Effective results for Lactobacillus sanfranciscensis TMW 1.1304 (eggnog40)

Summary

Number of putative secreted proteins: 46
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 6 eukaryotic-like domains, contained in 46 proteins (19 high, 27 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
714313.LSA_01280				(PF00665) (PF13276)	(mitochondrial)
714313.LSA_10780				(PF00665) (PF13276)	(mitochondrial)
714313.LSA_12850				(PF00665) (PF13276)	mitochondrial; (mitochondrial)
714313.LSA_03410				(PF00665) (PF13276)	(mitochondrial)
714313.LSA_12430				(PF00665) (PF13276)	(mitochondrial)
714313.LSA_02240				(PF03596)	ER
714313.LSA_01660				(PF05704)	mitochondrial
714313.LSA_13140				PF13518	(mitochondrial)
714313.LSA_02280				(PF00665) (PF13276)	(plastid)
714313.LSA_12820				(PF03596)	ER
714313.LSA_00830				(PF02912)	ER; (ER)
714313.LSA_01610				PF13518	(mitochondrial)
714313.LSA_10600				(PF00665) (PF13276)
714313.LSA_10420				(PF00665) (PF13276)
714313.LSA_11630				(PF00665) (PF13276)
714313.LSA_12420				PF13518	(mitochondrial)
714313.LSA_10770				PF13518	(mitochondrial)
714313.LSA_12600				(PF00665) (PF13276)
714313.LSA_01550				(PF00665) (PF13276)
714313.LSA_01620				(PF00665) (PF13276)
714313.LSA_03420				PF13518	(mitochondrial)
714313.LSA_02640				(PF00665) (PF13276)
714313.LSA_01880				(PF00665) (PF13276)
714313.LSA_01760				(PF00665) (PF13276)
714313.LSA_05350				(PF00665) (PF13276)
714313.LSA_13300				(PF00665) (PF13276)
714313.LSA_10330				(PF00665) (PF13276)
714313.LSA_07100				(PF00665) (PF13276)
714313.LSA_02130				(PF00665)
714313.LSA_10340				PF13518
714313.LSA_12590				PF13518
714313.LSA_01740				(PF00665)
714313.LSA_11640				PF13518
714313.LSA_12160				PF13518
714313.LSA_01540				PF13518
714313.LSA_10830				(PF00665)
714313.LSA_06370				(PF02912)
714313.LSA_01750				PF13518
714313.LSA_01870				PF13518
714313.LSA_01270				PF13518
714313.LSA_05340				PF13518
714313.LSA_13310				PF13518
714313.LSA_10590				PF13518
714313.LSA_02460				PF13518	not used
714313.LSA_00960				PF13518
714313.LSA_10430				PF13518

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: NO (FDR = 0.5 %)
• Functional Type III secretion system: N.D.
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================