Metamenu

Effective results for Clostridium papyrosolvens DSM 2782 (eggnog40)

Summary

Number of putative secreted proteins: 314
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 59 eukaryotic-like domains, contained in 314 proteins (40 high, 274 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
588581.Cpap_2598(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)ER; (ER)
588581.Cpap_3712(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)(ER)
588581.Cpap_2599(PF02801) (PF08242) (PF00550) (PF14765) (PF16197) (PF00109) (PF08659)
588581.Cpap_1809(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)(ER)
588581.Cpap_0079(PF02801) (PF08242) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_4120(PF02018) (PF06452) (PF00331) (PF00395)ER
588581.Cpap_3272(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_4119(PF02018) (PF06452) (PF00331) (PF00395)ER
588581.Cpap_4106(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_0013(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_0011(PF02801) (PF08242) (PF00550) (PF16197) (PF08659) (PF00109)
588581.Cpap_0010(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)not used
588581.Cpap_3719(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_3718(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_3713(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_3715(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_0009(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)not used
588581.Cpap_2601(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_0280(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)not used
588581.Cpap_3273(PF02801) (PF08242) (PF00550) (PF16197) (PF14765) (PF00109)
588581.Cpap_0078(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)not used
588581.Cpap_0012(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)not used
588581.Cpap_2680(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_2600(PF02801) (PF00550) (PF16197) (PF14765) (PF00109) (PF08659)
588581.Cpap_3714(PF02801) (PF16197) (PF00550) (PF08659) (PF00109)
588581.Cpap_3716(PF02801) (PF00550) (PF16197) (PF00109) (PF08659)
588581.Cpap_0283(PF00109) (PF02801) (PF00550) (PF08659) (PF16197)
588581.Cpap_1681(PF00109) (PF02801) (PF00550) (PF16197) (PF14765)
588581.Cpap_1680(PF00109) (PF02801) (PF00550) (PF08659) (PF16197)
588581.Cpap_3482(PF14478) (PF00395)ER
588581.Cpap_1986(PF03442) (PF00395)ER
588581.Cpap_4107(PF02801) (PF00550) (PF00109) (PF16197)
588581.Cpap_0003(PF02801) (PF00550) (PF16197) (PF00109)not used
588581.Cpap_1000(PF13353) (PF04055)(mitochondrial)
588581.Cpap_1159PF03422 (PF00457)ER
588581.Cpap_2753(PF02018) PF00759ER
588581.Cpap_1829(PF06452) (PF00395)ER
588581.Cpap_1695(PF02018) (PF08757)ER
