Effective results for Sulfuricurvum kujiense DSM 16994 (refseq)
Summary
Number of putative secreted proteins: 112
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 112 proteins (2 high, 110 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| WP_013459276.1 | (PF00990) | ER | |||
| WP_013461285.1 | (PF00990) | ER | |||
| WP_013459573.1 | (PF00990) | (mitochondrial) | |||
| WP_013459336.1 | (PF00990) | (ER) | |||
| WP_013459696.1 | (PF00990) | (mitochondrial) | |||
| WP_013460515.1 | (PF00990) | (ER) | |||
| WP_013460600.1 | (PF00990) | (ER) | |||
| WP_013461270.1 | (PF02516) | (ER) | |||
| WP_041666731.1 | (PF13237) | mitochondrial | |||
| WP_013460365.1 | (PF00990) | ER | |||
| WP_013460353.1 | (PF00990) | ER; (ER) | |||
| WP_049766972.1 | (PF00990) | ER | |||
| WP_013459522.1 | (PF00990) | ER | |||
| WP_013460148.1 | (PF00990) | ER | |||
| WP_013461322.1 | (PF13237) | mitochondrial | |||
| WP_013449879.1 | (PF13237) | mitochondrial | |||
| WP_013459263.1 | (PF00990) | ER | |||
| WP_013460333.1 | (PF00990) | ER | |||
| WP_013459511.1 | (PF00990) | ER | |||
| WP_013459961.1 | (PF00990) | ER | |||
| WP_013458986.1 | (PF00990) | ER | |||
| WP_013460341.1 | (PF00990) | ER | |||
| WP_013461122.1 | (PF00990) | ER | |||
| WP_013458957.1 | (PF00990) | ER | |||
| WP_013460516.1 | (PF00990) | ER | |||
| WP_013461308.1 | (PF00990) | ER | |||
| WP_013460360.1 | (PF00990) | ER | |||
| WP_013459521.1 | (PF00990) | ER | |||
| WP_013461055.1 | (PF00990) | ER | |||
| WP_013460927.1 | (PF00990) | ER | |||
| WP_013459083.1 | (PF00990) | ER | |||
| WP_013459909.1 | (PF00990) | ER | |||
| WP_013459788.1 | (PF00990) | ER | |||
| WP_013460477.1 | (PF00990) | ER | |||
| WP_013459510.1 | (PF00990) | ER | |||
| WP_013460150.1 | (PF00990) | mitochondrial | |||
| WP_013459568.1 | (PF00990) | ER | |||
| WP_013460364.1 | (PF00990) | ER | |||
| WP_013459545.1 | (PF00990) | ER | |||
| WP_013460054.1 | (PF00990) | (ER) | |||
| WP_013460402.1 | (PF00990) | (ER) | |||
| WP_013461327.1 | (PF13237) | (mitochondrial) | |||
| WP_013459699.1 | (PF00990) | plastid | |||
| WP_049766971.1 | (PF00990) | ||||
| WP_013460745.1 | (PF07693) | ||||
| WP_013460184.1 | (PF00990) | ||||
| WP_013460494.1 | (PF00990) | ||||
| WP_013460496.1 | (PF00990) | ||||
| WP_041666867.1 | (PF03054) | ||||
| WP_013460050.1 | (PF03588) | ||||
| WP_013449855.1 | (PF07693) | ||||
| WP_013461383.1 | (PF00990) | ||||
| WP_013460169.1 | (PF00990) | ||||
| WP_013460167.1 | (PF00990) | ||||
| WP_013460179.1 | (PF01871) | ||||
| WP_013460181.1 | (PF00990) | ||||
| WP_013449990.1 | (PF00990) | ||||
| WP_013460521.1 | (PF00990) | ||||
| WP_013460836.1 | (PF00990) | ||||
| WP_049766998.1 | (PF00990) | ||||
| WP_013459134.1 | (PF13237) | ||||
| WP_013460672.1 | PF08312 | ||||
| WP_013460223.1 | (PF00990) | ||||
| WP_013461307.1 | (PF00990) | ||||
| WP_013459593.1 | (PF02943) | ||||
| WP_013460490.1 | (PF00990) | ||||
| WP_013450038.1 | (PF04218) | ||||
| WP_013459817.1 | (PF00990) | ||||
| WP_041667062.1 | (PF00990) | ||||
| WP_013459219.1 | (PF00990) | ||||
| WP_013460551.1 | (PF07693) | ||||
| WP_013459423.1 | (PF00990) | ||||
| WP_013460487.1 | (PF00990) | ||||
| WP_013459045.1 | (PF01871) | ||||
| WP_013460878.1 | (PF00990) | ||||
| WP_049766986.1 | (PF00990) | ||||
| WP_013459122.1 | (PF07693) | ||||
| WP_041666744.1 | (PF01106) | ||||
| WP_013461377.1 | (PF01106) | ||||
| WP_013460637.1 | (PF00990) | ||||
| WP_013460835.1 | (PF00990) | ||||
| WP_013460134.1 | (PF00162) | ||||
| WP_013458945.1 | (PF03054) | ||||
| WP_049767009.1 | (PF11074) | ||||
| WP_013459195.1 | (PF03054) | ||||
| WP_013460381.1 | (PF00990) | ||||
| WP_013450006.1 | (PF03588) | ||||
| WP_013461306.1 | (PF00990) | ||||
| WP_049766968.1 | (PF00990) | ||||
| WP_013461148.1 | (PF01106) | ||||
| WP_013459152.1 | (PF00162) | ||||
| WP_013460311.1 | (PF00990) | ||||
| WP_013460370.1 | (PF00990) | ||||
| WP_013460530.1 | (PF00990) | ||||
| WP_013459525.1 | (PF00990) | ||||
| WP_013460027.1 | (PF00990) | ||||
| WP_013459810.1 | (PF00990) | ||||
| WP_013459258.1 | (PF00990) | ||||
| WP_013460484.1 | (PF00990) | ||||
| WP_041667299.1 | (PF00990) | ||||
| WP_013460819.1 | (PF00990) | ||||
| WP_013449986.1 | (PF00990) | ||||
| WP_013460393.1 | (PF01106) | ||||
| WP_013459540.1 | (PF00990) | ||||
| WP_013459384.1 | (PF00990) | ||||
| WP_013460354.1 | (PF00990) | ||||
| WP_013460787.1 | (PF03588) | ||||
| WP_013458930.1 | (PF12513) | ||||
| WP_013459529.1 | (PF16114) | ||||
| WP_013460664.1 | PF04981 | ||||
| WP_013458869.1 | (PF00990) | ||||
| WP_049766961.1 | (PF00990) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: NO (FDR = 7.2 %)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=GENOTYPE
EMAIL=
==========================================================
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