Effective results for Citrobacter rodentium ICC168 (eggnog40)
Summary
Number of putative secreted proteins: 791
- Predicted by EffectiveT3: 188 (high confidence), 279 (low confidence)
- Predicted by EffectiveCCBD: 34 within, 22 before, 43 behind expected region 25..70aa
- Predicted by T4SEpre: 103
- Predicted by EffectiveELD: 24 eukaryotic-like domains, contained in 181 proteins (23 high, 158 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type III, (Type IV)
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 637910.ROD_11911 | + | (PF03797) | (mitochondrial) | ||
| 637910.ROD_16841 | + | (PF03797) | (mitochondrial) | ||
| 637910.ROD_28861 | (>) | ER | |||
| 637910.ROD_15481 | (>) | mitochondrial; (mitochondrial) | |||
| 637910.ROD_23591 | + | ER | |||
| 637910.ROD_22641 | (>) | (mitochondrial) | |||
| 637910.ROD_21421 | (PF10662) | mitochondrial | |||
| 637910.ROD_10051 | + | (mitochondrial); plastid | |||
| 637910.ROD_42591 | (PF03797) | (mitochondrial); (ER) | |||
| 637910.ROD_03641 | (>) | ER | |||
| 637910.ROD_18691 | (>) | ER | |||
| 637910.ROD_20811 | + | (PF03797) | (ER) | ||
| 637910.ROD_42691 | + | ER; (ER) | |||
| 637910.ROD_02091 | + | mitochondrial | |||
| 637910.ROD_14601 | + | ER | |||
| 637910.ROD_05201 | + | mitochondrial | |||
| 637910.ROD_38761 | (PF03797) | (mitochondrial) | |||
| 637910.ROD_06971 | + | (PF01609) | (plastid) | ||
| 637910.ROD_27931 | + | (PF01609) | (plastid) | ||
| 637910.ROD_35871 | (PF05935) | ER | |||
| 637910.ROD_43171 | + | (mitochondrial); plastid | |||
| 637910.ROD_33441 | + | ER | |||
| 637910.ROD_35411 | (<) | (ER) | |||
| 637910.ROD_15731 | (PF03797) | (mitochondrial) | |||
| 637910.ROD_39171 | + | ER | |||
| 637910.ROD_10671 | + | ER | |||
| 637910.ROD_36081 | (PF00939) | ER | |||
| 637910.ROD_18451 | + | ER | |||
| 637910.ROD_29381 | (PF00577) | (ER) | |||
| 637910.ROD_46711 | (PF03222) | ER | |||
| 637910.ROD_48711 | (>) | (ER) | |||
| 637910.ROD_04151 | (PF03797) | ER; (ER) | |||
| 637910.ROD_03891 | (PF03797) | ER | |||
| 637910.ROD_16391 | (+) | (PF03797) | ER | ||
| 637910.ROD_19621 | (PF03222) | (ER) | |||
| 637910.ROD_03661 | (PF00345) | ER | |||
| 637910.ROD_29241 | (PF00345) | ER | |||
| 637910.ROD_41281 | (PF00577) | ER | |||
| 637910.ROD_28751 | (<) | (ER) | |||
| 637910.ROD_01241 | + | ER | |||
| 637910.ROD_02111 | (PF03797) | ER | |||
| 637910.ROD_48531 | (>) | ER | |||
| 637910.ROD_42391 | + | ER | |||
| 637910.ROD_24461 | (PF05231) | ER | |||
| 637910.ROD_29071 | + | ER | |||
| 637910.ROD_11991 | + | (mitochondrial); (plastid) | |||
| 637910.ROD_28991 | (PF03222) | (ER) | |||
| 637910.ROD_11771 | (PF00345) | ER | |||
| 637910.ROD_19351 | (PF00577) | mitochondrial; ER | |||
| 637910.ROD_38291 | (PF00939) | ER | |||
| 637910.ROD_40421 | + | (mitochondrial) | |||
| 637910.ROD_19281 | + | (mitochondrial) | |||
| 637910.ROD_14761 | (>) | ER | |||
| 637910.ROD_41241 | + | ER | |||
| 637910.ROD_40441 | (>) | ER | |||
| 637910.ROD_49731 | (PF03797) | (mitochondrial) | |||
| 637910.ROD_45881 | (>) | ER | |||
| 637910.ROD_04181 | (>) | ER | |||
| 637910.ROD_23871 | (>) | (mitochondrial) | |||
| 637910.ROD_41271 | (PF00345) | ER | |||
| 637910.ROD_50621 | (PF00345) | ER | |||
| 637910.ROD_15771 | + | (mitochondrial) | |||
| 637910.ROD_36561 | + | ER | |||
| 637910.ROD_41781 | + | (mitochondrial) | |||
| 637910.ROD_22331 | (PF00345) | ER | |||
| 637910.ROD_29371 | (PF00345) | ER | |||
| 637910.ROD_06611 | + | ER | |||
| 637910.ROD_24091 | (PF10662) | (mitochondrial) | |||
| 637910.ROD_09661 | (PF00456) | (ER) | |||
| 637910.ROD_29891 | + | + | (plastid) | ||
| 637910.ROD_15411 | (PF06884) | ER | |||
| 637910.ROD_11781 | (PF00577) | ER | |||
