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Genomes encoding eukaryotic-like proteins

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PF11563 Protoglobin

Copy number in non-pathogens:
Mean=0.34 Stddev=0.79

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacillus massilioanorexius AP8 s 4 4
Kurthia senegalensis s 4 4
Brevibacillus sp. CF112 s 5 5
Saprospira grandis DSM 2844 s 12 10
Labrenzia alexandrii DFL-11 s 4 4
Azospirillum halopraeferens DSM 3675 s 4 4
Niveispirillum irakense DSM 11586 s 4 4
Shinella sp. DD12 s 5 5
Lysinibacillus sphaericus OT4b.31 s 4 4
Ruegeria sp. TM1040 s 4 4
Azospirillum brasilense s 5 5
Lysinibacillus sp. BF-4 s 5 5
Lysinibacillus sphaericus s 5 5
Azospirillum brasilense s 4 4
Azospirillum brasilense s 4 4
Lysinibacillus sphaericus s 5 5
Acetobacter orientalis s 5 5
Lysinibacillus sphaericus s 4 4
Lysinibacillus sphaericus s 4 4
Lysinibacillus sphaericus s 4 4
Lysinibacillus sphaericus s 5 5
Azospirillum brasilense s 4 4
Lysinibacillus sphaericus s 5 5
Lysinibacillus sphaericus s 4 4
Lysinibacillus sphaericus s 4 4
Lysinibacillus sphaericus s 4 4
Lysinibacillus sphaericus s 4 4
Lysinibacillus sp. AR18-8 s 5 5

*p=pathogen;s=symbiont

Release announcements

News

  • EffectiveDB genome mode fixed

    24.11.20
  • EFFECTIVEELD 5.2: EUKARYOTIC-LIKE DOMAIN PREDICTION UPGRADED TO PFAM 31

    20.08.17
  • EffectiveELD 5.1: Eukaryotic-like domain prediction upgraded to Pfam 29

    24.06.16

Latest publications

  • EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems.
  • Prediction of microbial phenotypes based on comparative genomics.

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