Metamenu

Effective results for Streptococcus ictaluri 707-05 (eggnog40)

Summary

Number of putative secreted proteins: 221
- Predicted by T4SEpre: 124
- Predicted by EffectiveELD: 11 eukaryotic-like domains, contained in 136 proteins (102 high, 34 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): (Type IV)

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
764299.STRIC_0286PF13276 PF00665mitochondrial
764299.STRIC_2352PF13276 PF00665mitochondrial
764299.STRIC_1537PF13276 PF00665mitochondrial
764299.STRIC_2446PF13276 PF00665mitochondrial
764299.STRIC_0491PF13276 PF00665mitochondrial
764299.STRIC_0724PF13276 PF00665mitochondrial
764299.STRIC_1833PF13276 PF00665mitochondrial
764299.STRIC_2390PF13276 PF00665mitochondrial
764299.STRIC_0266PF13276 PF00665mitochondrial
764299.STRIC_1572PF13276 PF00665mitochondrial
764299.STRIC_2271PF13276 PF00665mitochondrial
764299.STRIC_2198PF13276 PF00665mitochondrial
764299.STRIC_2331PF13276 PF00665mitochondrial
764299.STRIC_0312PF13276 PF00665mitochondrial
764299.STRIC_1046PF13276 PF00665mitochondrial
764299.STRIC_1639PF13276 PF00665mitochondrial
764299.STRIC_0336PF13276 PF00665mitochondrial
764299.STRIC_0517PF13276 PF00665mitochondrial
764299.STRIC_1247PF13276 PF00665mitochondrial
764299.STRIC_1108PF13276 PF00665mitochondrial
764299.STRIC_2344PF13276 PF00665mitochondrial
764299.STRIC_0280+ER
764299.STRIC_1003PF13276mitochondrial
764299.STRIC_0847PF05257ER
764299.STRIC_0570PF13936(mitochondrial)
764299.STRIC_0648+ER
764299.STRIC_0485+(mitochondrial)
764299.STRIC_1738+(mitochondrial); mitochondrial
764299.STRIC_0248+(ER)
764299.STRIC_1975+ER
764299.STRIC_0114+PF00665 PF13936
764299.STRIC_1373+ER
764299.STRIC_0762+ER
764299.STRIC_2508+ER
764299.STRIC_2504+ER
764299.STRIC_1799+(mitochondrial)
764299.STRIC_0918+ER
764299.STRIC_1888+(mitochondrial)
764299.STRIC_0170+ER
764299.STRIC_1827+PF00665 PF13936
764299.STRIC_1768+ER
764299.STRIC_2038PF05257ER
764299.STRIC_1785PF13276mitochondrial
764299.STRIC_1544+ER
764299.STRIC_0969(PF13155)mitochondrial
764299.STRIC_1933+ER
764299.STRIC_1468+ER
764299.STRIC_2167+ER
764299.STRIC_1130+(ER)
764299.STRIC_2176+ER
764299.STRIC_1263+ER
764299.STRIC_1693+mitochondrial
764299.STRIC_1870+ER
764299.STRIC_0672+ER; (ER)
764299.STRIC_2049PF05257ER
764299.STRIC_2290+ER
764299.STRIC_2085(PF07837) (PF02971)
764299.STRIC_2286+PF13936
764299.STRIC_2285PF00665(mitochondrial)
764299.STRIC_0472PF00665(mitochondrial)
764299.STRIC_0380PF00665 PF13936
764299.STRIC_0728+PF00665
764299.STRIC_1028PF00665 PF13936
764299.STRIC_1603PF00665 PF13936
764299.STRIC_0136PF00665(mitochondrial)
764299.STRIC_0251PF00665 PF13936
764299.STRIC_1722PF00665(mitochondrial)
764299.STRIC_0744PF00665 PF13936
764299.STRIC_0105+(mitochondrial)
764299.STRIC_2062PF00665(mitochondrial)
764299.STRIC_1972PF00665 PF13936
764299.STRIC_0343PF00665 PF13936
764299.STRIC_2476PF00665 PF13936
764299.STRIC_2470PF00665 PF13936
764299.STRIC_1171PF00665 PF13936
764299.STRIC_1420PF05257(plastid)
764299.STRIC_0215PF00665 PF13936
764299.STRIC_1095PF00665 PF13936
764299.STRIC_1092PF00665(mitochondrial)
764299.STRIC_2521+(mitochondrial)
764299.STRIC_1948PF00665 PF13936
764299.STRIC_1158PF00665(mitochondrial)
764299.STRIC_2153PF00665(mitochondrial)
764299.STRIC_2305PF00665 PF13936
764299.STRIC_2233PF00665 PF13936
764299.STRIC_0637PF00665(mitochondrial)
764299.STRIC_0636+PF13936