| 637910.ROD_19361 | (PF00345) | ER | |||
| 637910.ROD_22321 | (PF00577) | ER | |||
| 637910.ROD_22031 | (PF05231) | ER | |||
| 637910.ROD_06271 | (PF00939) | ER | |||
| 637910.ROD_42171 | + | (ER) | |||
| 637910.ROD_28141 | (PF05231) | (mitochondrial) | |||
| 637910.ROD_27781 | (PF00577) | (ER) | |||
| 637910.ROD_04081 | (PF05231) | ER | |||
| 637910.ROD_18171 | (PF00345) | ER | |||
| 637910.ROD_07041 | (>) | ER | |||
| 637910.ROD_40361 | + | (mitochondrial) | |||
| 637910.ROD_40631 | (PF05231) | ER | |||
| 637910.ROD_07341 | + | ER | |||
| 637910.ROD_00511 | (PF03797) | mitochondrial; (mitochondrial) | |||
| 637910.ROD_00601 | (<) | ER | |||
| 637910.ROD_05551 | + | (mitochondrial) | |||
| 637910.ROD_28431 | + | ER | |||
| 637910.ROD_27791 | (PF00345) | ER | |||
| 637910.ROD_19891 | + | ER | |||
| 637910.ROD_43111 | (PF00939) | ER | |||
| 637910.ROD_35821 | + | ER | |||
| 637910.ROD_32351 | + | ER | |||
| 637910.ROD_29141 | (PF00345) | mitochondrial | |||
| 637910.ROD_34981 | (PF00577) | ER | |||
| 637910.ROD_24351 | + | ER | |||
| 637910.ROD_38181 | + | (PF01609) | (plastid) | ||
| 637910.ROD_09921 | + | (mitochondrial) | |||
| 637910.ROD_14641 | + | ER | |||
| 637910.ROD_27671 | + | (ER) | |||
| 637910.ROD_07661 | (PF00939) | ER | |||
| 637910.ROD_34991 | (PF00345) | ER | |||
| 637910.ROD_43771 | (>) | ER | |||
| 637910.ROD_05091 | (>) | ER | |||
| 637910.ROD_27811 | + | (mitochondrial) | |||
| 637910.ROD_11321 | (>) | mitochondrial | |||
| 637910.ROD_41441 | (>) | ER | |||
| 637910.ROD_23851 | + | ER | |||
| 637910.ROD_44031 | (>) | ER | |||
| 637910.ROD_19211 | (<) | (mitochondrial); mitochondrial | |||
| 637910.ROD_03211 | + | + | (plastid) | ||
| 637910.ROD_29201 | + | ER | |||
| 637910.ROD_20271 | + | ER; (ER) | |||
| 637910.ROD_03921 | (PF03797) | ER | |||
| 637910.ROD_29741 | + | (plastid) | |||
| 637910.ROD_02981 | + | (PF05704) | |||
| 637910.ROD_15141 | (<) | ||||
| 637910.ROD_13361 | + | ER; not used | |||
| 637910.ROD_03201 | (<) | (mitochondrial); not used | |||
| 637910.ROD_42441 | (<) | ||||
| 637910.ROD_04611 | + | (plastid) | |||
| 637910.ROD_27281 | + | (mitochondrial) | |||
| 637910.ROD_23121 | (+) | (mitochondrial) | |||
| 637910.ROD_30151 | + | (mitochondrial) | |||
| 637910.ROD_00331 | (+) | mitochondrial | |||
| 637910.ROD_11021 | (+) | ER; (ER) | |||
| 637910.ROD_08761 | (+) | (mitochondrial) | |||
| 637910.ROD_07681 | (+) | ER | |||
| 637910.ROD_20091 | + | + | |||
| 637910.ROD_08001 | (PF00456) | (mitochondrial) | |||
| 637910.ROD_03071 | + | (mitochondrial) | |||
| 637910.ROD_33331 | (+) | (mitochondrial) | |||
| 637910.ROD_15181 | + | (plastid) | |||
| 637910.ROD_30311 | (+) | (mitochondrial) | |||
| 637910.ROD_23491 | (+) | (ER) | |||
| 637910.ROD_46781 | (+) | (mitochondrial) | |||
| 637910.ROD_33371 | (>) | + | |||
| 637910.ROD_47611 | + | (PF03222) | |||
| 637910.ROD_03061 | + | (plastid) | |||
| 637910.ROD_13841 | (+) | ER | |||
| 637910.ROD_43831 | + | + | |||
| 637910.ROD_26771 | + | (PF01609) | |||
| 637910.ROD_40071 | (<) | + | |||
| 637910.ROD_48861 | + | (mitochondrial) | |||
| 637910.ROD_14111 | + | (mitochondrial) | |||
| 637910.ROD_44541 | + | (>) | |||
| 637910.ROD_47121 | + | (plastid) | |||
| 637910.ROD_11981 | + | (PF05935) | |||
| 637910.ROD_42821 | + | (mitochondrial) | |||
| 637910.ROD_40911 | + | (plastid) | |||
| 637910.ROD_00191 | + | (PF13347) | |||
| 637910.ROD_15881 | + | (mitochondrial) | |||
| 637910.ROD_33431 | (+) | ER | |||
| 637910.ROD_48691 | + | (mitochondrial) | |||
| 637910.ROD_47711 | (>) | (mitochondrial) | |||
| 637910.ROD_47131 | + | + | |||
| 637910.ROD_11971 | + | (PF03797) | |||
