Metamenu

Effective results for Desulfococcus oleovorans Hxd3 (eggnog40)

Summary

Number of putative secreted proteins: 183
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 33 eukaryotic-like domains, contained in 183 proteins (12 high, 171 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
96561.Dole_2407(PF04055) (PF02310)mitochondrial; (mitochondrial)
96561.Dole_2416(PF04055) (PF02310)(mitochondrial)
96561.Dole_2434(PF04055) (PF02310)(ER)
96561.Dole_2435(PF04055) (PF02310)(ER)
96561.Dole_2433(PF04055) (PF02310)mitochondrial; (mitochondrial)
96561.Dole_1178(PF04055) (PF02310)(mitochondrial)
96561.Dole_3079PF01852ER
96561.Dole_2825(PF00037)ER
96561.Dole_1630(PF13174)ER
96561.Dole_1127(PF13174)ER
96561.Dole_1417(PF13187)(ER)
96561.Dole_0275(PF13431)ER
96561.Dole_0347(PF00037)ER
96561.Dole_2511(PF00037)ER
96561.Dole_2999(PF04055) (PF02310)(ER)
96561.Dole_1501(PF04055)ER
96561.Dole_3105PF01852ER
96561.Dole_0861(PF04055) (PF02310)(plastid)
96561.Dole_0598(PF00430)ER
96561.Dole_3025(PF13174)ER
96561.Dole_0614(PF04055)(ER)
96561.Dole_1522(PF13174)ER
96561.Dole_2363PF01852ER
96561.Dole_2415(PF13431)ER
96561.Dole_2419(PF13431)ER
96561.Dole_2566(PF04055) (PF02310)(plastid)
96561.Dole_0556(PF13187)(mitochondrial)
96561.Dole_0311(PF00037)ER
96561.Dole_3179(PF03162)ER
96561.Dole_2429(PF01875)ER
96561.Dole_0631(PF00137)(ER)
96561.Dole_0804(PF00430)ER
96561.Dole_0803(PF00430)(ER)
96561.Dole_1318PF01852ER
96561.Dole_2830(PF13237)(ER)
96561.Dole_2208(PF13174)ER
96561.Dole_1813(PF13173)(mitochondrial)
96561.Dole_0217PF01852ER
96561.Dole_1159(PF13237) (PF00037)(ER)
96561.Dole_1742(PF04055) (PF02310)(ER)
96561.Dole_0986(PF04055) (PF02310)(ER)
96561.Dole_0187(PF04055)(mitochondrial)
96561.Dole_2628(PF04055) (PF02310)
96561.Dole_3132(PF13237)(mitochondrial)
96561.Dole_2192(PF13237) (PF04055)
96561.Dole_2771(PF01869)(plastid)
96561.Dole_0599(PF00430)(ER)
96561.Dole_0829(PF13173)(ER)
96561.Dole_2428(PF04055) (PF02310)
96561.Dole_2431(PF04055)(ER)
96561.Dole_0800(PF00137)(ER)
96561.Dole_0802(PF00137)(ER)
96561.Dole_1740(PF00037)(ER)
96561.Dole_3058(PF04055) (PF02310)
96561.Dole_2873(PF04055) (PF02310)
96561.Dole_2472(PF04055) (PF02310)
96561.Dole_2473(PF04055) (PF02310)
96561.Dole_2647(PF02915)(mitochondrial)
96561.Dole_0748(PF00037)
96561.Dole_2665(PF03692)
96561.Dole_0251(PF02384)
96561.Dole_0253(PF00091)
96561.Dole_0255(PF00091)
96561.Dole_2725(PF02384)
96561.Dole_1110(PF02310)
96561.Dole_0644(PF13173)
96561.Dole_0061(PF02310)
96561.Dole_2536(PF13237)
96561.Dole_2621(PF03692)
96561.Dole_1638(PF04055)
96561.Dole_1259(PF02384)
96561.Dole_1255(PF04193)
96561.Dole_0893(PF01869)
96561.Dole_0890(PF04055)
96561.Dole_0894(PF01869)
96561.Dole_0097(PF04055)
96561.Dole_0276(PF02384)
