Metamenu

Effective results for Deferribacter desulfuricans SSM1 (eggnog40)

Summary

Number of putative secreted proteins: 22
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 8 eukaryotic-like domains, contained in 22 proteins (1 high, 21 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
639282.DEFDS_2033(PF14295) PF01822 (PF04862)ER
639282.DEFDS_1152(PF09458)ER
639282.DEFDS_0492(PF00037)(ER)
639282.DEFDS_1688(PF00037)(ER); (mitochondrial)
639282.DEFDS_1334(PF00037) (PF13237)
639282.DEFDS_0633(PF00037)
639282.DEFDS_1397(PF12646)
639282.DEFDS_1094(PF00037)
639282.DEFDS_1260(PF00037)
639282.DEFDS_2136(PF00037)
639282.DEFDS_1612(PF13237)
639282.DEFDS_1293(PF00037)
639282.DEFDS_1822(PF00037)
639282.DEFDS_0692(PF00037)
639282.DEFDS_1833(PF13237)
639282.DEFDS_0685(PF13237)
639282.DEFDS_0024(PF00025)
639282.DEFDS_0781(PF00037)
639282.DEFDS_1016(PF00037)
639282.DEFDS_0487(PF13237)
639282.DEFDS_1687(PF00037)
639282.DEFDS_1980(PF00037)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================