| 637910.ROD_37941 | (PF01228) | (mitochondrial) | |||
| 637910.ROD_10201 | + | (plastid) | |||
| 637910.ROD_16751 | (+) | ER | |||
| 637910.ROD_38951 | + | (mitochondrial) | |||
| 637910.ROD_42601 | (+) | ER; (ER) | |||
| 637910.ROD_29761 | + | + | |||
| 637910.ROD_41691 | (+) | ER | |||
| 637910.ROD_34241 | (+) | (ER); plastid | |||
| 637910.ROD_01051 | (<) | (mitochondrial) | |||
| 637910.ROD_30731 | (+) | ER | |||
| 637910.ROD_09131 | + | + | |||
| 637910.ROD_25271 | (+) | mitochondrial; (mitochondrial) | |||
| 637910.ROD_47301 | (>) | (mitochondrial) | |||
| 637910.ROD_40981 | + | plastid | |||
| 637910.ROD_23421 | + | (plastid) | |||
| 637910.ROD_23301 | (+) | ER; (mitochondrial) | |||
| 637910.ROD_23721 | + | (mitochondrial) | |||
| 637910.ROD_29092 | (+) | mitochondrial | |||
| 637910.ROD_18851 | + | plastid | |||
| 637910.ROD_15921 | (+) | ER; (plastid) | |||
| 637910.ROD_27801 | (+) | ER | |||
| 637910.ROD_49211 | (+) | (mitochondrial) | |||
| 637910.ROD_20451 | + | (ER) | |||
| 637910.ROD_18201 | (+) | + | (mitochondrial) | ||
| 637910.ROD_48901 | (+) | + | + | ||
| 637910.ROD_07061 | + | (PF01609) | |||
| 637910.ROD_17191 | + | (plastid) | |||
| 637910.ROD_32161 | + | (mitochondrial) | |||
| 637910.ROD_32901 | + | (ER) | |||
| 637910.ROD_45241 | + | (mitochondrial) | |||
| 637910.ROD_50021 | + | ||||
| 637910.ROD_08421 | + | ||||
| 637910.ROD_48781 | (PF01527) | ||||
| 637910.ROD_41941 | + | ||||
| 637910.ROD_26451 | (PF01527) | ||||
| 637910.ROD_10841 | + | ||||
| 637910.ROD_38831 | (PF01527) | ||||
| 637910.ROD_40351 | + | ||||
| 637910.ROD_08291 | (PF00923) | ||||
| 637910.ROD_46921 | + | ||||
| 637910.ROD_07731 | + | ||||
| 637910.ROD_24741 | (>) | ||||
| 637910.ROD_18301 | + | ||||
| 637910.ROD_42121 | + | ||||
| 637910.ROD_41801 | (PF01609) | ||||
| 637910.ROD_22981 | + | ||||
| 637910.ROD_33421 | (+) | (PF13910) | |||
| 637910.ROD_01171 | (PF13347) | ||||
| 637910.ROD_25561 | (+) | + | |||
| 637910.ROD_42681 | + | ||||
| 637910.ROD_21601 | + | ||||
| 637910.ROD_01201 | (PF00456) | ||||
| 637910.ROD_04851 | + | ||||
| 637910.ROD_40511 | (>) | ||||
| 637910.ROD_36661 | + | ||||
| 637910.ROD_31811 | + | ||||
| 637910.ROD_34311 | + | ||||
| 637910.ROD_17701 | (<) | ||||
| 637910.ROD_45911 | + | ||||
| 637910.ROD_09511 | + | ||||
| 637910.ROD_40691 | (PF01527) | ||||
| 637910.ROD_24951 | (PF02371) | ||||
| 637910.ROD_48681 | + | ||||
| 637910.ROD_10871 | (+) | (ER) | |||
| 637910.ROD_23631 | (PF01527) | ||||
| 637910.ROD_19871 | + | ||||
| 637910.ROD_32071 | (+) | (plastid) | |||
| 637910.ROD_02501 | + | ||||
| 637910.ROD_47351 | + | ||||
| 637910.ROD_29261 | (+) | (>) | |||
| 637910.ROD_28391 | (PF02371) | ||||
| 637910.ROD_49661 | + | ||||
| 637910.ROD_50131 | (PF01527) | ||||
| 637910.ROD_15381 | + | ||||
| 637910.ROD_50591 | (PF00923) | ||||
| 637910.ROD_27631 | (PF03797) | ||||
| 637910.ROD_35301 | (PF01527) | ||||
| 637910.ROD_01351 | (PF02371) | ||||
| 637910.ROD_38491 | + | ||||
| 637910.ROD_14891 | + | ||||
| 637910.ROD_17121 | + | ||||
| 637910.ROD_36301 | + | ||||
| 637910.ROD_03871 | + | ||||
| 637910.ROD_18991 | (+) | (plastid) | |||
| 637910.ROD_39361 | (PF02371) | ||||
| 637910.ROD_42321 | (PF13347) | ||||
| 637910.ROD_47631 | (PF01228) | ||||
| 637910.ROD_15391 | + | ||||
| 637910.ROD_00481 | (PF02371) | ||||
| 637910.ROD_22661 | + | ||||
| 637910.ROD_46581 | + | ||||
| 637910.ROD_14971 | + | ||||
| 637910.ROD_46161 | + | ||||
| 637910.ROD_38021 | (PF02371) | ||||
| 637910.ROD_41191 | + | ||||
| 637910.ROD_01531 | + | ||||
| 637910.ROD_13741 | + | ||||
| 637910.ROD_30011 | (PF07720) | ||||
| 637910.ROD_17381 | + | ||||
| 637910.ROD_50071 | + | ||||