764299.STRIC_2229PF00665 PF13936
764299.STRIC_0624PF05257(plastid)
764299.STRIC_1661PF00665 PF13936
764299.STRIC_1464PF00665 PF13936
764299.STRIC_0320PF00665 PF13936
764299.STRIC_1129PF00665 PF13936
764299.STRIC_1581+(PF13155)
764299.STRIC_0571+PF00665
764299.STRIC_2194+PF13936
764299.STRIC_2195PF00665(mitochondrial)
764299.STRIC_1816+
764299.STRIC_0287(PF01527)
764299.STRIC_1004PF00665
764299.STRIC_1002(PF01527)
764299.STRIC_2351(PF01527)
764299.STRIC_2130+
764299.STRIC_2139(PF12949)
764299.STRIC_1533PF13936not used
764299.STRIC_1534PF00665
764299.STRIC_1538(PF01527)
764299.STRIC_0471PF13936
764299.STRIC_0389+
764299.STRIC_0490(PF01527)
764299.STRIC_0727PF13936
764299.STRIC_0723(PF01527)
764299.STRIC_0935+
764299.STRIC_1528(PF03714)
764299.STRIC_1834(PF01527)
764299.STRIC_2391(PF01527)
764299.STRIC_0267(PF01527)
764299.STRIC_0264+
764299.STRIC_1734+
764299.STRIC_2399+
764299.STRIC_1607PF00665
764299.STRIC_1605(PF01527)
764299.STRIC_0006PF05257
764299.STRIC_0002+
764299.STRIC_0131+
764299.STRIC_0135PF13936
764299.STRIC_1721PF13936
764299.STRIC_1727PF00665
764299.STRIC_1728PF13936
764299.STRIC_2074+
764299.STRIC_0816+
764299.STRIC_0242+
764299.STRIC_0245PF13936
764299.STRIC_1658+
764299.STRIC_0757+
764299.STRIC_2063PF13936
764299.STRIC_2064+
764299.STRIC_1579+
764299.STRIC_1577+
764299.STRIC_1573(PF01527)
764299.STRIC_0027+
764299.STRIC_0028+
764299.STRIC_0236+
764299.STRIC_2270(PF01527)
764299.STRIC_0694(PF05495)
764299.STRIC_2472+
764299.STRIC_0906+
764299.STRIC_1988PF00665
764299.STRIC_1987PF13936
764299.STRIC_0164+
764299.STRIC_1101+
764299.STRIC_0608PF13936
764299.STRIC_0680+
764299.STRIC_2462+
764299.STRIC_2468+
764299.STRIC_0772(PF03714)
764299.STRIC_1796+
764299.STRIC_2199(PF01527)
764299.STRIC_1554PF05257
764299.STRIC_1427PF05257
764299.STRIC_1883+
764299.STRIC_0218+
764299.STRIC_0211+
764299.STRIC_1163+
764299.STRIC_1093PF13936
764299.STRIC_1786(PF01527)
764299.STRIC_1784PF00665
764299.STRIC_0960PF05257
764299.STRIC_0140+
764299.STRIC_0148+
764299.STRIC_0201PF00665
764299.STRIC_0203PF13936
764299.STRIC_0372PF13936
764299.STRIC_0374+
764299.STRIC_0378PF05257
764299.STRIC_1233+
764299.STRIC_1159PF13936
764299.STRIC_2445(PF01527)
764299.STRIC_2330(PF01527)
764299.STRIC_0556+
764299.STRIC_0971+
764299.STRIC_1330PF00665
764299.STRIC_0419PF13936
764299.STRIC_2188+
764299.STRIC_1459+
764299.STRIC_1329PF13936
764299.STRIC_0313(PF01527)
764299.STRIC_1210(PF13155)
764299.STRIC_1047(PF01527)
764299.STRIC_0629+
764299.STRIC_1638(PF01527)
764299.STRIC_1919+
764299.STRIC_1861+
764299.STRIC_1269PF13936
764299.STRIC_0502+
764299.STRIC_2365+
764299.STRIC_1474+
764299.STRIC_0985+
764299.STRIC_1871+
764299.STRIC_0051+
764299.STRIC_0337(PF01527)
764299.STRIC_1088PF13936
764299.STRIC_1278PF00665
764299.STRIC_1276(PF01527)
764299.STRIC_1271PF00665
764299.STRIC_0420PF00665
764299.STRIC_0516(PF01527)
764299.STRIC_2119+
764299.STRIC_2110+
764299.STRIC_2517+
764299.STRIC_0195+
764299.STRIC_1248(PF01527)
764299.STRIC_1107(PF01527)
764299.STRIC_0459PF00665
764299.STRIC_0458PF13936not used
764299.STRIC_1068+
764299.STRIC_2295+
764299.STRIC_2345(PF01527)
764299.STRIC_1063+
764299.STRIC_0617+
764299.STRIC_1494(PF13155)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: YES (FDR = 7.2 %)
    Estimated copy number = 0 (0/0 KEGG proteins)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================