Effective results for Prochlorococcus marinus str. MIT 9211 (eggnog40)

Summary

Number of putative secreted proteins: 107
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 86 eukaryotic-like domains, contained in 107 proteins (14 high, 93 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
93059.P9211_10161				(PF05996)	ER; (ER)
93059.P9211_00711				(PF07444)	ER
93059.P9211_18421				(PF16166)	ER
93059.P9211_02601				(PF07444)	ER
93059.P9211_05081				(PF13326)	mitochondrial
93059.P9211_05741				(PF11460)	ER
93059.P9211_02501				(PF01716)	ER
93059.P9211_17041				(PF12046)	ER
93059.P9211_03751				(PF00283)	ER
93059.P9211_17701				(PF01737)	ER
93059.P9211_00051				PF10579	(ER)
93059.P9211_12991				(PF12617)	(mitochondrial)
93059.P9211_05001				(PF11016)	ER
93059.P9211_08991				(PF11152)	ER
93059.P9211_07251				(PF07082)	(mitochondrial)
93059.P9211_04691				(PF02507)	ER
93059.P9211_10881				(PF01789)	ER
93059.P9211_03501				PF00421	(mitochondrial)
93059.P9211_02801				(PF12600)	(ER)
93059.P9211_17761				(PF04481)	(mitochondrial)
93059.P9211_12111				PF02468	ER; not used
93059.P9211_00701				(PF06596)	ER; not used
93059.P9211_03871				(PF08853)	(ER)
93059.P9211_02991				(PF02533)	ER; not used
93059.P9211_04621				(PF16639) (PF01333)
93059.P9211_03231				(PF00284) (PF00283)
93059.P9211_01261				(PF05421)	(plastid)
93059.P9211_02791				(PF02532)	ER; not used
93059.P9211_02541				(PF04483)	(mitochondrial)
93059.P9211_06641				(PF00504)	(ER); not used
93059.P9211_02781				PF02468	ER; not used
93059.P9211_04681				(PF01701)	ER; not used
93059.P9211_08431				(PF11264)	(mitochondrial)
93059.P9211_05861				(PF06298)	ER; not used
93059.P9211_14531				PF00421
93059.P9211_10191				(PF11347)
93059.P9211_15661				(PF11805)
93059.P9211_11571				PF00421
93059.P9211_08561				(PF10693)
93059.P9211_12281				(PF08041)	not used
93059.P9211_09711				(PF12527)
93059.P9211_07001				(PF11947)
93059.P9211_16401				(PF00223)
93059.P9211_03651				(PF02427)
93059.P9211_03491				(PF01405)	not used
93059.P9211_03721				(PF01744)
93059.P9211_03261				(PF01788)
93059.P9211_02421				(PF10063)
93059.P9211_14281				PF00421
93059.P9211_11631				PF00421
93059.P9211_07801				(PF12049)
93059.P9211_09081				(PF04483)
93059.P9211_03251				PF02419	not used
93059.P9211_09511				(PF13911)
93059.P9211_11601				PF00421
93059.P9211_15381				(PF13475)
93059.P9211_14391				(PF08854)
93059.P9211_01241				(PF12095)
93059.P9211_09181				(PF11210)
93059.P9211_16391				(PF00223)
93059.P9211_09451				(PF06799)
93059.P9211_03241				(PF00283)	not used
93059.P9211_09521				PF00421
93059.P9211_17281				(PF11623)
93059.P9211_18491				(PF00862)
93059.P9211_18031				(PF01947)
93059.P9211_09661				(PF12452)
93059.P9211_07131				(PF11282)
93059.P9211_11661				(PF00504)	not used
93059.P9211_08551				(PF12159)
93059.P9211_01041				(PF00504)	not used
93059.P9211_02771				(PF00737)
93059.P9211_16981				(PF02531)
93059.P9211_16181				(PF11998)
93059.P9211_16451				(PF00796)	not used
93059.P9211_13341				(PF13355)
93059.P9211_06101				(PF09493)
93059.P9211_12341				PF00421
93059.P9211_16061				(PF04983)
93059.P9211_08781				(PF09353)
93059.P9211_17131				(PF05996)
93059.P9211_07301				(PF09493)
93059.P9211_13791				(PF11317)
93059.P9211_15401				(PF13455)
93059.P9211_16051				(PF04983)
93059.P9211_08681				(PF11360)
93059.P9211_03631				(PF12899)
93059.P9211_15361				(PF13475)
93059.P9211_12321				(PF02392)
93059.P9211_16821				(PF10999)
93059.P9211_07741				(PF11833)
93059.P9211_02861				(PF11378)
93059.P9211_13681				(PF00504)
93059.P9211_01361				(PF11910)
93059.P9211_01611				(PF11371)
93059.P9211_17141				(PF05996)
93059.P9211_11321				(PF02529)	not used
93059.P9211_16791				(PF11909)
93059.P9211_15931				(PF11341)
93059.P9211_01601				(PF10664)
93059.P9211_09721				(PF09419)
93059.P9211_15591				(PF04839)
93059.P9211_08411				PF03742	not used
93059.P9211_13841				(PF08855)
93059.P9211_00721				(PF00504)
93059.P9211_07351				PF00421
93059.P9211_16461				(PF02605)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================