| 637910.ROD_31301 | (>) | ||||
| 637910.ROD_11381 | + | ||||
| 637910.ROD_00321 | + | ||||
| 637910.ROD_32411 | + | ||||
| 637910.ROD_17611 | + | ||||
| 637910.ROD_08131 | (PF01609) | ||||
| 637910.ROD_22521 | + | ||||
| 637910.ROD_30161 | PF03050 | ||||
| 637910.ROD_19071 | + | ||||
| 637910.ROD_47751 | (PF01527) | ||||
| 637910.ROD_14101 | + | ||||
| 637910.ROD_00251 | + | ||||
| 637910.ROD_07561 | + | ||||
| 637910.ROD_21871 | + | ||||
| 637910.ROD_47281 | + | ||||
| 637910.ROD_34671 | (PF02371) | ||||
| 637910.ROD_47371 | + | ||||
| 637910.ROD_41321 | + | ||||
| 637910.ROD_13911 | PF03050 | ||||
| 637910.ROD_41921 | (PF06176) | ||||
| 637910.ROD_29661 | (PF01527) | ||||
| 637910.ROD_20701 | + | ||||
| 637910.ROD_50111 | PF03050 | ||||
| 637910.ROD_29151 | (PF00577) | ||||
| 637910.ROD_05951 | + | ||||
| 637910.ROD_36251 | PF03050 | ||||
| 637910.ROD_39691 | (>) | ||||
| 637910.ROD_15611 | + | ||||
| 637910.ROD_18841 | + | ||||
| 637910.ROD_25241 | (PF01228) | ||||
| 637910.ROD_04571 | (>) | ||||
| 637910.ROD_10391 | + | ||||
| 637910.ROD_35691 | (+) | (mitochondrial) | |||
| 637910.ROD_36741 | (+) | (mitochondrial) | |||
| 637910.ROD_36541 | + | ||||
| 637910.ROD_15281 | (>) | ||||
| 637910.ROD_26411 | PF03050 | ||||
| 637910.ROD_48431 | + | ||||
| 637910.ROD_25151 | (>) | ||||
| 637910.ROD_41421 | + | ||||
| 637910.ROD_22461 | (PF13347) | ||||
| 637910.ROD_26361 | (PF01527) | ||||
| 637910.ROD_08271 | (PF01228) | ||||
| 637910.ROD_49971 | + | ||||
| 637910.ROD_46031 | (+) | (ER) | |||
| 637910.ROD_29751 | + | ||||
| 637910.ROD_22841 | (PF01609) | ||||
| 637910.ROD_21391 | (>) | ||||
| 637910.ROD_02201 | + | ||||
| 637910.ROD_27881 | + | ||||
| 637910.ROD_09201 | + | ||||
| 637910.ROD_29481 | + | ||||
| 637910.ROD_37801 | (>) | ||||
| 637910.ROD_27861 | (PF11397) | ||||
| 637910.ROD_00061 | (PF00923) | ||||
| 637910.ROD_31691 | + | ||||
| 637910.ROD_35531 | + | ||||
| 637910.ROD_10231 | (+) | (<) | |||
| 637910.ROD_36621 | (+) | (plastid) | |||
| 637910.ROD_49911 | + | ||||
| 637910.ROD_47811 | + | ||||
| 637910.ROD_11421 | + | ||||
| 637910.ROD_39241 | + | ||||
| 637910.ROD_03401 | + | ||||
| 637910.ROD_28251 | (PF01527) | ||||
| 637910.ROD_37371 | (PF02371) | ||||
| 637910.ROD_47771 | + | ||||
| 637910.ROD_24861 | + | ||||
| 637910.ROD_12881 | (PF01527) | ||||
| 637910.ROD_12861 | PF03050 | ||||
| 637910.ROD_19501 | + | ||||
| 637910.ROD_03651 | (PF00577) | ||||
| 637910.ROD_01901 | (PF01527) | ||||
| 637910.ROD_24121 | (PF00923) | ||||
| 637910.ROD_06431 | PF03050 | ||||
| 637910.ROD_24511 | (+) | (PF16485) | |||
| 637910.ROD_13931 | (PF01527) | ||||
| 637910.ROD_13591 | + | ||||
| 637910.ROD_42651 | + | ||||
| 637910.ROD_05021 | + | ||||
| 637910.ROD_30771 | + | ||||
| 637910.ROD_29731 | + | ||||
| 637910.ROD_05791 | + | ||||
| 637910.ROD_23381 | (+) | + | |||
| 637910.ROD_30591 | + | ||||
| 637910.ROD_05371 | + | ||||
| 637910.ROD_30601 | + | ||||
| 637910.ROD_31731 | + | ||||
| 637910.ROD_38721 | + | ||||
| 637910.ROD_09011 | (PF01527) | ||||
| 637910.ROD_40711 | PF03050 | ||||
| 637910.ROD_05771 | (PF01527) | ||||
| 637910.ROD_06841 | (PF01527) | ||||
| 637910.ROD_10351 | PF03050 | ||||
| 637910.ROD_48671 | (>) | ||||
| 637910.ROD_47701 | + | ||||
| 637910.ROD_03501 | + | ||||
| 637910.ROD_12071 | + | ||||
| 637910.ROD_16511 | + | ||||
| 637910.ROD_25581 | + | ||||
| 637910.ROD_28281 | + | ||||
| 637910.ROD_48871 | + | ||||
| 637910.ROD_24501 | (+) | (mitochondrial) | |||
| 637910.ROD_40601 | + | ||||
| 637910.ROD_38111 | + | ||||
| 637910.ROD_14841 | (PF13347) | ||||
| 637910.ROD_30291 | (PF02371) | ||||
| 637910.ROD_00991 | + | ||||
| 637910.ROD_05901 | (PF00456) | ||||
