Metamenu

Genomes encoding eukaryotic-like proteins

PF01131 DNA topoisomerase

Copy number in non-pathogens:
Mean=1.59 Stddev=0.90

Genomes significantly enriched in this eukaryotic-like domain (ELD; score >= 4):

Genome Class* ELD score Number of proteins containing this domain
Bacillus cereus s 4 6
Bacillus cereus s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Clostridioides difficile s 4 6
Clostridioides difficile s 4 6
Xenorhabdus nematophila F1 s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Pseudomonas aeruginosa s 4 6
Clostridioides difficile s 4 6
Bacteroides fragilis 638R s 4 6
Xenorhabdus nematophila ATCC 19061 s 5 7
Pseudomonas aeruginosa MH27 s 4 6
Parabacteroides distasonis s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 4 6
Bacteroides thetaiotaomicron s 5 7
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 4 6
Clostridioides difficile s 5 7
Clostridioides difficile s 4 6
Clostridioides difficile s 4 6
Clostridioides difficile s 7 8
Clostridioides difficile s 5 7
Clostridioides difficile s 5 7
Clostridioides difficile s 4 6
Clostridioides difficile s 4 6
Porphyromonas gingivalis s 4 6
Parabacteroides distasonis s 4 6
[Clostridium] clostridioforme s 5 7
Faecalicatena contorta s 5 7
Flavonifractor plautii s 4 6
Bacteroides vulgatus s 4 6
Bacteroides thetaiotaomicron s 4 6
Parabacteroides distasonis s 5 7
Clostridioides difficile s 4 6
Clostridioides difficile s 5 7
Chryseobacterium indologenes s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Dorea formicigenerans ATCC 27755 s 4 6
Bacteroides coprocola DSM 17136 s 4 6
Bacteroides intestinalis DSM 17393 s 4 6
Chryseobacterium gleum ATCC 35910 s 5 7
Tyzzerella nexilis DSM 1787 s 5 7
Bacteroides xylanisolvens SD CC 1b s 4 6
Bacteroides vulgatus PC510 s 4 6
Bacteroides ovatus SD CMC 3f s 7 8
Bacteroides finegoldii DSM 17565 s 4 6
Hungatella hathewayi DSM 13479 s 7 8
Faecalibacterium prausnitzii A2-165 s 4 6
Roseburia inulinivorans DSM 16841 s 4 6
Peptoniphilus asaccharolyticus DSM 20463 s 4 6
[Clostridium] bolteae WAL-14578 s 4 6
Faecalibacterium cf. prausnitzii KLE1255 s 4 6
Paraprevotella clara YIT 11840 s 4 6
Prevotella denticola CRIS 18C-A s 5 7
Bacteroides uniformis ATCC 8492 s 4 6
[Clostridium] bolteae ATCC BAA-613 s 4 6
Bacillus cereus Rock1-15 s 5 7
Lachnospiraceae bacterium 28-4 s 4 6
Clostridium sp. ASF502 s 7 8
Faecalibacterium prausnitzii M21/2 s 4 6
Enterococcus faecium 509 s 4 6
Enterococcus faecium 515 s 5 7
Bacteroides fragilis str. I1345 s 4 6
Bacteroides fragilis str. 3774 T13 s 4 6
Bacteroides fragilis str. 3998 T(B) 4 s 5 7
Bacteroides fragilis str. S36L5 s 5 7
Bacteroides fragilis str. S36L11 s 7 8
Bacteroides fragilis str. 3986 N(B)19 s 4 6
Bacteroides fragilis str. 3725 D9(v) s 4 6
Bacteroides fragilis str. S36L12 s 5 7
Clostridium sp. M62/1 s 7 8
Clostridium perfringens E str. JGS1987 s 4 6
Prevotella pleuritidis F0068 s 4 6
Bacteroides cellulosilyticus WH2 s 4 6
Blautia wexlerae DSM 19850 s 7 8
Prevotella denticola DSM 20614 = JCM 13449 s 4 6
Prevotella corporis DSM 18810 = JCM 8529 s 4 6
Bacteroides sp. 1_1_6 s 5 7
Bacteroides sp. 2_2_4 s 7 8
Bacteroides sp. 9_1_42FAA s 5 7
Clostridium sp. D5 s 4 6
Bacteroides sp. 3_1_33FAA s 4 6
Parabacteroides sp. D13 s 4 6
Parabacteroides sp. 20_3 s 5 7
Erysipelotrichaceae bacterium 6_1_45 s 4 6
Lachnospiraceae bacterium 3_1_57FAA_CT1 s 7 8
Clostridium sp. 7_3_54FAA s 5 7
Johnsonella ignava ATCC 51276 s 7 8
Bacteroides sp. 3_1_19 s 4 6
Bacteroides sp. 1_1_30 s 7 8
Erysipelotrichaceae bacterium 2_2_44A s 4 6
Ruminococcaceae bacterium D16 s 5 7
Bacteroides oleiciplenus YIT 12058 s 4 6
[Clostridium] symbiosum WAL-14163 s 4 6
[Clostridium] symbiosum WAL-14673 s 5 7
Peptoanaerobacter stomatis s 4 6
Bacteroides caccae CL03T12C61 s 8 9
Bacteroides cellulosilyticus CL02T12C19 s 4 6
Bacteroides fragilis CL03T00C08 s 5 7
Bacteroides fragilis CL03T12C07 s 5 7
Bacteroides fragilis CL05T12C13 s 8 9
Bacteroides fragilis CL07T00C01 s 5 7
Bacteroides fragilis CL07T12C05 s 5 7
Bacteroides nordii CL02T12C05 s 5 7