588581.Cpap_2000(PF13353) (PF04055)(mitochondrial)
588581.Cpap_3302PF03422 (PF00331)ER
588581.Cpap_3306PF03422 (PF03664)ER
588581.Cpap_0254(PF02018) PF00759ER
588581.Cpap_3314PF03422 (PF17189)ER
588581.Cpap_3311PF03422 (PF03664)ER
588581.Cpap_3310(PF02057) PF03422ER
588581.Cpap_2682(PF02801) (PF00550) (PF16197) (PF00109)
588581.Cpap_2679(PF02801) (PF00550) (PF00109) (PF16197)
588581.Cpap_2677(PF17167) (PF06165)ER
588581.Cpap_2855PF03422 (PF17189)ER; (mitochondrial)
588581.Cpap_4137(PF10588) (PF02256) (PF02906)
588581.Cpap_4132(PF06541)ER
588581.Cpap_4048(PF00395)ER
588581.Cpap_1110(PF06452)ER
588581.Cpap_3484(PF02361)(ER)
588581.Cpap_3481(PF14478)ER
588581.Cpap_3483(PF14478)ER
588581.Cpap_2048(PF03442)ER
588581.Cpap_1403PF10250ER
588581.Cpap_3732(PF00395)ER
588581.Cpap_3731(PF00395)ER
588581.Cpap_1629(PF00395)ER
588581.Cpap_0755(PF10588) (PF02256) (PF02906)
588581.Cpap_0573(PF04055)(mitochondrial)
588581.Cpap_0574(PF00395)ER
588581.Cpap_3582(PF00395)ER
588581.Cpap_2521(PF10588) (PF02256) (PF02906)
588581.Cpap_4240PF00759ER
588581.Cpap_1424(PF06452)ER
588581.Cpap_1192(PF00331)ER
588581.Cpap_3852(PF08757)ER
588581.Cpap_2886(PF14249)(mitochondrial)
588581.Cpap_0778(PF00395)ER
588581.Cpap_2940PF03422ER
588581.Cpap_1949(PF00395)ER
588581.Cpap_0014(PF02801) (PF16197) (PF00109)
588581.Cpap_3445(PF00395)ER
588581.Cpap_1950(PF00395)ER
588581.Cpap_2347(PF02801) (PF00109)(mitochondrial)
588581.Cpap_1147(PF00395)ER
588581.Cpap_0145(PF00395)ER
588581.Cpap_2356(PF00395)ER
588581.Cpap_2354(PF00395)ER
588581.Cpap_1157PF03422ER
588581.Cpap_1808(PF04055)mitochondrial; (mitochondrial)
588581.Cpap_1931(PF00395)ER
588581.Cpap_1930(PF00395)(ER)
588581.Cpap_0867(PF00395)ER
588581.Cpap_2291(PF06541)ER
588581.Cpap_0722(PF00395)ER
588581.Cpap_1906(PF08757)ER
588581.Cpap_3976(PF06541)ER
588581.Cpap_3408(PF08757)ER
588581.Cpap_0986(PF00395)ER
588581.Cpap_0269(PF00457)ER
588581.Cpap_3695(PF00395)ER
588581.Cpap_3697(PF00395)ER
588581.Cpap_3692(PF06445)mitochondrial
588581.Cpap_3323PF00759ER
588581.Cpap_2749PF03422ER
588581.Cpap_1693PF00759ER
588581.Cpap_1694PF00759mitochondrial
588581.Cpap_2325(PF12051)ER
588581.Cpap_0273PF00759ER
588581.Cpap_3689PF03422ER
588581.Cpap_4227(PF10588) (PF02256) (PF02906)
588581.Cpap_3023(PF01789)(mitochondrial)
588581.Cpap_3832(PF04055)mitochondrial
588581.Cpap_3303PF03422ER
588581.Cpap_3307PF03422ER
588581.Cpap_3304PF03422ER
588581.Cpap_3305PF03422ER
588581.Cpap_3309PF03422ER
588581.Cpap_2125(PF00543)ER
588581.Cpap_2121(PF00395)ER
588581.Cpap_2931(PF12051)ER
588581.Cpap_0250(PF03442)ER
588581.Cpap_0253PF00759ER
588581.Cpap_0256PF00759ER
588581.Cpap_3534(PF00395)ER
588581.Cpap_3229PF00759ER
588581.Cpap_3313PF03422ER
588581.Cpap_1961(PF00395)mitochondrial
588581.Cpap_1888PF00759ER
