Metamenu

Effective results for Frankia sp. CcI3 (eggnog40)

Summary

Number of putative secreted proteins: 184
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 32 eukaryotic-like domains, contained in 184 proteins (63 high, 121 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
106370.Francci3_3259(PF02156)ER
106370.Francci3_1119PF01609(ER)
106370.Francci3_4085(PF00239)(mitochondrial)
106370.Francci3_1906(PF13579)(mitochondrial)
106370.Francci3_2061(PF13565)mitochondrial; (mitochondrial)
106370.Francci3_2121PF01609(ER)
106370.Francci3_2058PF01609mitochondrial
106370.Francci3_1104(PF03050)(mitochondrial)
106370.Francci3_1108PF01609(ER); (plastid)
106370.Francci3_0961PF13359 (PF13613)mitochondrial
106370.Francci3_1967(PF13565)(mitochondrial)
106370.Francci3_3887(PF00406)(mitochondrial)
106370.Francci3_0603(PF00406)(mitochondrial)
106370.Francci3_4450(PF00648)ER
106370.Francci3_0569(PF00298) (PF03946)(mitochondrial)
106370.Francci3_1166PF02026(mitochondrial)
106370.Francci3_0010(PF13579)mitochondrial
106370.Francci3_1018(PF13565)(mitochondrial)
106370.Francci3_0392PF01609(ER)
106370.Francci3_3385PF01609mitochondrial
106370.Francci3_2884(PF03050)(mitochondrial); (plastid)
106370.Francci3_2084(PF13565)(mitochondrial)
106370.Francci3_2088(PF00239)(mitochondrial)
106370.Francci3_1872(PF13565)mitochondrial; (mitochondrial)
106370.Francci3_2572(PF03050)ER
106370.Francci3_4345(PF13579)(ER)
106370.Francci3_1060(PF02156)mitochondrial
106370.Francci3_1304(PF13579)(mitochondrial)
106370.Francci3_2025PF01609(mitochondrial)
106370.Francci3_2531PF13359 (PF13613)
106370.Francci3_4155PF01609(plastid)
106370.Francci3_0080(PF13676)(mitochondrial)
106370.Francci3_3671(PF02156)(mitochondrial)
106370.Francci3_4024(PF03050)(plastid)
106370.Francci3_1237(PF13565)(mitochondrial)
106370.Francci3_2062PF13359 (PF13613)
106370.Francci3_3990PF01609(plastid)
106370.Francci3_3531(PF05147) (PF01135)
106370.Francci3_2708PF01609(plastid)
106370.Francci3_4067PF01609(plastid)
106370.Francci3_2712PF01609(plastid)
106370.Francci3_2363(PF00239)(plastid)
106370.Francci3_0876(PF13676)plastid
106370.Francci3_0143PF13359 (PF13613)
106370.Francci3_0120PF13359 (PF13613)
106370.Francci3_0122PF01609(plastid)
106370.Francci3_4116(PF00298) (PF03946)
106370.Francci3_2695(PF00102)(plastid)
106370.Francci3_1783PF13359 (PF13613)
106370.Francci3_3929(PF02156)
106370.Francci3_4220PF01609
106370.Francci3_0671(PF00239)
106370.Francci3_0672PF01609
106370.Francci3_4178(PF08491)
106370.Francci3_2683(PF00239)
106370.Francci3_2330PF01609
106370.Francci3_2023(PF10979)
106370.Francci3_4124(PF00239)
106370.Francci3_2530PF13359
106370.Francci3_2533(PF03050)
106370.Francci3_3316(PF01135)
106370.Francci3_3314(PF05147)
106370.Francci3_3313PF01609
106370.Francci3_0115PF01609
106370.Francci3_3867(PF01329)
106370.Francci3_0205(PF05147)
106370.Francci3_0207(PF02156)
106370.Francci3_4218PF01609
106370.Francci3_4217PF13359
106370.Francci3_4213PF01609
106370.Francci3_4211PF01609
106370.Francci3_2529(PF00239)
106370.Francci3_2522(PF03050)
106370.Francci3_3011(PF00406)
106370.Francci3_0477PF08213not used
106370.Francci3_0276(PF13676)
106370.Francci3_0277(PF03050)
106370.Francci3_0278(PF14216)