| 637910.ROD_09821 | (+) | + | |||
| 637910.ROD_27751 | + | ||||
| 637910.ROD_09221 | + | ||||
| 637910.ROD_39771 | + | ||||
| 637910.ROD_36421 | + | ||||
| 637910.ROD_05581 | + | ||||
| 637910.ROD_35551 | (>) | ||||
| 637910.ROD_49421 | + | ||||
| 637910.ROD_38421 | + | ||||
| 637910.ROD_19421 | + | ||||
| 637910.ROD_20401 | + | ||||
| 637910.ROD_14691 | + | ||||
| 637910.ROD_11501 | + | ||||
| 637910.ROD_48061 | + | ||||
| 637910.ROD_14941 | + | ||||
| 637910.ROD_33101 | + | ||||
| 637910.ROD_34391 | + | ||||
| 637910.ROD_23501 | + | ||||
| 637910.ROD_18741 | + | ||||
| 637910.ROD_16521 | (PF01527) | ||||
| 637910.ROD_07631 | + | ||||
| 637910.ROD_12201 | (PF02371) | ||||
| 637910.ROD_08991 | PF03050 | ||||
| 637910.ROD_01921 | PF03050 | ||||
| 637910.ROD_06451 | (PF01527) | ||||
| 637910.ROD_21691 | + | ||||
| 637910.ROD_50081 | (+) | (plastid) | |||
| 637910.ROD_27211 | (PF13347) | ||||
| 637910.ROD_05351 | + | ||||
| 637910.ROD_30131 | + | ||||
| 637910.ROD_12541 | + | ||||
| 637910.ROD_20561 | + | ||||
| 637910.ROD_31391 | + | ||||
| 637910.ROD_33301 | (>) | ||||
| 637910.ROD_31881 | (PF01527) | ||||
| 637910.ROD_10111 | + | ||||
| 637910.ROD_38411 | + | ||||
| 637910.ROD_29971 | + | ||||
| 637910.ROD_18931 | + | ||||
| 637910.ROD_41621 | + | ||||
| 637910.ROD_04401 | (PF02371) | ||||
| 637910.ROD_10371 | (PF01527) | ||||
| 637910.ROD_49071 | + | ||||
| 637910.ROD_44361 | + | ||||
| 637910.ROD_45981 | (+) | (mitochondrial) | |||
| 637910.ROD_33821 | (PF01527) | ||||
| 637910.ROD_44741 | (+) | (mitochondrial) | |||
| 637910.ROD_03191 | + | ||||
| 637910.ROD_45761 | + | ||||
| 637910.ROD_43641 | (+) | (PF03222) | |||
| 637910.ROD_02571 | + | ||||
| 637910.ROD_14861 | + | ||||
| 637910.ROD_01061 | + | ||||
| 637910.ROD_05471 | + | ||||
| 637910.ROD_03371 | (>) | ||||
| 637910.ROD_02391 | + | ||||
| 637910.ROD_01591 | + | ||||
| 637910.ROD_02151 | + | ||||
| 637910.ROD_31891 | PF03050 | ||||
| 637910.ROD_13771 | + | ||||
| 637910.ROD_49711 | + | ||||
| 637910.ROD_11361 | (PF01609) | ||||
| 637910.ROD_39041 | + | not used | |||
| 637910.ROD_27021 | (PF00456) | ||||
| 637910.ROD_35971 | (PF02371) | ||||
| 637910.ROD_18161 | (PF00577) | ||||
| 637910.ROD_41501 | (>) | ||||
| 637910.ROD_10781 | (+) | (>) | |||
| 637910.ROD_47731 | PF03050 | ||||
| 637910.ROD_26481 | PF03050 | ||||
| 637910.ROD_03611 | (PF03797) | ||||
| 637910.ROD_46631 | (<) | ||||
| 637910.ROD_17921 | + | ||||
| 637910.ROD_02711 | (PF01609) | ||||
| 637910.ROD_22921 | + | ||||
| 637910.ROD_21211 | + | ||||
| 637910.ROD_17811 | (<) | ||||
| 637910.ROD_24251 | + | ||||
| 637910.ROD_02361 | + | ||||
| 637910.ROD_07231 | + | ||||
| 637910.ROD_23961 | (>) | ||||
| 637910.ROD_42841 | + | ||||
| 637910.ROD_42611 | (PF01609) | ||||
| 637910.ROD_20761 | (<) | ||||
| 637910.ROD_38501 | (<) | ||||
| 637910.ROD_27841 | + | ||||
| 637910.ROD_12551 | + | ||||
| 637910.ROD_29771 | (+) | (<) | |||
| 637910.ROD_41461 | (>) | ||||
| 637910.ROD_45531 | + | ||||
| 637910.ROD_14201 | + | ||||
| 637910.ROD_21541 | + | ||||
| 637910.ROD_25871 | + | not used | |||
| 637910.ROD_50601 | (PF00456) | ||||
| 637910.ROD_50511 | (PF00456) | ||||
| 637910.ROD_03961 | (<) | ||||
| 637910.ROD_09721 | (PF01228) | ||||
| 637910.ROD_41891 | (<) | ||||
| 637910.ROD_32461 | + | ||||
| 637910.ROD_33361 | + | ||||
| 637910.ROD_23201 | (+) | (ER) | |||
| 637910.ROD_11041 | + | ||||
| 637910.ROD_46871 | + | ||||
| 637910.ROD_28321 | PF03050 | ||||
| 637910.ROD_38891 | (PF13347) | ||||
| 637910.ROD_00391 | + | ||||
| 637910.ROD_19221 | (PF13347) | ||||
| 637910.ROD_12961 | (PF02371) | ||||
| 637910.ROD_32731 | (PF13347) | ||||
| 637910.ROD_21361 | + | ||||
