Effective results for Prevotella timonensis CRIS 5C-B1 (eggnog40)

Summary

Number of putative secreted proteins: 36
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 16 eukaryotic-like domains, contained in 36 proteins (4 high, 32 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

Protein	EffectiveT3	EffectiveCCBD	T4SEpre	EffectiveELD	Predotar
679189.HMPREF9019_0317				(PF02838) (PF00728) (PF13287)	ER
679189.HMPREF9019_1143				(PF02838) (PF00728)	ER
679189.HMPREF9019_1444				(PF02838) (PF00728)	ER
679189.HMPREF9019_0432				(PF02838) (PF00728)	ER
679189.HMPREF9019_0308				(PF03051)	(mitochondrial)
679189.HMPREF9019_1232				(PF13905)	ER
679189.HMPREF9019_1769				(PF16313)	mitochondrial; ER
679189.HMPREF9019_1764				(PF16313)	ER
679189.HMPREF9019_0490				(PF03051)	ER
679189.HMPREF9019_2257				(PF13287)	ER
679189.HMPREF9019_1757				(PF16011)	(mitochondrial)
679189.HMPREF9019_0888				(PF13905)	ER
679189.HMPREF9019_0701				(PF01715)	ER
679189.HMPREF9019_1658				PF03644	ER
679189.HMPREF9019_1396				(PF16313)	ER
679189.HMPREF9019_1417				PF03644	ER
679189.HMPREF9019_1400				(PF13905)	ER
679189.HMPREF9019_0599				PF03644	ER
679189.HMPREF9019_0551				(PF02838) (PF00728)
679189.HMPREF9019_1492				(PF02838) (PF00728)
679189.HMPREF9019_0363				(PF01715)	(plastid)
679189.HMPREF9019_2021				(PF16313)	(mitochondrial)
679189.HMPREF9019_1147				(PF16314)
679189.HMPREF9019_0305				(PF03630)
679189.HMPREF9019_2147				(PF01807)
679189.HMPREF9019_1954				(PF05970)
679189.HMPREF9019_1811				(PF01535)
679189.HMPREF9019_0365				(PF05970)
679189.HMPREF9019_1960				(PF01807)
679189.HMPREF9019_1577				(PF01807)
679189.HMPREF9019_1121				PF16269
679189.HMPREF9019_0864				(PF05693)
679189.HMPREF9019_0259				(PF01807)
679189.HMPREF9019_1730				(PF03051)
679189.HMPREF9019_0839				(PF13905)
679189.HMPREF9019_0331				(PF02838)

Detailed merged results for each protein sequence

• Detailed merged results as table (merge_results.html)
• Detailed merged results as tab delimited file (merge_results.csv)

Individual results for each protein sequence

• EffectiveELD predictions (PROTEINS.ELD.TXT)
• Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
• Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)

Genome based results

Summary

• Gram negative: YES (FDR = 0.5 %)
• Functional Type III secretion system: NO (FDR = 12.5 %)
• Functional Type IV secretion system: NO (FDR = 7.2 %)
• Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

• List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
• List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
• List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
• List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
• List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================