Effective results for Halobacteriovorax marinus SJ (eggnog40)

Summary

Number of putative secreted proteins: 58
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 29 eukaryotic-like domains, contained in 58 proteins (12 high, 46 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
862908.BMS_2348				(PF01852)	ER
862908.BMS_0875				PF01410	ER
862908.BMS_0879				(PF00023)	ER
862908.BMS_1056				PF01373	ER
862908.BMS_0478				(PF01148)	(ER)
862908.BMS_2244				(PF05708)	ER
862908.BMS_1045				(PF05761)	(mitochondrial)
862908.BMS_0318				PF03901	ER
862908.BMS_0234				(PF01148)	ER
862908.BMS_3335				(PF04187)	ER
862908.BMS_0931				(PF05708)	ER
862908.BMS_0938				PF03298	ER
862908.BMS_0683				(PF04231)	ER
862908.BMS_0682				(PF04231)	ER
862908.BMS_2304				(PF05708)	ER
862908.BMS_1341				(PF04231)	ER
862908.BMS_2879				PF01373	ER
862908.BMS_2871				(PF02190)	ER; (ER)
862908.BMS_2872				(PF01148)	(mitochondrial)
862908.BMS_2739				PF00637	ER
862908.BMS_3110				(PF01852)	ER
862908.BMS_3119				(PF00112)	ER
862908.BMS_2223				(PF00413)	ER
862908.BMS_1192				(PF04187)	ER
862908.BMS_2404				(PF00112)	ER
862908.BMS_0392				PF03901	ER
862908.BMS_1969				(PF04784)	ER
862908.BMS_0145				(PF00413)	ER
862908.BMS_1812				(PF00050)	ER
862908.BMS_0834				(PF04231)	ER
862908.BMS_1483				(PF14532)	(mitochondrial)
862908.BMS_0845				(PF07766)	ER
862908.BMS_2024				(PF04784)	ER
862908.BMS_2021				(PF00413)	ER
862908.BMS_2587				PF10300	mitochondrial
862908.BMS_2103				(PF00023)	ER
862908.BMS_1029				(PF00431)	(ER)
862908.BMS_0460				(PF13127)	(ER)
862908.BMS_2067				(PF02201)	(plastid)
862908.BMS_1084				(PF02201)	mitochondrial
862908.BMS_1484				(PF14532)	(mitochondrial)
862908.BMS_2128				(PF14532)
862908.BMS_2655				(PF04187)
862908.BMS_0192				(PF02190)
862908.BMS_1325				(PF04231)
862908.BMS_2204				(PF10504)
862908.BMS_0597				(PF07958)
862908.BMS_0596				(PF12471)
862908.BMS_2714				(PF02190)
862908.BMS_0388				PF03901
862908.BMS_0387				PF03901
862908.BMS_0147				(PF02190)
862908.BMS_1304				(PF00023)
862908.BMS_0949				PF08557
862908.BMS_0054				(PF00025)
862908.BMS_2373				(PF04231)
862908.BMS_2639				(PF02190)
862908.BMS_2130				PF01536

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================