| 637910.ROD_14511 | (+) | (<) | |||
| 637910.ROD_06241 | + | ||||
| 637910.ROD_45691 | + | ||||
| 637910.ROD_13561 | (PF13347) | ||||
| 637910.ROD_46421 | + | ||||
| 637910.ROD_03151 | + | ||||
| 637910.ROD_24321 | + | ||||
| 637910.ROD_30251 | + | ||||
| 637910.ROD_41201 | + | ||||
| 637910.ROD_42401 | + | ||||
| 637910.ROD_40551 | (>) | ||||
| 637910.ROD_41051 | + | ||||
| 637910.ROD_49861 | (PF01527) | ||||
| 637910.ROD_15431 | + | ||||
| 637910.ROD_36731 | + | ||||
| 637910.ROD_34501 | + | ||||
| 637910.ROD_37041 | + | ||||
| 637910.ROD_40121 | (PF01609) | ||||
| 637910.ROD_45821 | (PF01527) | ||||
| 637910.ROD_33031 | (PF02371) | ||||
| 637910.ROD_49681 | + | ||||
| 637910.ROD_43401 | + | ||||
| 637910.ROD_11431 | + | ||||
| 637910.ROD_23011 | (PF02371) | ||||
| 637910.ROD_38881 | (PF13347) | ||||
| 637910.ROD_07821 | (<) | ||||
| 637910.ROD_28301 | (PF01527) | ||||
| 637910.ROD_28231 | PF03050 | ||||
| 637910.ROD_05291 | + | ||||
| 637910.ROD_24131 | (PF00456) | ||||
| 637910.ROD_01701 | + | ||||
| 637910.ROD_34341 | (PF01527) | ||||
| 637910.ROD_37981 | (PF00923) | ||||
| 637910.ROD_15701 | (<) | ||||
| 637910.ROD_30081 | + | ||||
| 637910.ROD_40941 | + | ||||
| 637910.ROD_09411 | + | ||||
| 637910.ROD_16181 | + | ||||
| 637910.ROD_43941 | + | ||||
| 637910.ROD_41301 | (PF03797) | ||||
| 637910.ROD_06821 | PF03050 | ||||
| 637910.ROD_38691 | + | ||||
| 637910.ROD_36231 | (PF01527) | ||||
| 637910.ROD_49031 | + | ||||
| 637910.ROD_16861 | + | ||||
| 637910.ROD_11331 | (PF02371) | ||||
| 637910.ROD_11441 | + | ||||
| 637910.ROD_00571 | + | ||||
| 637910.ROD_23001 | (PF02371) | ||||
| 637910.ROD_08141 | (+) | (mitochondrial) | |||
| 637910.ROD_19931 | (+) | + | |||
| 637910.ROD_38851 | PF03050 | ||||
| 637910.ROD_12161 | (PF02371) | ||||
| 637910.ROD_47091 | (PF01609) | ||||
| 637910.ROD_21951 | + | ||||
| 637910.ROD_37251 | + | ||||
| 637910.ROD_34181 | + | ||||
| 637910.ROD_12741 | + | ||||
| 637910.ROD_33541 | + | ||||
| 637910.ROD_30501 | (+) | mitochondrial | |||
| 637910.ROD_30181 | (PF01527) | ||||
| 637910.ROD_05271 | + | ||||
| 637910.ROD_27661 | + | ||||
| 637910.ROD_28921 | (+) | + | |||
| 637910.ROD_25311 | (PF01609) | ||||
| 637910.ROD_29851 | + | ||||
| 637910.ROD_11691 | + | ||||
| 637910.ROD_32341 | + | ||||
| 637910.ROD_45801 | PF03050 | ||||
| 637910.ROD_28361 | + | ||||
| 637910.ROD_26441 | (PF01527) | ||||
| 637910.ROD_23611 | PF03050 | ||||
| 637910.ROD_12911 | PF15612 | ||||
| 637910.ROD_19321 | (+) | plastid | |||
| 637910.ROD_41021 | + | ||||
| 637910.ROD_25331 | + | ||||
| 637910.ROD_03031 | + | ||||
| 637910.ROD_08821 | + | ||||
| 637910.ROD_18321 | (<) | ||||
| 637910.ROD_34321 | PF03050 | ||||
| 637910.ROD_41591 | (PF13347) | ||||
| 637910.ROD_26311 | + | ||||
| 637910.ROD_09431 | + | ||||
| 637910.ROD_37321 | + | ||||
| 637910.ROD_13241 | + | ||||
| 637910.ROD_18951 | (PF01609) | ||||
| 637910.ROD_35321 | PF03050 | ||||
| 637910.ROD_17531 | (PF01609) | ||||
| 637910.ROD_27051 | (+) | ||||
| 637910.ROD_40171 | (+) | ||||
| 637910.ROD_04021 | (+) | ||||
| 637910.ROD_19911 | (+) | ||||
| 637910.ROD_25501 | (+) | ||||
| 637910.ROD_06991 | (+) | ||||
| 637910.ROD_34351 | (+) | ||||
| 637910.ROD_03111 | (+) | ||||
| 637910.ROD_07751 | (+) | ||||
| 637910.ROD_09771 | (+) | ||||
| 637910.ROD_25961 | (+) | ||||
| 637910.ROD_21371 | (+) | ||||
| 637910.ROD_12111 | (+) | ||||
| 637910.ROD_42111 | (+) | ||||
| 637910.ROD_17891 | (+) | ||||
| 637910.ROD_26551 | (+) | ||||
| 637910.ROD_26881 | (+) | ||||
| 637910.ROD_02471 | (+) | ||||
| 637910.ROD_34301 | (+) | ||||
| 637910.ROD_46171 | (+) | ||||
| 637910.ROD_46771 | (+) | ||||
| 637910.ROD_45261 | (+) | ||||
| 637910.ROD_24391 | (+) | ||||
