Metamenu

Effective results for Syntrophus aciditrophicus SB (eggnog40)

Summary

Number of putative secreted proteins: 114
- Predicted by T4SEpre: 0
- Predicted by EffectiveELD: 38 eukaryotic-like domains, contained in 114 proteins (9 high, 105 medium Z-score)
Predicted protein secretion systems (parentheses indicate weak positive predictions lacking more than 50% of core proteins of a secretion system): None

Protein based results

Putative secreted proteins (weak evidence indicated by parentheses)

ProteinEffectiveT3EffectiveCCBDT4SEpreEffectiveELDPredotar
56780.SYN_02878(PF13607) (PF13549) (PF13380)(mitochondrial)
56780.SYN_02139(PF01257) (PF10589) (PF01512)mitochondrial
56780.SYN_01969(PF01715)mitochondrial; (mitochondrial)
56780.SYN_02112(PF13607) (PF13549) (PF13380)
56780.SYN_01648(PF01257) (PF10589) (PF01512)
56780.SYN_00513PF03188ER
56780.SYN_00748(PF13607) (PF13549) (PF13380)
56780.SYN_03254(PF00164)mitochondrial; (mitochondrial)
56780.SYN_02684(PF16889)(ER)
56780.SYN_02895PF06552ER
56780.SYN_02426(PF01257) (PF10589) (PF01512)
56780.SYN_01183(PF01592)ER
56780.SYN_02999(PF01894)(mitochondrial)
56780.SYN_02607(PF13607) (PF13549) (PF13380)
56780.SYN_02609(PF13607) (PF13549) (PF13380)
56780.SYN_00049(PF13607) (PF13549) (PF13380)
56780.SYN_00631(PF01257) (PF10589) (PF01512)
56780.SYN_01949(PF13607) (PF13549) (PF13380)
56780.SYN_00621PF10143(ER)
56780.SYN_00628(PF00037)ER
56780.SYN_00152(PF10589) (PF01512) (PF00037)
56780.SYN_01369(PF10589) (PF01512) (PF01257)
56780.SYN_01637(PF01610)plastid
56780.SYN_01645(PF12838) (PF00037)
56780.SYN_03249(PF01610)plastid
56780.SYN_02594(PF13336) (PF02550)
56780.SYN_03311(PF00164)mitochondrial; not used
56780.SYN_00026(PF01556) (PF00684)
56780.SYN_00256(PF00037)(mitochondrial)
56780.SYN_02414PF00014(ER)
56780.SYN_00879(PF00343) (PF05693)
56780.SYN_03439(PF01894)(mitochondrial); not used
56780.SYN_00658(PF13336)(mitochondrial); not used
56780.SYN_03216(PF00037)(mitochondrial)
56780.SYN_01906(PF01556) (PF00684)
56780.SYN_00647(PF13607) (PF13380)
56780.SYN_00461(PF02971) (PF07837)
56780.SYN_02360(PF13336) (PF02550)
56780.SYN_00934(PF13336) (PF02550)
56780.SYN_00935(PF13336) (PF02550)
56780.SYN_00723(PF01610)plastid
56780.SYN_00567(PF01610)plastid
56780.SYN_02711(PF01556) (PF00684)
56780.SYN_00626(PF12838) (PF00037)
56780.SYN_03294(PF00882)
56780.SYN_00507(PF00882)
56780.SYN_03074(PF01610)
56780.SYN_01647(PF01257)
56780.SYN_01649(PF12838)
56780.SYN_02592(PF00697)
56780.SYN_02058(PF00037)
56780.SYN_01658(PF00037)
56780.SYN_00694(PF00037)
56780.SYN_00231(PF00343)
56780.SYN_01331(PF00343)
56780.SYN_01664(PF01512)
56780.SYN_02918(PF12838)
56780.SYN_02676(PF16889)
56780.SYN_01920(PF01610)
56780.SYN_00257(PF12838)
56780.SYN_03124(PF10609)
56780.SYN_03123(PF10609)
56780.SYN_02520(PF13380)
56780.SYN_00800(PF12838)
56780.SYN_00249PF16269
56780.SYN_02880(PF00343)
56780.SYN_02888(PF01715)
56780.SYN_02535(PF02938)
56780.SYN_03754(PF01592)not used
56780.SYN_00017(PF13020)
56780.SYN_03218(PF01610)
56780.SYN_03215(PF12838)
56780.SYN_00473(PF01894)
56780.SYN_02641PF10143
56780.SYN_03745(PF16983)
56780.SYN_00646(PF13549)
56780.SYN_02423(PF12838)
56780.SYN_02427(PF12838)
56780.SYN_02425(PF01257)
56780.SYN_02182PF06888
56780.SYN_00298(PF00343)
56780.SYN_01852(PF13020)
56780.SYN_01182(PF01592)
56780.SYN_01185(PF10609)
56780.SYN_01186(PF00037)
56780.SYN_01187(PF00037)
56780.SYN_02137(PF12838)
56780.SYN_00117(PF01610)
56780.SYN_00110(PF01556)
56780.SYN_02577(PF01894)
56780.SYN_02761(PF00343)
56780.SYN_03036(PF01610)
56780.SYN_02549(PF00037)
56780.SYN_02548PF10237
56780.SYN_02602(PF02938)
56780.SYN_01605(PF02112)
56780.SYN_03042(PF01610)
56780.SYN_00891PF10143
56780.SYN_00894(PF01556)
56780.SYN_01382(PF01610)
56780.SYN_01381(PF01610)
56780.SYN_00630(PF12838)
56780.SYN_02125(PF01592)
56780.SYN_01943(PF00697)
56780.SYN_00093(PF05189)
56780.SYN_02945(PF01610)
56780.SYN_02497(PF12838)
56780.SYN_01370(PF00037)
56780.SYN_01286(PF07998)
56780.SYN_01629(PF12838)
56780.SYN_00625(PF00037)
56780.SYN_00153(PF01257)
56780.SYN_00081(PF10609)
56780.SYN_02481(PF00697)

Detailed merged results for each protein sequence

Individual results for each protein sequence

Genome based results

Summary

  • Gram negative: YES (FDR = 0.5 %)
  • Functional Type III secretion system: NO (FDR = 12.5 %)
  • Functional Type IV secretion system: NO (FDR = 7.2 %)
  • Functional Type VI secretion system: NO (FDR = 7.7 %)

Individual results for each secretion system

Parameters:

==========================================================
EFFECTIVE_T3_OLD=selective
EFFECTIVE_T3_NEW=selective
PREDOTAR_ANIMAL_OR_PLANT=a
PROTEINS=INPUT PROTEINS
MODUS=genome
RUN_PREDOTAR=T
RUN_EFFECTIVE_T3=T
RUN_T4SEpre=0.5
RUN_EFFECTIVE_CCBD=T
RUN_EFFECTIVE_ELD=4
CheckM_COMPLETENESS=
RUN_EffectiveS346=T
GENOTYPE=COG Profile
EMAIL=
==========================================================