96561.Dole_0079(PF02310)
96561.Dole_3018(PF04055)
96561.Dole_3231(PF04055)
96561.Dole_1393(PF00037)
96561.Dole_0281(PF04098)
96561.Dole_3137(PF13173)
96561.Dole_2513(PF04055)
96561.Dole_2355(PF04055)
96561.Dole_2608(PF01073)
96561.Dole_1890(PF04055)
96561.Dole_1893(PF04055)
96561.Dole_2776(PF01869)
96561.Dole_2772(PF01869)
96561.Dole_1271(PF04055)
96561.Dole_1272(PF04055)
96561.Dole_1474(PF13237)
96561.Dole_0299(PF01875)
96561.Dole_1505(PF03692)
96561.Dole_0905(PF13455)
96561.Dole_0456(PF13237)
96561.Dole_2183(PF02915)
96561.Dole_2188(PF02310)
96561.Dole_2613(PF02915)
96561.Dole_2508PF13911
96561.Dole_2761(PF04055)
96561.Dole_1264PF12873
96561.Dole_1261(PF02384)
96561.Dole_0117(PF00037)
96561.Dole_3022(PF00037)
96561.Dole_3023(PF04055)
96561.Dole_3119(PF13187)
96561.Dole_3115(PF13431)
96561.Dole_2406PF03214
96561.Dole_2977(PF13173)
96561.Dole_2888(PF03692)
96561.Dole_0105(PF03692)
96561.Dole_1693(PF12646)
96561.Dole_0589(PF00037)
96561.Dole_0610PF12349
96561.Dole_0035(PF13174)
96561.Dole_1524(PF04055)
96561.Dole_0440(PF00037)
96561.Dole_3161(PF01869)
96561.Dole_2140(PF04055)
96561.Dole_2964(PF02310)
96561.Dole_2967(PF02943)
96561.Dole_2095(PF02384)
96561.Dole_2569(PF04055)
96561.Dole_2782(PF00091)
96561.Dole_1192(PF02527)
96561.Dole_1198(PF04055)
96561.Dole_0823(PF02384)
96561.Dole_1843(PF13173)
96561.Dole_1841(PF13173)
96561.Dole_1536(PF02915)
96561.Dole_2311(PF04055)
96561.Dole_2955(PF13173)
96561.Dole_2958(PF02310)
96561.Dole_0497(PF04055)
96561.Dole_0306(PF13237)
96561.Dole_3141(PF02384)
96561.Dole_2942(PF04193)
96561.Dole_2236(PF02384)
96561.Dole_2548(PF00037)
96561.Dole_2432(PF02310)
96561.Dole_1319PF13911
96561.Dole_1223(PF04055)
96561.Dole_1225(PF04055)
96561.Dole_0577(PF00037)
96561.Dole_0576(PF00037)
96561.Dole_2680(PF00958)
96561.Dole_0560(PF13187)
96561.Dole_0561(PF13187)
96561.Dole_0966(PF00958)
96561.Dole_0964(PF04055)
96561.Dole_0365(PF04055)
96561.Dole_0219(PF04055)
96561.Dole_3188(PF04055)
96561.Dole_2925(PF02384)
96561.Dole_2855(PF13174)
96561.Dole_2581PF01852
96561.Dole_2859(PF04055)
96561.Dole_1874(PF00037)
96561.Dole_1807(PF04055)
96561.Dole_0682(PF04055)
96561.Dole_0997(PF13187)
96561.Dole_0173(PF04055)
96561.Dole_1480(PF04055)
96561.Dole_2261(PF02915)
96561.Dole_2461(PF04055)
96561.Dole_2719PF05028
96561.Dole_1168(PF13237)
96561.Dole_1749(PF04055)
96561.Dole_0984(PF12038)
96561.Dole_0437(PF03692)
96561.Dole_0181(PF00037)
96561.Dole_3055(PF02915)
96561.Dole_2276(PF00037)
96561.Dole_2011(PF01073)
96561.Dole_1000(PF13187)
96561.Dole_1590(PF13187)
96561.Dole_0404(PF02527)
96561.Dole_0407(PF04055)
96561.Dole_0539(PF03692)
96561.Dole_0241(PF11074)
96561.Dole_2063(PF13187)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================