Metamenu

Effective results for Segniliparus rugosus ATCC BAA-974 (eggnog40)

Summary

Number of putative secreted proteins: 74
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 17 eukaryotic-like domains, contained in 74 proteins (7 high, 67 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
679197.HMPREF9336_01264(PF13810)ER
679197.HMPREF9336_02006(PF00079)ER
679197.HMPREF9336_00882(PF13738)ER
679197.HMPREF9336_00331(PF01121)(mitochondrial)
679197.HMPREF9336_01242(PF13738)(mitochondrial); mitochondrial
679197.HMPREF9336_00862(PF12899)mitochondrial
679197.HMPREF9336_02235(PF02945)(mitochondrial)
679197.HMPREF9336_02912(PF00648) (PF06013)
679197.HMPREF9336_00815(PF13481)
679197.HMPREF9336_00814(PF13481)
679197.HMPREF9336_03490(PF08354)not used
679197.HMPREF9336_00165(PF06013)
679197.HMPREF9336_00164(PF06013)
679197.HMPREF9336_02241(PF02945)
679197.HMPREF9336_00804(PF14311)
679197.HMPREF9336_01991(PF13738)
679197.HMPREF9336_01993(PF13738)
679197.HMPREF9336_02875(PF03405)
679197.HMPREF9336_00562(PF04072)
679197.HMPREF9336_02047(PF04072)
679197.HMPREF9336_03482(PF13738)
679197.HMPREF9336_03157(PF13738)
679197.HMPREF9336_02525(PF05088)not used
679197.HMPREF9336_02524(PF05088)
679197.HMPREF9336_02526(PF05088)
679197.HMPREF9336_03006(PF13738)
679197.HMPREF9336_01895(PF13481)
679197.HMPREF9336_01945(PF13738)
679197.HMPREF9336_01442(PF04072)
679197.HMPREF9336_01209(PF13738)
679197.HMPREF9336_02234(PF13481)
679197.HMPREF9336_01146(PF06013)
679197.HMPREF9336_01147(PF14021)
679197.HMPREF9336_01145(PF06013)
679197.HMPREF9336_00575(PF06013)
679197.HMPREF9336_02161(PF13810)
679197.HMPREF9336_03166(PF04072)
679197.HMPREF9336_03167(PF04072)
679197.HMPREF9336_03164(PF04072)
679197.HMPREF9336_03165(PF04072)
679197.HMPREF9336_01173(PF13738)
679197.HMPREF9336_02556(PF13738)
679197.HMPREF9336_00080(PF06013)
679197.HMPREF9336_00088(PF06013)
679197.HMPREF9336_00089(PF06013)
679197.HMPREF9336_01049(PF13810)
679197.HMPREF9336_01680PF04505
679197.HMPREF9336_02005(PF00079)
679197.HMPREF9336_02564PF04505
679197.HMPREF9336_02563PF04505
679197.HMPREF9336_01863(PF13738)
679197.HMPREF9336_00324(PF03405)
679197.HMPREF9336_00056(PF06013)
679197.HMPREF9336_00055(PF06013)
679197.HMPREF9336_01051(PF13481)
679197.HMPREF9336_00059PF04505
679197.HMPREF9336_01692PF00955
679197.HMPREF9336_03358(PF04072)
679197.HMPREF9336_00332(PF01121)
679197.HMPREF9336_03519(PF06013)
679197.HMPREF9336_01247(PF06013)
679197.HMPREF9336_02908PF04505
679197.HMPREF9336_00457(PF06013)
679197.HMPREF9336_02340(PF13738)
679197.HMPREF9336_00071PF04505
679197.HMPREF9336_00079(PF06013)
679197.HMPREF9336_01651(PF03405)
679197.HMPREF9336_02125(PF13810)
679197.HMPREF9336_00285(PF04072)
679197.HMPREF9336_00062(PF14021)
679197.HMPREF9336_03091(PF13738)
679197.HMPREF9336_01016(PF04072)
679197.HMPREF9336_02652(PF13481)
679197.HMPREF9336_03460(PF03405)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================