Effective results for Thermus scotoductus SA-01 (eggnog40)

Summary

Number of putative secreted proteins: 27
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 13 eukaryotic-like domains, contained in 27 proteins (5 high, 22 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
743525.TSC_c11710				(PF11563)	(mitochondrial)
743525.TSC_c14650				PF03351	ER
743525.TSC_c23830				(PF01875)	ER; (ER)
743525.TSC_c07770				(PF01909)	(mitochondrial); (plastid)
743525.TSC_c06330				(PF02475)	(mitochondrial)
743525.TSC_c24680				PF16575	(mitochondrial)
743525.TSC_c07700				(PF01909)	(ER)
743525.TSC_c16120				PF04098
743525.TSC_c00430				(PF04930)
743525.TSC_c09960				(PF01909)
743525.TSC_c12350				(PF02171)
743525.TSC_c12580				(PF01909)
743525.TSC_c06080				PF04098
743525.TSC_c05370				(PF01909)
743525.TSC_c17420				(PF11563)
743525.TSC_c23000				(PF01909)
743525.TSC_c04820				PF08672
743525.TSC_c09990				(PF01909)
743525.TSC_c09450				(PF01875)
743525.TSC_c09700				(PF00025)
743525.TSC_c12420				(PF01909)
743525.TSC_c11960				(PF11563)
743525.TSC_c23800				(PF01909)
743525.TSC_c01130				(PF01909)
743525.TSC_c01910				(PF08271)	not used
743525.TSC_c15950				(PF14216)
743525.TSC_c20480				(PF11563)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================