Effective results for Variovorax paradoxus EPS (eggnog40)

Summary

Number of putative secreted proteins: 110
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 26 eukaryotic-like domains, contained in 110 proteins (1 high, 109 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
595537.Varpa_1656(PF13458)ER
595537.Varpa_0816(PF13458)ER; (ER)
595537.Varpa_4456(PF13091)mitochondrial; (mitochondrial)
595537.Varpa_0156(PF13458)(mitochondrial)
595537.Varpa_0155(PF13091)ER
595537.Varpa_1425(PF07519)mitochondrial
595537.Varpa_2993(PF13091)ER
595537.Varpa_5714(PF13458)ER
595537.Varpa_3476(PF13458)(mitochondrial)
595537.Varpa_3804(PF13458)ER
595537.Varpa_1660(PF13458)ER; (ER)
595537.Varpa_5950(PF13458)ER
595537.Varpa_3281(PF02643)ER
595537.Varpa_5978(PF06414)(mitochondrial); (plastid)
595537.Varpa_2832(PF13458)ER
595537.Varpa_1751(PF13458)ER
595537.Varpa_0090(PF13458)(ER)
595537.Varpa_2587(PF13458)ER
595537.Varpa_2305(PF13458)ER
595537.Varpa_2894(PF13599)mitochondrial
595537.Varpa_5458(PF13458)ER
595537.Varpa_1207(PF13091)ER
595537.Varpa_4000(PF13458)ER
595537.Varpa_2526(PF13091)ER
595537.Varpa_1745(PF13458)ER
595537.Varpa_0216(PF13458)(mitochondrial); (plastid)
595537.Varpa_0211(PF13458)(ER)
595537.Varpa_0988(PF01148)ER
595537.Varpa_0485(PF13091)ER
595537.Varpa_0845(PF13458)(ER)
595537.Varpa_2439(PF13458)ER
595537.Varpa_4309(PF07519)ER
595537.Varpa_3445(PF13458)ER
595537.Varpa_3322(PF01148)ER
595537.Varpa_0162(PF13458)ER
595537.Varpa_0349(PF13458)mitochondrial
595537.Varpa_3877(PF13091)ER; (ER)
595537.Varpa_1657(PF13458)ER
595537.Varpa_0385(PF13458)ER
595537.Varpa_5290(PF01148)(ER)
595537.Varpa_3192(PF13458)ER
595537.Varpa_3191(PF13458)ER
595537.Varpa_3999(PF13458)ER
595537.Varpa_0505(PF02643)(mitochondrial)
595537.Varpa_1920(PF13458)ER
595537.Varpa_1925(PF07519)ER
595537.Varpa_4033(PF13458)mitochondrial
595537.Varpa_5429(PF13091)ER
595537.Varpa_4927(PF02643)(mitochondrial)
595537.Varpa_0100(PF13458)ER
595537.Varpa_5402(PF07519)ER
595537.Varpa_5409(PF13458)ER
595537.Varpa_5615(PF13458)ER
595537.Varpa_5634PF15240ER
595537.Varpa_2911(PF13599)mitochondrial
595537.Varpa_1323(PF13458)ER
595537.Varpa_3083(PF06884)ER
595537.Varpa_5331(PF13458)ER
595537.Varpa_5332(PF13458)ER
595537.Varpa_3552(PF13458)(ER)
595537.Varpa_3111(PF07519)plastid
595537.Varpa_3898(PF13458)(mitochondrial)
595537.Varpa_3952(PF02201)(mitochondrial)
595537.Varpa_4969(PF14336)(plastid)
595537.Varpa_3629(PF07519)(ER)
595537.Varpa_0328(PF10994)(mitochondrial)
595537.Varpa_2990(PF12899)
595537.Varpa_2466(PF13458)
595537.Varpa_0115(PF09298)
595537.Varpa_5281(PF14521)
595537.Varpa_1914(PF13091)
595537.Varpa_4202(PF10994)
595537.Varpa_5930(PF02201)
595537.Varpa_0537(PF13091)
595537.Varpa_5269(PF00847)
595537.Varpa_0944(PF06189)
595537.Varpa_0947(PF14521)
595537.Varpa_2893(PF13599)
595537.Varpa_2151(PF13599)
595537.Varpa_1565(PF00180)
595537.Varpa_0570(PF13599)
595537.Varpa_3262(PF13091)
595537.Varpa_0012(PF13091)
595537.Varpa_0149(PF16158)
595537.Varpa_3246(PF07958)
595537.Varpa_3245(PF12471)
595537.Varpa_0297(PF09298)
595537.Varpa_3386(PF13816)
595537.Varpa_1267(PF11969)
595537.Varpa_4752(PF00180)
595537.Varpa_0458(PF13458)
595537.Varpa_0305(PF13599)
595537.Varpa_5684(PF03162)
595537.Varpa_1152(PF06189)
595537.Varpa_3812(PF09298)
595537.Varpa_5965(PF00180)
595537.Varpa_2105(PF13458)
595537.Varpa_2374(PF13091)
595537.Varpa_4883(PF00180)
595537.Varpa_4888(PF16155)
595537.Varpa_1552(PF05637)
595537.Varpa_4907(PF13458)
595537.Varpa_0104(PF16155)
595537.Varpa_0569(PF13599)
595537.Varpa_1963(PF00180)
595537.Varpa_4346(PF00180)
595537.Varpa_3278(PF00180)
595537.Varpa_5239(PF06414)
595537.Varpa_0614(PF00180)
595537.Varpa_2912(PF13599)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================