| 637910.ROD_36891 | (+) | ||||
| 637910.ROD_04331 | (+) | ||||
| 637910.ROD_37781 | (+) | ||||
| 637910.ROD_31341 | (+) | ||||
| 637910.ROD_16131 | (+) | ||||
| 637910.ROD_02891 | (+) | ||||
| 637910.ROD_19641 | (+) | ||||
| 637910.ROD_39701 | (+) | ||||
| 637910.ROD_13091 | (+) | ||||
| 637910.ROD_00661 | (+) | ||||
| 637910.ROD_22861 | (+) | ||||
| 637910.ROD_07971 | (+) | ||||
| 637910.ROD_50691 | (+) | ||||
| 637910.ROD_15321 | (+) | ||||
| 637910.ROD_39681 | (+) | ||||
| 637910.ROD_06961 | (+) | ||||
| 637910.ROD_15541 | (+) | ||||
| 637910.ROD_35511 | (+) | ||||
| 637910.ROD_36641 | (+) | ||||
| 637910.ROD_49111 | (+) | ||||
| 637910.ROD_10921 | (+) | ||||
| 637910.ROD_25171 | (+) | ||||
| 637910.ROD_26571 | (+) | ||||
| 637910.ROD_32501 | (+) | ||||
| 637910.ROD_38011 | (+) | ||||
| 637910.ROD_24021 | (+) | ||||
| 637910.ROD_46021 | (+) | ||||
| 637910.ROD_03321 | (+) | ||||
| 637910.ROD_38161 | (+) | ||||
| 637910.ROD_27541 | (+) | ||||
| 637910.ROD_10661 | (+) | ||||
| 637910.ROD_29931 | (+) | ||||
| 637910.ROD_17751 | (+) | ||||
| 637910.ROD_40481 | (+) | ||||
| 637910.ROD_08831 | (+) | ||||
| 637910.ROD_08011 | (+) | ||||
| 637910.ROD_43471 | (+) | ||||
| 637910.ROD_40061 | (+) | ||||
| 637910.ROD_02421 | (+) | ||||
| 637910.ROD_38001 | (+) | ||||
| 637910.ROD_15991 | (+) | ||||
| 637910.ROD_30581 | (+) | ||||
| 637910.ROD_25251 | (+) | ||||
| 637910.ROD_36751 | (+) | ||||
| 637910.ROD_18381 | (+) | ||||
| 637910.ROD_49131 | (+) | ||||
| 637910.ROD_45831 | (+) | ||||
| 637910.ROD_33871 | (+) | ||||
| 637910.ROD_33691 | (+) | ||||
| 637910.ROD_48221 | (+) | ||||
| 637910.ROD_07541 | (+) | ||||
| 637910.ROD_26121 | (+) | ||||
| 637910.ROD_06231 | (+) | ||||
| 637910.ROD_31321 | (+) | ||||
| 637910.ROD_00451 | (+) | ||||
| 637910.ROD_44951 | (+) | ||||
| 637910.ROD_40891 | (+) | ||||
| 637910.ROD_30801 | (+) | ||||
| 637910.ROD_20611 | (+) | ||||
| 637910.ROD_03601 | (+) | ||||
| 637910.ROD_50261 | (+) | ||||
| 637910.ROD_09231 | (+) | ||||
| 637910.ROD_00871 | (+) | ||||
| 637910.ROD_13331 | (+) | ||||
| 637910.ROD_10001 | (+) | ||||
| 637910.ROD_23881 | (+) | ||||
| 637910.ROD_08471 | (+) | ||||
| 637910.ROD_08071 | (+) | ||||
| 637910.ROD_49301 | (+) | ||||
| 637910.ROD_47231 | (+) | ||||
| 637910.ROD_11571 | (+) | ||||
| 637910.ROD_02171 | (+) | ||||
| 637910.ROD_09641 | (+) | ||||
| 637910.ROD_16781 | (+) | ||||
| 637910.ROD_37771 | (+) | ||||
| 637910.ROD_45081 | (+) | ||||
| 637910.ROD_29961 | (+) | ||||
| 637910.ROD_41721 | (+) | ||||
| 637910.ROD_03631 | (+) | ||||
| 637910.ROD_22761 | (+) | ||||
| 637910.ROD_32671 | (+) | ||||
| 637910.ROD_16231 | (+) | ||||
| 637910.ROD_08221 | (+) | ||||
| 637910.ROD_48841 | (+) | ||||
| 637910.ROD_03741 | (+) | not used | |||
| 637910.ROD_40381 | (+) | not used | |||
| 637910.ROD_13001 | (+) | ||||
| 637910.ROD_40871 | (+) | not used | |||
| 637910.ROD_34171 | (+) | ||||
| 637910.ROD_03161 | (+) | ||||
| 637910.ROD_28161 | (+) | ||||
| 637910.ROD_01101 | (+) | ||||
| 637910.ROD_14871 | (+) | ||||
| 637910.ROD_27501 | (+) | ||||
| 637910.ROD_50401 | (+) | ||||
| 637910.ROD_38631 | (+) | ||||
| 637910.ROD_40901 | (+) | not used | |||
| 637910.ROD_43011 | (+) | ||||
| 637910.ROD_39121 | (+) | ||||
| 637910.ROD_07531 | (+) | ||||
| 637910.ROD_40021 | (+) | ||||
| 637910.ROD_23991 | (+) | ||||
| 637910.ROD_32541 | (+) | ||||
| 637910.ROD_28771 | (+) | ||||
| 637910.ROD_08231 | + | ||||
| 637910.ROD_21591 | (+) | ||||
| 637910.ROD_46671 | (+) | ||||
| 637910.ROD_43731 | (+) | ||||
| 637910.ROD_13491 | (+) | ||||
| 637910.ROD_03171 | (+) | ||||
| 637910.ROD_36951 | (+) | ||||
| 637910.ROD_06871 | (+) | ||||