Bacteroides ovatus CL02T12C04 s 9 10
Bacteroides ovatus CL03T12C18 s 5 7
Bacteroides uniformis CL03T00C23 s 5 7
Bacteroides uniformis CL03T12C37 s 4 6
Bacteroides xylanisolvens CL03T12C04 s 5 7
Parabacteroides distasonis CL03T12C09 s 4 6
Parabacteroides goldsteinii CL02T12C30 s 4 6
Parabacteroides merdae CL03T12C32 s 7 8
Bacteroides fragilis HMW 610 s 5 7
Enterococcus sp. GMD4E s 4 6
Enterococcus faecium E525 s 4 6
Pseudomonas aeruginosa VRFPA07 s 4 6
Enterococcus faecium 1,230,933 s 5 7
Enterococcus faecium 1,231,501 s 4 6
Enterococcus faecium 1,141,733 s 4 6
Enterococcus faecium Com15 s 4 6
Lachnospiraceae oral taxon 107 str. F0167 s 4 6
Prevotella nigrescens F0103 s 9 10
[Clostridium] bolteae 90B7 s 4 6
[Clostridium] bolteae 90A9 s 8 9
[Clostridium] bolteae 90A5 s 4 6
[Clostridium] bolteae 90B3 s 5 7
[Clostridium] clostridioforme 90A6 s 9 10
[Clostridium] clostridioforme 90A4 s 8 9
[Clostridium] clostridioforme 90B1 s 5 7
[Clostridium] clostridioforme 90A1 s 5 7
[Clostridium] clostridioforme 90A3 s 5 7
[Clostridium] clostridioforme 90A8 s 8 9
[Clostridium] clostridioforme CM201 s 5 7
Bacteroides fragilis s 5 7
Bacteroides fragilis s 4 6
Bacillus mycoides s 8 9
Prevotella sp. HUN102 s 5 7
[Clostridium] lactatifermentans DSM 14214 s 9 10
Lactonifactor longoviformis DSM 17459 s 5 7
Bacteroides fragilis s 4 6
Bacteroides thetaiotaomicron s 4 6
[Clostridium] innocuum s 4 6
Bacillus cereus s 5 7
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 7 8
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 8 9
Clostridioides difficile s 4 6
Xanthomonas euvesicatoria s 4 6
Enterococcus faecium s 5 7
Pseudomonas aeruginosa s 4 6
Bacillus thuringiensis s 4 6
Clostridioides difficile s 4 6
Clostridioides difficile s 4 6
Clostridioides difficile s 4 6
Bacillus cereus s 4 6
Bacillus cereus s 4 6
Bacillus cereus s 5 7
Enterococcus faecium s 4 6
Xanthomonas euvesicatoria s 4 6
Xanthomonas euvesicatoria s 4 6
Xanthomonas euvesicatoria s 4 6
Xanthomonas euvesicatoria s 4 6
Xanthomonas euvesicatoria s 4 6
Pseudomonas aeruginosa s 4 6
Bacillus thuringiensis s 5 7
Prevotella intermedia s 4 6
Bacteroides ovatus s 4 6
Bacillus cereus s 4 6
Bacillus cereus s 4 6
Bacteroides caecimuris s 5 7
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Enterococcus faecium s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 10 11
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 7 8
Pseudomonas aeruginosa s 5 7
Pseudomonas aeruginosa s 4 6
Bacillus thuringiensis s 5 7
Prevotella enoeca s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 5 7
Enterococcus faecium s 4 6
Bacteroides vulgatus s 5 7
Enterococcus faecium s 4 6
Bacillus thuringiensis s 4 6
Lachnoclostridium sp. YL32 s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Bacillus thuringiensis s 4 6
Bacillus thuringiensis s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Lactobacillus plantarum s 4 6
[Clostridium] clostridioforme s 5 7
[Clostridium] clostridioforme s 5 7
Bacillus cereus s 5 7
Eisenbergiella tayi s 9 10
Eisenbergiella tayi s 7 8
Eisenbergiella tayi s 4 6
Eisenbergiella tayi s 4 6
Clostridioides difficile s 4 6
Bacillus cereus s 4 6
Pseudomonas syringae pv. actinidiae s 7 8
Bacillus cereus s 4 6
Bacillus cereus s 5 7
[Clostridium] clostridioforme s 5 7
Pseudomonas aeruginosa s 4 6
Lactobacillus plantarum s 4 6
Xanthomonas euvesicatoria s 4 6
Bacteroides thetaiotaomicron s 5 7
Bacillus cereus s 5 7
Bacillus cereus s 4 6
Eisenbergiella tayi s 4 6
Enterococcus faecium s 5 7
Vibrio campbellii s 4 6
Vibrio campbellii s 4 6
Pseudomonas koreensis s 4 6
Bacteroides dorei s 4 6
Bacillus mycoides s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 7 8
Pseudomonas aeruginosa s 7 8
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 8 9
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Pseudomonas aeruginosa s 4 6
Enterococcus faecium s 4 6
Enterococcus faecium s 4 6
Prevotella intermedia s 4 6
Pseudomonas aeruginosa s 4 6
Bacillus cereus s 5 7
Bacillus cereus s 4 6
Clostridioides difficile 630 s 4 6

*p=pathogen;s=symbiont