588581.Cpap_0912(PF00543)(mitochondrial)
588581.Cpap_3256(PF08757)ER
588581.Cpap_1328PF03422ER
588581.Cpap_1635(PF17189)ER
588581.Cpap_0698(PF06165) (PF17167)
588581.Cpap_3807(PF13353) (PF04055)
588581.Cpap_2193(PF04055)(mitochondrial)
588581.Cpap_4053(PF13353) (PF04055)
588581.Cpap_0218(PF13353) (PF04055)
588581.Cpap_3910(PF13353) (PF04055)
588581.Cpap_2731(PF13353) (PF04055)
588581.Cpap_1199(PF13353) (PF04055)
588581.Cpap_1770(PF08242) (PF00550)
588581.Cpap_4108(PF00550)(mitochondrial)
588581.Cpap_3635(PF17167) (PF06165)
588581.Cpap_3705(PF02801) (PF00109)
588581.Cpap_1942(PF02801) (PF00109)
588581.Cpap_1941(PF02801) (PF00109)
588581.Cpap_1012(PF13353) (PF04055)
588581.Cpap_1002(PF13353) (PF04055)
588581.Cpap_0841(PF04055)(mitochondrial)
588581.Cpap_2707(PF13353) (PF04055)
588581.Cpap_2367(PF14526)(plastid)
588581.Cpap_2179(PF13353) (PF04055)
588581.Cpap_1739(PF13353) (PF04055)
588581.Cpap_0999(PF13353) (PF04055)
588581.Cpap_2904(PF13353) (PF04055)
588581.Cpap_3409(PF09359)(mitochondrial)
588581.Cpap_2336(PF17167) (PF06165)
588581.Cpap_0408(PF13353) (PF04055)
588581.Cpap_1670(PF02801) (PF00109)
588581.Cpap_1676(PF00550) (PF16197)not used
588581.Cpap_1682(PF02801) (PF00109)
588581.Cpap_2232(PF00331)(mitochondrial)
588581.Cpap_1765(PF08242) (PF00550)
588581.Cpap_3533(PF00395)(mitochondrial)
588581.Cpap_4206(PF04055)(mitochondrial)
588581.Cpap_3811(PF13353) (PF04055)
588581.Cpap_0913(PF00543)(mitochondrial)
588581.Cpap_2476PF03727 PF00349
588581.Cpap_0124(PF02915)
588581.Cpap_4135(PF01257)
588581.Cpap_4139(PF01257)
588581.Cpap_3803(PF04055)
588581.Cpap_3802(PF00550)
588581.Cpap_3805(PF04055)
588581.Cpap_3804(PF00550)
588581.Cpap_3243(PF00550)
588581.Cpap_3242(PF00550)
588581.Cpap_3241(PF00550)
588581.Cpap_3249(PF06445)
588581.Cpap_0789(PF12437)
588581.Cpap_3064(PF01761)
588581.Cpap_3118(PF02915)
588581.Cpap_1401PF10250
588581.Cpap_1240(PF14311)
588581.Cpap_2535(PF04055)
588581.Cpap_1330(PF04055)
588581.Cpap_1334(PF02361)
588581.Cpap_0753(PF01257)
588581.Cpap_1750(PF00395)
588581.Cpap_1759(PF02361)
588581.Cpap_3873(PF14526)
588581.Cpap_0972(PF06445)
588581.Cpap_3475(PF02361)
588581.Cpap_0801(PF00543)
588581.Cpap_3723PF09138
588581.Cpap_2235(PF02223)
588581.Cpap_0582(PF00707)
588581.Cpap_2520(PF01257)
588581.Cpap_1767(PF00550)
588581.Cpap_4113(PF00550)
588581.Cpap_4110(PF00550)
588581.Cpap_1960(PF00395)
588581.Cpap_0566(PF14526)
588581.Cpap_0968(PF01761)
588581.Cpap_3261(PF00550)
588581.Cpap_1107(PF13353)
588581.Cpap_2426(PF02361)
588581.Cpap_2956(PF04055)
588581.Cpap_0480(PF00290)
588581.Cpap_4076(PF06445)
588581.Cpap_3704(PF00550)
588581.Cpap_2947(PF02938)
588581.Cpap_2945(PF04055)
588581.Cpap_1167(PF01761)
588581.Cpap_2898(PF04055)
588581.Cpap_3847(PF00331)
588581.Cpap_3846(PF01761)