| 637910.ROD_41071 | (+) | ||||
| 637910.ROD_48311 | (+) | ||||
| 637910.ROD_27331 | (+) | ||||
| 637910.ROD_36711 | (+) | ||||
| 637910.ROD_43001 | (+) | ||||
| 637910.ROD_04041 | (+) | ||||
| 637910.ROD_04201 | (+) | ||||
| 637910.ROD_11191 | (+) | ||||
| 637910.ROD_36851 | (+) | ||||
| 637910.ROD_19961 | (+) | ||||
| 637910.ROD_32491 | (+) | ||||
| 637910.ROD_48821 | (+) | ||||
| 637910.ROD_06671 | (+) | ||||
| 637910.ROD_06471 | (+) | ||||
| 637910.ROD_38241 | (+) | ||||
| 637910.ROD_38651 | (+) | ||||
| 637910.ROD_30391 | (+) | ||||
| 637910.ROD_13541 | (+) | ||||
| 637910.ROD_17261 | (+) | not used | |||
| 637910.ROD_16111 | (+) | ||||
| 637910.ROD_25891 | (+) | ||||
| 637910.ROD_35961 | (+) | ||||
| 637910.ROD_08881 | (+) | ||||
| 637910.ROD_09031 | (+) | ||||
| 637910.ROD_08431 | (+) | ||||
| 637910.ROD_13811 | (+) | ||||
| 637910.ROD_31101 | (+) | ||||
| 637910.ROD_07961 | (+) | ||||
| 637910.ROD_31911 | (+) | ||||
| 637910.ROD_48831 | (+) | ||||
| 637910.ROD_07261 | (+) | ||||
| 637910.ROD_34081 | (+) | ||||
| 637910.ROD_41491 | (+) | ||||
| 637910.ROD_20931 | (+) | ||||
| 637910.ROD_29401 | (+) | ||||
| 637910.ROD_03391 | (+) | ||||
| 637910.ROD_05101 | (+) | ||||
| 637910.ROD_09261 | (+) | ||||
| 637910.ROD_13211 | (+) | ||||
| 637910.ROD_31611 | (+) | ||||
| 637910.ROD_38461 | (+) | ||||
| 637910.ROD_10321 | (+) | ||||
| 637910.ROD_48481 | (+) | ||||
| 637910.ROD_47681 | (+) | ||||
| 637910.ROD_24911 | (+) | ||||
| 637910.ROD_47261 | (+) | ||||
| 637910.ROD_05921 | (+) | ||||
| 637910.ROD_21301 | (+) | ||||
| 637910.ROD_00761 | (+) | ||||
| 637910.ROD_34431 | (+) | ||||
| 637910.ROD_17161 | (+) | ||||
| 637910.ROD_15741 | (+) | ||||
| 637910.ROD_04911 | (+) | ||||
| 637910.ROD_23821 | (+) | ||||
| 637910.ROD_16641 | (+) | ||||
| 637910.ROD_49241 | (+) | ||||
| 637910.ROD_24591 | (+) | ||||
| 637910.ROD_19781 | (+) | ||||
| 637910.ROD_08381 | (+) | ||||
| 637910.ROD_34571 | (+) | ||||
| 637910.ROD_07831 | (+) | ||||
| 637910.ROD_26021 | (+) | ||||
| 637910.ROD_32271 | (+) | ||||
| 637910.ROD_13501 | (+) | ||||
| 637910.ROD_13691 | (+) | ||||
| 637910.ROD_24341 | (+) | not used | |||
| 637910.ROD_09091 | (+) | ||||
| 637910.ROD_30271 | (+) | ||||
| 637910.ROD_35751 | (+) | ||||
| 637910.ROD_42951 | (+) | ||||
| 637910.ROD_26011 | (+) | ||||
| 637910.ROD_37581 | (+) | ||||
| 637910.ROD_07701 | (+) | ||||
| 637910.ROD_36591 | (+) | ||||
| 637910.ROD_10631 | (+) | ||||
| 637910.ROD_10981 | (+) | ||||
| 637910.ROD_42341 | (+) | not used | |||
| 637910.ROD_50701 | (+) | ||||
| 637910.ROD_19141 | (+) | ||||
| 637910.ROD_28781 | (+) | ||||
| 637910.ROD_37431 | (+) | ||||
| 637910.ROD_26222 | (+) | not used | |||
| 637910.ROD_26221 | (+) | not used | |||
| 637910.ROD_23031 | (+) | ||||
| 637910.ROD_43891 | (+) | ||||
| 637910.ROD_01761 | (+) | ||||
| 637910.ROD_40611 | (+) | ||||
| 637910.ROD_04842 | (+) | ||||
| 637910.ROD_50551 | (+) | ||||
| 637910.ROD_29991 | (+) | ||||
| 637910.ROD_20671 | (+) |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- EffectiveT3 predictions using new standard model 2.0.1 (PROTEINS.NEW.EFFECTIVET3)
- EffectiveT3 predictions using old standard model 1.0.1 (PROTEINS.OLD.EFFECTIVET3)
- EffectiveCCBD predictions (PROTEINS.CHAPERONES.TXT)
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: YES (FDR = 12.5 %)
Estimated copy number = 1.3 (13/10 KEGG proteins)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 0.0 (0/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.3 (13/10 KEGG proteins)
Estimated copy number = 0.0 (0/10 KEGG proteins)
Release announcements
News
Latest publications
Contact
- +43 1 4277 76681
- +43 1 4277 876681
- contact.cube@univie.ac.at
