Metamenu

Effective results for Thermincola potens JR (eggnog40)

Summary

Number of putative secreted proteins: 150
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 23 eukaryotic-like domains, contained in 150 proteins (14 high, 136 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
635013.TherJR_2865PF01436 PF17170(mitochondrial)
635013.TherJR_1845PF01436 PF17170(mitochondrial)
635013.TherJR_1087PF01436 PF17170ER; (ER)
635013.TherJR_2222PF01436 PF17170ER
635013.TherJR_1424PF01436 PF17170mitochondrial; (mitochondrial)
635013.TherJR_1023PF01436 PF17170(mitochondrial)
635013.TherJR_1027(PF01578)ER
635013.TherJR_1026(PF05140)ER
635013.TherJR_0515(PF01966)ER
635013.TherJR_1125(PF05140)ER
635013.TherJR_0506(PF04143)ER
635013.TherJR_2867PF01436ER
635013.TherJR_2862(PF05140)ER
635013.TherJR_2861(PF01578)ER
635013.TherJR_2276(PF01578)ER
635013.TherJR_1279(PF01966)ER
635013.TherJR_1305(PF01966)mitochondrial
635013.TherJR_1126(PF01578)ER
635013.TherJR_2991(PF01058)mitochondrial; (mitochondrial)
635013.TherJR_2511(PF01966)mitochondrial; (mitochondrial)
635013.TherJR_2219(PF01578)ER
635013.TherJR_2859(PF00791)ER
635013.TherJR_0508(PF04143)ER
635013.TherJR_0343(PF01058)(ER)
635013.TherJR_2220(PF05140)mitochondrial; (mitochondrial)
635013.TherJR_0119PF01436ER
635013.TherJR_0749(PF01966)mitochondrial
635013.TherJR_1427(PF01578)ER
635013.TherJR_1426(PF05140)ER
635013.TherJR_1422PF01436ER
635013.TherJR_1420PF01436ER
635013.TherJR_2097PF01436ER
635013.TherJR_0764(PF01058)(mitochondrial)
635013.TherJR_0491(PF04143)ER; (ER)
635013.TherJR_0492(PF04143)ER; (ER)
635013.TherJR_2394(PF04143)ER
635013.TherJR_1174(PF13237)mitochondrial; (mitochondrial)
635013.TherJR_0156(PF13237)mitochondrial
635013.TherJR_2965(PF01058)(mitochondrial)
635013.TherJR_1147(PF01966)(mitochondrial)
635013.TherJR_2282(PF01578)ER
635013.TherJR_2774(PF01966)ER
635013.TherJR_2773(PF01966)ER; (ER)
635013.TherJR_2619(PF02310) (PF02607)
635013.TherJR_1121PF17170(ER)
635013.TherJR_0052(PF02310) (PF02607)
635013.TherJR_0058(PF02310) (PF02607)
635013.TherJR_0983(PF02310) (PF02607)
635013.TherJR_0986(PF02310) (PF02607)
635013.TherJR_0984(PF02310) (PF02607)
635013.TherJR_0988(PF02310) (PF02607)
635013.TherJR_2628(PF02310) (PF02607)
635013.TherJR_2950(PF02310) (PF02607)
635013.TherJR_0939(PF04432) (PF13534)
635013.TherJR_0746(PF01966)(ER)
635013.TherJR_2944(PF02310) (PF02607)
635013.TherJR_2623(PF02310) (PF02607)
635013.TherJR_1951(PF04432) (PF13534)
635013.TherJR_0027(PF02310) (PF02607)
635013.TherJR_0143(PF02310) (PF02607)
635013.TherJR_1937(PF03063)
635013.TherJR_0192(PF05598)
635013.TherJR_2768(PF01966)
635013.TherJR_0725(PF01964)
635013.TherJR_1127(PF02310)
635013.TherJR_1129PF17170
635013.TherJR_1901(PF13237)
635013.TherJR_0042(PF13534)
635013.TherJR_2305(PF01966)
635013.TherJR_2112(PF01966)
635013.TherJR_2332(PF02310)
635013.TherJR_2331(PF02811)
635013.TherJR_1131(PF05140)
635013.TherJR_1132(PF01578)
635013.TherJR_0267(PF05598)
635013.TherJR_0882(PF16760)
635013.TherJR_2039(PF01966)
635013.TherJR_2037(PF01058)
635013.TherJR_1696(PF05598)
635013.TherJR_1211(PF02811)
635013.TherJR_0093(PF05598)
635013.TherJR_2088(PF05598)
635013.TherJR_2004(PF13401)
635013.TherJR_2487(PF13401)
635013.TherJR_2310(PF05598)
635013.TherJR_2645(PF13401)
635013.TherJR_1202(PF01966)
635013.TherJR_2013PF04136
635013.TherJR_2010(PF01966)
635013.TherJR_2491(PF01966)
635013.TherJR_2650(PF04143)
635013.TherJR_1475(PF13401)
635013.TherJR_0789(PF02310)
635013.TherJR_0780(PF01966)
635013.TherJR_0257(PF01058)
635013.TherJR_1890(PF01966)
635013.TherJR_0559(PF13401)
635013.TherJR_1794(PF17125)
635013.TherJR_2513(PF01966)
635013.TherJR_1868(PF02811)
635013.TherJR_1883(PF13401)
635013.TherJR_2694(PF01966)
635013.TherJR_2216(PF02310)
635013.TherJR_2857(PF02310)
635013.TherJR_2855(PF02310)
635013.TherJR_2504(PF13237)not used
635013.TherJR_0239(PF02310)
635013.TherJR_0238(PF02310)
635013.TherJR_2044(PF05598)
635013.TherJR_1245(PF13237)not used
635013.TherJR_0209(PF01966)
635013.TherJR_1758(PF09419)
635013.TherJR_2236(PF10588)
635013.TherJR_2989(PF01058)
635013.TherJR_0743(PF10588)
635013.TherJR_0742(PF10588)
635013.TherJR_2422(PF01966)
635013.TherJR_2956(PF05598)
635013.TherJR_2959(PF03063)
635013.TherJR_1353(PF13237)
635013.TherJR_0481(PF13401)
635013.TherJR_1777(PF13534)
635013.TherJR_0550(PF01964)
635013.TherJR_0551(PF01964)
635013.TherJR_0007(PF05598)
635013.TherJR_2720(PF02811)
635013.TherJR_2722(PF02811)
635013.TherJR_2095(PF10588)
635013.TherJR_2940(PF03063)
635013.TherJR_2022(PF01966)
635013.TherJR_1015(PF10588)
635013.TherJR_0546(PF02310)
635013.TherJR_0545(PF02310)
635013.TherJR_0942(PF10588)
635013.TherJR_1575(PF02811)
635013.TherJR_2375(PF13534)
635013.TherJR_1372(PF05598)
635013.TherJR_1371(PF02811)
635013.TherJR_0150(PF17125)
635013.TherJR_0154(PF17125)
635013.TherJR_2932(PF05598)
635013.TherJR_1222(PF13534)
635013.TherJR_2144(PF03063)
635013.TherJR_0639(PF02811)
635013.TherJR_0631(PF13534)
635013.TherJR_1036(PF02811)
635013.TherJR_2176(PF05598)
635013.TherJR_2172(PF02811)
635013.TherJR_1157(PF03063)
635013.TherJR_2593(PF02811)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================