106370.Francci3_4206(PF01959)
106370.Francci3_0300PF01609
106370.Francci3_0893(PF00239)
106370.Francci3_1922(PF03050)
106370.Francci3_2799PF01609
106370.Francci3_0881(PF03050)
106370.Francci3_1684(PF00239)
106370.Francci3_2078(PF03050)
106370.Francci3_2073(PF03050)
106370.Francci3_2109(PF00239)
106370.Francci3_0414PF02026
106370.Francci3_4089(PF01329)
106370.Francci3_1236(PF01184)
106370.Francci3_1128(PF01135)
106370.Francci3_1126(PF05147)
106370.Francci3_1122PF13359
106370.Francci3_2481PF01609
106370.Francci3_2241(PF01184)
106370.Francci3_2069(PF01959)
106370.Francci3_0402PF01609
106370.Francci3_3449(PF13676)
106370.Francci3_0248PF13359
106370.Francci3_3997(PF05147)
106370.Francci3_3998PF01609
106370.Francci3_4186(PF13676)
106370.Francci3_2276(PF03015)
106370.Francci3_4467(PF01135)
106370.Francci3_2123(PF13613)
106370.Francci3_2057(PF03050)
106370.Francci3_2052PF01609
106370.Francci3_2721(PF00239)
106370.Francci3_2051(PF03050)
106370.Francci3_3458(PF02156)
106370.Francci3_3989(PF00239)
106370.Francci3_0505(PF03050)
106370.Francci3_0293(PF02156)
106370.Francci3_0294(PF04505)
106370.Francci3_0295(PF04505)
106370.Francci3_0988(PF08326)
106370.Francci3_1109PF01609
106370.Francci3_0960PF13359
106370.Francci3_1562(PF13579)
106370.Francci3_1962PF01609
106370.Francci3_2467PF01609
106370.Francci3_2264(PF00239)
106370.Francci3_1815(PF01329)
106370.Francci3_1819(PF01135)
106370.Francci3_2130PF01609
106370.Francci3_1776PF01609
106370.Francci3_1950PF01609
106370.Francci3_1951(PF13676)
106370.Francci3_1822(PF05147)
106370.Francci3_1826(PF01329)
106370.Francci3_1828(PF01329)
106370.Francci3_2707PF01609
106370.Francci3_2704PF01609
106370.Francci3_3431(PF00239)
106370.Francci3_3439(PF13676)
106370.Francci3_3091(PF04455)
106370.Francci3_1763PF01609
106370.Francci3_1167(PF13579)
106370.Francci3_2841(PF06414)
106370.Francci3_4145(PF03050)
106370.Francci3_0393(PF00239)
106370.Francci3_1623(PF16485)
106370.Francci3_2941PF01609
106370.Francci3_4120PF01609
106370.Francci3_2436(PF01135)
106370.Francci3_2891(PF00239)
106370.Francci3_2546PF13359
106370.Francci3_2540PF01609
106370.Francci3_2098(PF00239)
106370.Francci3_4000(PF03050)
106370.Francci3_3365(PF05711)
106370.Francci3_3362(PF13579)
106370.Francci3_0144(PF03050)
106370.Francci3_4006PF01609
106370.Francci3_2552PF13359
106370.Francci3_2551(PF00239)
106370.Francci3_2373(PF00239)
106370.Francci3_2776(PF00239)
106370.Francci3_2080PF01609
106370.Francci3_0155(PF03050)
106370.Francci3_0151PF01609
106370.Francci3_3599(PF10979)
106370.Francci3_1510(PF13676)
106370.Francci3_1511(PF13676)
106370.Francci3_1993(PF01184)
106370.Francci3_1864(PF03050)
106370.Francci3_2183PF01609
106370.Francci3_1728PF01609
106370.Francci3_1189PF01609
106370.Francci3_1184(PF13579)
106370.Francci3_1291(PF05711)
106370.Francci3_4115PF01609
106370.Francci3_2358(PF06414)
106370.Francci3_2351(PF00239)
106370.Francci3_2995(PF13676)
106370.Francci3_3339(PF10979)
106370.Francci3_3244(PF01135)
106370.Francci3_0910(PF00239)
106370.Francci3_1063(PF00755)
106370.Francci3_4164(PF00239)
106370.Francci3_2034(PF01135)
106370.Francci3_2037PF01609
106370.Francci3_2032(PF05147)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================