588581.Cpap_3841(PF00550)
588581.Cpap_1010(PF00550)
588581.Cpap_1015(PF01761)
588581.Cpap_3935(PF02915)
588581.Cpap_0830(PF06541)
588581.Cpap_3389(PF04768)
588581.Cpap_3364(PF02361)
588581.Cpap_3760(PF14526)
588581.Cpap_0527(PF02915)
588581.Cpap_3423(PF04055)
588581.Cpap_3378(PF02475)
588581.Cpap_3089(PF02361)
588581.Cpap_2591(PF04055)
588581.Cpap_2592(PF04055)
588581.Cpap_2596PF03031
588581.Cpap_2597(PF00550)
588581.Cpap_1805(PF00550)
588581.Cpap_1936(PF00550)
588581.Cpap_0282(PF14765)
588581.Cpap_0281(PF14765)
588581.Cpap_0286(PF04055)
588581.Cpap_0998(PF04055)
588581.Cpap_3416(PF00707)
588581.Cpap_3567(PF00543)
588581.Cpap_3346PF03031
588581.Cpap_3345(PF00550)
588581.Cpap_3342(PF00550)
588581.Cpap_2762(PF06445)
588581.Cpap_2907PF08433
588581.Cpap_2615(PF00550)
588581.Cpap_2346(PF14526)
588581.Cpap_2588(PF00550)
588581.Cpap_1582(PF04055)
588581.Cpap_1904(PF09359)
588581.Cpap_0502(PF12437)
588581.Cpap_3406(PF02938)
588581.Cpap_3351(PF02223)
588581.Cpap_2625(PF00550)
588581.Cpap_2620(PF02223)
588581.Cpap_1133(PF13353)
588581.Cpap_1139(PF04055)
588581.Cpap_1223(PF00550)
588581.Cpap_1222(PF00550)
588581.Cpap_1224(PF04055)
588581.Cpap_0080(PF14765)
588581.Cpap_1103(PF06445)
588581.Cpap_1104(PF14526)
588581.Cpap_2812(PF10588)
588581.Cpap_2815(PF01229)
588581.Cpap_2814(PF01229)
588581.Cpap_3051(PF02915)
588581.Cpap_1672(PF04055)
588581.Cpap_0274PF00759
588581.Cpap_0093PF06268
588581.Cpap_4080(PF06445)
588581.Cpap_3333(PF01229)
588581.Cpap_4223(PF01257)
588581.Cpap_4226(PF01257)
588581.Cpap_3207(PF04055)
588581.Cpap_0542(PF02915)
588581.Cpap_1683(PF00550)
588581.Cpap_2482(PF00290)
588581.Cpap_1118(PF06445)
588581.Cpap_1446(PF04055)
588581.Cpap_2264(PF14526)
588581.Cpap_2262(PF14526)
588581.Cpap_1201(PF04055)
588581.Cpap_1202(PF04055)
588581.Cpap_1847(PF04055)
588581.Cpap_1662(PF04055)
588581.Cpap_1669(PF00550)
588581.Cpap_3831(PF00550)
588581.Cpap_3835(PF00550)
588581.Cpap_3837(PF00550)
588581.Cpap_0939(PF16760)
588581.Cpap_3789(PF00290)
588581.Cpap_1183(PF00395)
588581.Cpap_2272(PF13353)
588581.Cpap_0780(PF00543)
588581.Cpap_0257PF00759
588581.Cpap_0259PF00759
588581.Cpap_1764(PF08242)
588581.Cpap_3829(PF04055)
588581.Cpap_3828(PF00550)
588581.Cpap_3797(PF04055)
588581.Cpap_3799(PF00550)
588581.Cpap_2683(PF00550)
588581.Cpap_2684(PF00550)
588581.Cpap_2512(PF04055)
588581.Cpap_2519(PF01257)
588581.Cpap_1644(PF06777)
588581.Cpap_1646(PF09419)
588581.Cpap_0220(PF03630)
588581.Cpap_1083(PF04055)
588581.Cpap_4140(PF02906)
588581.Cpap_3819(PF04055)
588581.Cpap_3814(PF04055)
588581.Cpap_0917(PF04055)
588581.Cpap_0918(PF01257)
588581.Cpap_3254(PF09359)
588581.Cpap_2678(PF00550)
588581.Cpap_2692(PF00550)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================