR_4564(PF08310)(ER)
1127134.NOCYR_1234(PF02470)(plastid)
1127134.NOCYR_3304(PF14232) (PF14231)
1127134.NOCYR_2179(PF13564)(plastid)
1127134.NOCYR_4925(PF04138)(plastid)
1127134.NOCYR_5547(PF13810)(mitochondrial)
1127134.NOCYR_4829(PF02470)(mitochondrial)
1127134.NOCYR_2491(PF00756)(plastid)
1127134.NOCYR_5525(PF02470)(plastid)
1127134.NOCYR_3520(PF14232) (PF14231)
1127134.NOCYR_4530(PF13564)(mitochondrial)
1127134.NOCYR_1064(PF04138)
1127134.NOCYR_1687(PF01872)
1127134.NOCYR_1689(PF04138)
1127134.NOCYR_5346(PF03583)
1127134.NOCYR_1216(PF02405)
1127134.NOCYR_0489(PF13452)
1127134.NOCYR_4565(PF03405)
1127134.NOCYR_0462(PF13452)
1127134.NOCYR_4113(PF01039)
1127134.NOCYR_3821(PF01756)
1127134.NOCYR_0146(PF01039)
1127134.NOCYR_5322(PF01872)
1127134.NOCYR_4134(PF01039)
1127134.NOCYR_2555(PF07993)
1127134.NOCYR_1602(PF01039)
1127134.NOCYR_1603(PF01674)
1127134.NOCYR_5473PF05007
1127134.NOCYR_0986(PF13452)
1127134.NOCYR_2820(PF07993)
1127134.NOCYR_0686(PF01039)
1127134.NOCYR_2781(PF13452)
1127134.NOCYR_4836(PF02405)
1127134.NOCYR_0251(PF01872)
1127134.NOCYR_2298(PF13564)
1127134.NOCYR_1526(PF03583)
1127134.NOCYR_1542(PF02405)
1127134.NOCYR_3496(PF01674)
1127134.NOCYR_5531(PF02405)
1127134.NOCYR_1973(PF13452)
1127134.NOCYR_1703(PF01872)
1127134.NOCYR_5287(PF01872)
1127134.NOCYR_1317(PF05088)
1127134.NOCYR_4098(PF07993)
1127134.NOCYR_0755(PF07993)
1127134.NOCYR_0754(PF00756)
1127134.NOCYR_1237(PF02405)
1127134.NOCYR_1235(PF02470)
1127134.NOCYR_5135(PF02405)
1127134.NOCYR_4982PF08213not used
1127134.NOCYR_2688(PF13452)
1127134.NOCYR_1266(PF08354)
1127134.NOCYR_4145(PF01872)
1127134.NOCYR_2275(PF01039)
1127134.NOCYR_5175(PF01039)
1127134.NOCYR_4906(PF13452)
1127134.NOCYR_1427(PF07993)
1127134.NOCYR_2526PF12765
1127134.NOCYR_5238(PF01872)
1127134.NOCYR_0619(PF03405)
1127134.NOCYR_4579(PF14832)
1127134.NOCYR_1057(PF01039)
1127134.NOCYR_5226(PF13452)
1127134.NOCYR_3363(PF00755)
1127134.NOCYR_0138(PF00756)
1127134.NOCYR_4128(PF00756)
1127134.NOCYR_0156(PF04138)
1127134.NOCYR_3615(PF03583)
1127134.NOCYR_4185(PF03583)
1127134.NOCYR_1638(PF03405)
1127134.NOCYR_3897(PF01872)
1127134.NOCYR_4820(PF01039)
1127134.NOCYR_0204(PF05088)
1127134.NOCYR_1792(PF00756)
1127134.NOCYR_2170(PF04138)
1127134.NOCYR_3624(PF01872)
1127134.NOCYR_1673(PF01039)
1127134.NOCYR_0723(PF01872)
1127134.NOCYR_0728(PF01872)
1127134.NOCYR_2960(PF00045)
1127134.NOCYR_0703(PF01872)
1127134.NOCYR_5527(PF02470)
1127134.NOCYR_2532(PF01872)
1127134.NOCYR_0547(PF02405)
1127134.NOCYR_1388(PF01872)
1127134.NOCYR_1380(PF05088)
1127134.NOCYR_2599(PF03583)
1127134.NOCYR_2044(PF03583)
1127134.NOCYR_3318(PF01872)
1127134.NOCYR_2558(PF01756)
1127134.NOCYR_2690(PF01039)
1127134.NOCYR_2692(PF03405)
1127134.NOCYR_2694(PF13452)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================