Effective results for Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) (eggnog40)
Summary
Number of putative secreted proteins: 141
- Predicted by T4SEpre: 87
- Predicted by EffectiveELD: 10 eukaryotic-like domains, contained in 67 proteins (30 high, 37 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): Type IV
Protein based results
Putative secreted proteins (weak evidence indicated by parentheses)
| Protein | EffectiveT3 | EffectiveCCBD | T4SEpre | EffectiveELD | Predotar |
|---|---|---|---|---|---|
| 572265.HDEF_0166 | + | ER | |||
| 572265.HDEF_0164 | + | ER; (ER) | |||
| 572265.HDEF_1342 | + | ER | |||
| 572265.HDEF_2230 | (PF13127) | ER | |||
| 572265.HDEF_1119 | + | (mitochondrial); mitochondrial | |||
| 572265.HDEF_0411 | + | ER | |||
| 572265.HDEF_0981 | PF01844 | mitochondrial | |||
| 572265.HDEF_1817 | + | ER | |||
| 572265.HDEF_1007 | (PF00959) | ER; (ER) | |||
| 572265.HDEF_1269 | + | (ER) | |||
| 572265.HDEF_0321 | + | ER | |||
| 572265.HDEF_1499 | + | ER | |||
| 572265.HDEF_1843 | + | (mitochondrial) | |||
| 572265.HDEF_1679 | + | mitochondrial | |||
| 572265.HDEF_1675 | (PF00959) | ER | |||
| 572265.HDEF_1333 | + | ER | |||
| 572265.HDEF_1459 | (PF00959) | ER; (ER) | |||
| 572265.HDEF_1945 | + | ER | |||
| 572265.HDEF_0138 | + | (ER) | |||
| 572265.HDEF_2002 | PF01844 | mitochondrial | |||
| 572265.HDEF_2022 | PF01844 | mitochondrial | |||
| 572265.HDEF_0434 | (PF13358) | ER | |||
| 572265.HDEF_1345 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_1295 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_1903 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2237 | + | (plastid) | |||
| 572265.HDEF_1935 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2049 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0413 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0982 | PF00078 PF01844 | ||||
| 572265.HDEF_1251 | PF00078 PF01844 | ||||
| 572265.HDEF_0992 | PF00078 PF01844 | ||||
| 572265.HDEF_0351 | PF00078 PF01844 | ||||
| 572265.HDEF_2129 | + | (ER) | |||
| 572265.HDEF_1000 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2202 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_1015 | (PF13358) | (plastid) | |||
| 572265.HDEF_1461 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0237 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0836 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_1079 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2321 | PF00078 PF01844 | ||||
| 572265.HDEF_2253 | + | (mitochondrial) | |||
| 572265.HDEF_0796 | PF00078 PF01844 | ||||
| 572265.HDEF_1444 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_1223 | PF00078 PF01844 | ||||
| 572265.HDEF_2242 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2181 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2188 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2290 | + | PF00620 | |||
| 572265.HDEF_1937 | PF00078 PF01844 | ||||
| 572265.HDEF_2195 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0582 | PF00078 PF01844 | ||||
| 572265.HDEF_0619 | PF00078 PF01844 | ||||
| 572265.HDEF_0616 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0297 | PF00078 PF01844 | ||||
| 572265.HDEF_1437 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_1415 | PF00078 PF01844 | ||||
| 572265.HDEF_0865 | + | (plastid) | |||
| 572265.HDEF_0263 | + | (mitochondrial) | |||
| 572265.HDEF_0284 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0726 | PF00078 PF01844 | ||||
| 572265.HDEF_1156 | PF00078 PF01844 | ||||
| 572265.HDEF_1371 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_1375 | PF00078 PF01844 | ||||
| 572265.HDEF_2001 | PF00078 PF01844 | ||||
| 572265.HDEF_1706 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_0847 | PF00078 PF01844 | ||||
| 572265.HDEF_0441 | PF00078 PF01844 | ||||
| 572265.HDEF_0935 | (PF13358) | (mitochondrial) | |||
