Effective results for Prochlorococcus marinus str. MIT 9312 (eggnog40)

Summary

Number of putative secreted proteins: 108
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 90 eukaryotic-like domains, contained in 108 proteins (8 high, 100 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
74546.PMT9312_0461				(PF16639) (PF01333)	ER
74546.PMT9312_0571				(PF11460)	ER
74546.PMT9312_0570				(PF10716)	ER
74546.PMT9312_0700				(PF00504)	ER
74546.PMT9312_1109				(PF01789)	ER
74546.PMT9312_0508				(PF13326)	mitochondrial; (mitochondrial)
74546.PMT9312_0501				(PF11016)	ER; (ER)
74546.PMT9312_1675				(PF12046)	ER
74546.PMT9312_0469				(PF02507)	ER
74546.PMT9312_1803				(PF00862)	(ER)
74546.PMT9312_1736				(PF01737)	ER
74546.PMT9312_0256				(PF12600)	(ER)
74546.PMT9312_0065				(PF07444)	ER
74546.PMT9312_0803				(PF12452)	ER
74546.PMT9312_0321				(PF00421)	(mitochondrial)
74546.PMT9312_0936				(PF11152)	ER
74546.PMT9312_0239				(PF07444)	ER
74546.PMT9312_0234				(PF04483)	(mitochondrial)
74546.PMT9312_0230				(PF01716)	ER
74546.PMT9312_1176				(PF00283)	ER
74546.PMT9312_0749				(PF11264)	(mitochondrial)
74546.PMT9312_0114				(PF05421)	(ER); (plastid)
74546.PMT9312_1566				(PF11341)	(ER)
74546.PMT9312_0653				(PF16166)	ER
74546.PMT9312_0323				(PF05151)	ER; not used
74546.PMT9312_1540				(PF11805)	(ER)
74546.PMT9312_0299				(PF00284) (PF00283)
74546.PMT9312_0468				(PF01701)	mitochondrial; not used
74546.PMT9312_0254				(PF02468)	ER; not used
74546.PMT9312_0255				(PF02532)	ER; not used
74546.PMT9312_0253				(PF00737)	(mitochondrial)
74546.PMT9312_0300				(PF00283)	(ER); not used
74546.PMT9312_0797				(PF09419)
74546.PMT9312_0798				(PF12527)
74546.PMT9312_0341				(PF01786)
74546.PMT9312_1117				(PF10674)
74546.PMT9312_0148				(PF11371)
74546.PMT9312_0147				(PF10664)
74546.PMT9312_0896				(PF10693)
74546.PMT9312_1251				(PF08041)	not used
74546.PMT9312_1128				(PF06298)	not used
74546.PMT9312_0333				(PF12899)
74546.PMT9312_1684				(PF05996)
74546.PMT9312_1685				(PF05996)
74546.PMT9312_0422				(PF10013)	not used
74546.PMT9312_1069				(PF02529)	not used
74546.PMT9312_0955				(PF11210)
74546.PMT9312_1215				PF10999
74546.PMT9312_1218				PF10999
74546.PMT9312_0631				(PF13455)
74546.PMT9312_0855				(PF11947)
74546.PMT9312_1697				(PF11623)
74546.PMT9312_0752				(PF11347)
74546.PMT9312_1266				(PF08854)
74546.PMT9312_0620				(PF07082)
74546.PMT9312_0622				PF01744
74546.PMT9312_0625				(PF09493)
74546.PMT9312_0627				(PF00421)
74546.PMT9312_0290				PF00493
74546.PMT9312_1271				(PF00421)
74546.PMT9312_1273				(PF13911)
74546.PMT9312_0274				(PF02533)	not used
74546.PMT9312_1670				(PF02531)
74546.PMT9312_1428				(PF08855)
74546.PMT9312_0868				(PF11282)
74546.PMT9312_0262				(PF11378)
74546.PMT9312_0463				(PF11267)
74546.PMT9312_1809				(PF12095)
74546.PMT9312_1423				(PF11317)
74546.PMT9312_1517				PF01744
74546.PMT9312_0386				(PF08853)
74546.PMT9312_1257				(PF00421)
74546.PMT9312_1255				(PF02392)
74546.PMT9312_0702				(PF09493)
74546.PMT9312_1383				(PF13355)
74546.PMT9312_1652				(PF12617)
74546.PMT9312_1651				(PF11909)
74546.PMT9312_1655				PF10999
74546.PMT9312_0066				(PF00504)
74546.PMT9312_0064				(PF06596)
74546.PMT9312_0664				(PF11833)
74546.PMT9312_0667				(PF12049)
74546.PMT9312_0320				(PF01405)	not used
74546.PMT9312_0895				(PF12159)
74546.PMT9312_1230				(PF00504)	not used
74546.PMT9312_1533				(PF04839)
74546.PMT9312_0124				(PF11910)
74546.PMT9312_0905				(PF11360)
74546.PMT9312_1742				(PF04481)
74546.PMT9312_1588				(PF11998)
74546.PMT9312_0914				(PF09353)
74546.PMT9312_0335				(PF02427)
74546.PMT9312_1616				(PF00223)
74546.PMT9312_1615				(PF00223)
74546.PMT9312_1612				(PF00796)	not used
74546.PMT9312_1611				(PF02605)
74546.PMT9312_1508				(PF00504)	not used
74546.PMT9312_1768				(PF01947)
74546.PMT9312_0748				PF03742	not used
74546.PMT9312_0686				(PF00504)	not used
74546.PMT9312_0755				(PF05996)
74546.PMT9312_0978				(PF06799)
74546.PMT9312_1576				(PF04983)
74546.PMT9312_1577				(PF04983)
74546.PMT9312_0302				(PF01788)
74546.PMT9312_0301				PF02419	not used
74546.PMT9312_0948				(PF04483)
74546.PMT9312_1414				(PF00504)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================