Metamenu

Effective results for Lachnospiraceae oral taxon 107 str. F0167 (eggnog40)

Summary

Number of putative secreted proteins: 96
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 18 eukaryotic-like domains, contained in 96 proteins (10 high, 86 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
575593.HMPREF0491_01896(PF06541)ER
575593.HMPREF0491_01532(PF06445)(mitochondrial); mitochondrial
575593.HMPREF0491_03009PF16804(ER)
575593.HMPREF0491_01288(PF02361)ER
575593.HMPREF0491_00069(PF02361)ER
575593.HMPREF0491_00249(PF05593)(ER)
575593.HMPREF0491_02342(PF05593)(ER)
575593.HMPREF0491_02915(PF13306)ER
575593.HMPREF0491_02354(PF13306)ER
575593.HMPREF0491_02355(PF13306)ER
575593.HMPREF0491_02356(PF13306)(ER)
575593.HMPREF0491_00212(PF01131)(mitochondrial)
575593.HMPREF0491_02782(PF13306)ER
575593.HMPREF0491_00331(PF06541)mitochondrial; (mitochondrial)
575593.HMPREF0491_01319(PF13306)ER
575593.HMPREF0491_00151(PF06541)ER
575593.HMPREF0491_01957(PF05593)(ER); ER
575593.HMPREF0491_00014(PF13306)ER
575593.HMPREF0491_00013(PF13306)ER
575593.HMPREF0491_02893(PF13306)ER; (ER)
575593.HMPREF0491_02891(PF13306)ER
575593.HMPREF0491_02305(PF13306)ER
575593.HMPREF0491_00317(PF06541)ER
575593.HMPREF0491_02310(PF13306)ER
575593.HMPREF0491_02321(PF13306)ER
575593.HMPREF0491_00079(PF02361)(ER)
575593.HMPREF0491_00424(PF01131)(plastid)
575593.HMPREF0491_00639(PF16387)
575593.HMPREF0491_02453(PF06250)
575593.HMPREF0491_02452(PF06250)
575593.HMPREF0491_02451PF01885not used
575593.HMPREF0491_02076(PF06250)
575593.HMPREF0491_01534(PF06445)
575593.HMPREF0491_02448PF01885
575593.HMPREF0491_01520(PF06445)not used
575593.HMPREF0491_01521(PF06445)
575593.HMPREF0491_03011(PF05593)
575593.HMPREF0491_03017(PF05593)
575593.HMPREF0491_02380(PF13597)
575593.HMPREF0491_00399(PF12847)
575593.HMPREF0491_02867(PF03432)
575593.HMPREF0491_03025PF01885
575593.HMPREF0491_02350(PF05593)
575593.HMPREF0491_00250(PF05593)
575593.HMPREF0491_01073(PF00251)
575593.HMPREF0491_02810PF04587
575593.HMPREF0491_01101(PF13597)
575593.HMPREF0491_02106(PF01131)
575593.HMPREF0491_02741(PF02361)
575593.HMPREF0491_02117(PF02361)
575593.HMPREF0491_02111(PF03432)
575593.HMPREF0491_02754(PF03432)
575593.HMPREF0491_00275(PF00251)
575593.HMPREF0491_00505(PF06445)
575593.HMPREF0491_00473(PF03432)
575593.HMPREF0491_00477(PF07693)
575593.HMPREF0491_02349PF16804
575593.HMPREF0491_02680(PF06250)
575593.HMPREF0491_02778(PF05593)
575593.HMPREF0491_02779(PF05593)
575593.HMPREF0491_00522(PF00251)
575593.HMPREF0491_00526(PF00251)
575593.HMPREF0491_00456(PF02361)
575593.HMPREF0491_01328(PF03432)
575593.HMPREF0491_01321PF16804
575593.HMPREF0491_00148(PF06445)
575593.HMPREF0491_01813PF00627
575593.HMPREF0491_01554(PF02361)
575593.HMPREF0491_01001(PF06250)
575593.HMPREF0491_01000(PF06250)
575593.HMPREF0491_02379(PF13597)
575593.HMPREF0491_01945(PF06445)
575593.HMPREF0491_02944(PF01131)
575593.HMPREF0491_02307(PF13306)
575593.HMPREF0491_02306(PF13306)
575593.HMPREF0491_02636(PF07693)
575593.HMPREF0491_02635(PF07693)
575593.HMPREF0491_00228(PF12847)
575593.HMPREF0491_00485(PF01131)
575593.HMPREF0491_02889(PF13306)
575593.HMPREF0491_01972(PF00251)
575593.HMPREF0491_02953(PF01131)
575593.HMPREF0491_02997(PF03432)
575593.HMPREF0491_01993(PF05593)
575593.HMPREF0491_03043PF01885not used
575593.HMPREF0491_01568PF04810
575593.HMPREF0491_01838(PF05593)
575593.HMPREF0491_02327(PF05593)
575593.HMPREF0491_02323(PF05593)
575593.HMPREF0491_01203(PF06250)
575593.HMPREF0491_01510(PF00251)
575593.HMPREF0491_00606(PF02361)
575593.HMPREF0491_02336(PF05593)
575593.HMPREF0491_02337(PF05593)
575593.HMPREF0491_03061(PF13597)
575593.HMPREF0491_03062(PF13597)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: NO (FDR = 0.5 %)
  • Functional Type III secretion system: N.D.
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: N.D.

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================