| 572265.HDEF_2023 | PF00078 PF01844 | ||||
| 572265.HDEF_0540 | PF00078 PF01844 | ||||
| 572265.HDEF_1619 | + | ||||
| 572265.HDEF_1767 | + | ||||
| 572265.HDEF_2239 | + | ||||
| 572265.HDEF_0950 | + | ||||
| 572265.HDEF_0398 | (PF00102) | ||||
| 572265.HDEF_0372 | + | ||||
| 572265.HDEF_1112 | PF01844 | ||||
| 572265.HDEF_2139 | (PF13358) | ||||
| 572265.HDEF_1194 | + | ||||
| 572265.HDEF_0969 | + | ||||
| 572265.HDEF_0983 | PF00078 | ||||
| 572265.HDEF_1038 | + | ||||
| 572265.HDEF_1816 | + | ||||
| 572265.HDEF_2076 | + | ||||
| 572265.HDEF_0409 | (PF00959) | ||||
| 572265.HDEF_0575 | + | ||||
| 572265.HDEF_0574 | (PF07798) | ||||
| 572265.HDEF_0190 | + | ||||
| 572265.HDEF_1136 | + | ||||
| 572265.HDEF_2063 | + | ||||
| 572265.HDEF_0217 | + | ||||
| 572265.HDEF_0505 | + | ||||
| 572265.HDEF_0327 | + | ||||
| 572265.HDEF_0031 | + | ||||
| 572265.HDEF_0037 | + | ||||
| 572265.HDEF_1011 | PF01844 | ||||
| 572265.HDEF_1270 | + | ||||
| 572265.HDEF_1272 | + | ||||
| 572265.HDEF_1653 | (PF04383) | ||||
| 572265.HDEF_2302 | + | ||||
| 572265.HDEF_1510 | (PF07720) | ||||
| 572265.HDEF_1514 | + | ||||
| 572265.HDEF_2088 | + | ||||
| 572265.HDEF_0010 | + | ||||
| 572265.HDEF_1477 | + | ||||
| 572265.HDEF_1474 | + | ||||
| 572265.HDEF_1502 | + | ||||
| 572265.HDEF_1542 | + | ||||
| 572265.HDEF_1649 | + | ||||
| 572265.HDEF_1155 | + | ||||
| 572265.HDEF_1997 | + | ||||
| 572265.HDEF_2336 | + | ||||
| 572265.HDEF_0497 | + | ||||
| 572265.HDEF_0105 | + | ||||
| 572265.HDEF_0107 | + | ||||
| 572265.HDEF_1451 | PF01844 | ||||
| 572265.HDEF_1456 | (PF04383) | ||||
| 572265.HDEF_1985 | + | ||||
| 572265.HDEF_1247 | + | ||||
| 572265.HDEF_1957 | + | ||||
| 572265.HDEF_0057 | + | ||||
| 572265.HDEF_0919 | + | ||||
| 572265.HDEF_0722 | + | ||||
| 572265.HDEF_1408 | + | ||||
| 572265.HDEF_1403 | + | ||||
| 572265.HDEF_2000 | PF00078 | ||||
| 572265.HDEF_0920 | (PF07798) | ||||
| 572265.HDEF_0633 | + | ||||
| 572265.HDEF_0141 | + | ||||
| 572265.HDEF_0142 | + | ||||
| 572265.HDEF_0845 | + | ||||
| 572265.HDEF_0843 | + | ||||
| 572265.HDEF_0443 | + | ||||
| 572265.HDEF_0622 | + | ||||
| 572265.HDEF_1355 | + | ||||
| 572265.HDEF_1351 | + | ||||
| 572265.HDEF_1283 | + | ||||
| 572265.HDEF_2024 | PF00078 | ||||
| 572265.HDEF_0897 | + |
Detailed merged results for each protein sequence
- Detailed merged results as table (merge_results.html)
- Detailed merged results as tab delimited file (merge_results.csv)
Individual results for each protein sequence
- T4SEpre bpbAac predictions (T4SEpre_bpbAac_FinalResult.csv)
- T4SEpre psAac predictions (T4SEpre_psAac_FinalResult.csv)
- EffectiveELD predictions (PROTEINS.ELD.TXT)
- Predotar predictions using animal/human model (Predotar_output_modelANIMAL.TXT)
- Predotar predictions using plant model (Predotar_output_modelPLANT.TXT)
Genome based results
Summary
- Gram negative: YES (FDR = 0.5 %)
- Functional Type III secretion system: NO (FDR = 12.5 %)
- Functional Type IV secretion system: YES (FDR = 7.2 %)
Estimated copy number = 1.1 (11/10 KEGG proteins)
- Functional Type VI secretion system: NO (FDR = 7.7 %)
Individual results for each secretion system
- List of 100 most important COGs/NOGs for prediction of functional Type III secretion system (T3_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type IV secretion system (T4_top100_COGS.xls)
- List of 100 most important COGs/NOGs for prediction of functional Type VI secretion system (T6_top100_COGS.xls)
- List of COGs assigned to Type III secretion system in KEGG (T3SS_KEGG_cmp.xls)
- List of COGs assigned to Type IV secretion system in KEGG (T4SS_KEGG_cmp.xls)
- List of COGs assigned to Type VI secretion system in KEGG (T6SS_KEGG_cmp.xls)
Parameters:
==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================
Estimated copy number = 1.1 (11/10 KEGG proteins)
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