Metamenu

Effective results for Pseudovibrio sp. FO-BEG1 (eggnog40)

Summary

Number of putative secreted proteins: 207
- Predicted by T4SEpre: 183
- Predicted by EffectiveELD: 21 eukaryotic-like domains, contained in 65 proteins (12 high, 53 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
911045.PSE_1477+(ER)
911045.PSE_1968+(mitochondrial); (plastid)
911045.PSE_1189(PF02028)ER
911045.PSE_2053+ER
911045.PSE_0571+ER
911045.PSE_2993(PF14099)ER
911045.PSE_3808+mitochondrial
911045.PSE_2678+ER
911045.PSE_1655+ER
911045.PSE_1652+ER
911045.PSE_3058+mitochondrial
911045.PSE_5045+ER; (ER)
911045.PSE_2710+ER
911045.PSE_0081+mitochondrial
911045.PSE_3539+mitochondrial
911045.PSE_1707(PF00520)(ER)
911045.PSE_4766+(mitochondrial); (plastid)
911045.PSE_4555(PF11196)ER
911045.PSE_4082+(ER); (plastid)
911045.PSE_4104+(mitochondrial); (plastid)
911045.PSE_0895(PF02239)(mitochondrial); (ER)
911045.PSE_1850+mitochondrial
911045.PSE_4963+ER
911045.PSE_1914+ER
911045.PSE_0248+mitochondrial
911045.PSE_3752(PF13632)(ER)
911045.PSE_3403+ER
911045.PSE_1133(PF02028)ER
911045.PSE_0863+ER
911045.PSE_2227(PF07045)(mitochondrial)
911045.PSE_2778+mitochondrial
911045.PSE_4880+ER
911045.PSE_3426(PF06455)ER
911045.PSE_2914(PF02028)ER
911045.PSE_3162(PF13632)ER
911045.PSE_2203(PF02239)ER
911045.PSE_3239+ER
911045.PSE_4798+(ER)
911045.PSE_4256+ER
911045.PSE_4657+ER
911045.PSE_1765+ER
911045.PSE_1597+ER
911045.PSE_0009+mitochondrial
911045.PSE_0796+ER
911045.PSE_1208+ER
911045.PSE_4113+ER
911045.PSE_0100+(ER)
911045.PSE_2452+(ER)
911045.PSE_0124+(plastid)
911045.PSE_2854(PF00520)(ER)
911045.PSE_3711PF05932(plastid)
911045.PSE_3676PF05932(ER)
911045.PSE_4556(PF11196)ER; not used
911045.PSE_0647+(mitochondrial)
911045.PSE_3037+(mitochondrial)
911045.PSE_3614+(mitochondrial)
911045.PSE_2165+(plastid)
911045.PSE_2226+(ER)
911045.PSE_3452+PF05932
911045.PSE_2088(PF00777)(mitochondrial)
911045.PSE_4118+(PF01442)
911045.PSE_1527+
911045.PSE_2577+
911045.PSE_2320+
911045.PSE_3269+
911045.PSE_2878+
911045.PSE_3121(PF13565)
911045.PSE_1705(PF00520)
911045.PSE_1982+
911045.PSE_3693+
911045.PSE_3696PF05932
911045.PSE_3695+
911045.PSE_3056+
911045.PSE_3298+
911045.PSE_3473+
911045.PSE_1181(PF02028)
911045.PSE_1182+
911045.PSE_0583+
911045.PSE_2180(PF05875)
911045.PSE_4872+
911045.PSE_4908+
911045.PSE_3270+
911045.PSE_0744+
911045.PSE_0373+
911045.PSE_1355PF05932
911045.PSE_1351(PF02028)
911045.PSE_3487+
911045.PSE_1511+
911045.PSE_1434+
911045.PSE_0126(PF03492)
911045.PSE_1649(PF07045)
911045.PSE_4863+
911045.PSE_4914PF05932
911045.PSE_2292(PF08357)
911045.PSE_3070+
911045.PSE_3490+
911045.PSE_2853+
911045.PSE_1726+
911045.PSE_4823+
911045.PSE_3336+
911045.PSE_3008+
911045.PSE_0285+
911045.PSE_2614+
911045.PSE_2060PF05932
911045.PSE_2389+
911045.PSE_3709+
911045.PSE_4381+
911045.PSE_4367+
911045.PSE_2466+
911045.PSE_4890+
911045.PSE_3024+
911045.PSE_1841+
911045.PSE_0736+
911045.PSE_1409+
911045.PSE_0424+
911045.PSE_1468+
911045.PSE_1602+
911045.PSE_1608(PF05875)
911045.PSE_4170(PF02028)
911045.PSE_4630PF05932
911045.PSE_0898(PF02239)
911045.PSE_0897+
911045.PSE_0896+
911045.PSE_4883+
911045.PSE_3355(PF12588)
911045.PSE_0709+
911045.PSE_1270PF05932
911045.PSE_1271PF05932
911045.PSE_3509+
911045.PSE_1293+
911045.PSE_0882+
911045.PSE_0884(PF06042)
911045.PSE_0885(PF06042)
911045.PSE_1911(PF02028)
911045.PSE_0129(PF05154)
911045.PSE_4402+
911045.PSE_4407+
911045.PSE_0082+
911045.PSE_2754+
911045.PSE_2757+
911045.PSE_0068+
911045.PSE_1047(PF07958)
911045.PSE_1444(PF07045)
911045.PSE_4193+
911045.PSE_2236+
911045.PSE_1904(PF07045)
911045.PSE_2694+
911045.PSE_5022PF05932
911045.PSE_0183(PF05154)
911045.PSE_0182(PF05154)
911045.PSE_1639+
911045.PSE_1630+
911045.PSE_2510+
911045.PSE_3960+
911045.PSE_2163+
911045.PSE_2164(PF07045)
911045.PSE_2223(PF02028)
911045.PSE_2225+
911045.PSE_3362(PF13565)
911045.PSE_2593+
911045.PSE_2779(PF14099)
911045.PSE_5039+
911045.PSE_0855+
911045.PSE_3959+
911045.PSE_2172+
911045.PSE_3310+
911045.PSE_2365+
911045.PSE_3221+
911045.PSE_2785+
911045.PSE_3433+
911045.PSE_0841(PF13632)
911045.PSE_2966+
911045.PSE_4324+
911045.PSE_2147(PF12681)
911045.PSE_2143(PF07045)
911045.PSE_0350+
911045.PSE_2207(PF02239)
911045.PSE_3152+
911045.PSE_0330PF02099
911045.PSE_2796+
911045.PSE_2798(PF07045)
911045.PSE_3370+
911045.PSE_0200+
911045.PSE_1556+
911045.PSE_3442+
911045.PSE_3447+
911045.PSE_1177(PF13565)
911045.PSE_2974+
911045.PSE_0041+
911045.PSE_3935+
911045.PSE_1377+
911045.PSE_3338(PF13565)
911045.PSE_3337+
911045.PSE_4790+
911045.PSE_2307+
911045.PSE_4238+
911045.PSE_3140+
911045.PSE_2630+
911045.PSE_0950+
911045.PSE_4814+
911045.PSE_3456+
911045.PSE_2316(PF13565)
911045.PSE_1002+
911045.PSE_0793(PF12681)
911045.PSE_1204(PF13565)
911045.PSE_2953(PF02028)
911045.PSE_4068(PF00520)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0.0 (0/10 KEGG proteins)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================